Contig 009078:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS109B11Sequence606009078 (3)ref|XP_006358735.1|240PREDICTED: uncharacterized protein LOC102604455 [Solanum tuberosum]
JMFS154E04Sequence626009078 (3)ref|XP_006358735.1|239PREDICTED: uncharacterized protein LOC102604455 [Solanum tuberosum]
JMFS160F04Sequence592009078 (3)ref|XP_006358735.1|240PREDICTED: uncharacterized protein LOC102604455 [Solanum tuberosum]

Alignment

This contig is upended


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JMFS160F04+                                                              TCTTGGGCA
JMFS154E04+                                        GATCCACCGGATCCTTACTTTCTCTTGGGCA
JMFS109B11+                                                                 TGGGCA
                      ____________________________________________________________
consensus                                          GATCCACCGGATCCTTACTTTCTCTTGGGCA
 
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JMFS160F04+           GGCGGATTTTCCGGTACCGGCGGTCCTTCTTTACCTTCACCTTCCGGTGTTCCCTCAGCC
JMFS154E04+           GGCGGATTTTCCGGTACCGGCGGTCCTTCTTTACCTTCACCTTCCGGTGTTCCCTCAGCC
JMFS109B11+           GGCGGATTTTCCGGTACCGGCGGTCCTTCTTTACCTTCACCTTCCGGTGTTCCCTCAGCC
                      ____________________________________________________________
consensus             GGCGGATTTTCCGGTACCGGCGGTCCTTCTTTACCTTCACCTTCCGGTGTTCCCTCAGCC
 
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JMFS160F04+           TTTGCAGGAGGCGGTTCAGCGGCCGCTACCTCACCAGGTTTGGCTTCAGCTGGTGGTTCC
JMFS154E04+           TTTGCAGGAGGCGGTTCAGCGGCCGCTACCTCACCAGGTTTGGCTTCAGCTGGTGGTTCC
JMFS109B11+           TTTGCAGGAGGCGGTTCAGCGGCCGCTACCTCACCAGGTTTGGCTTCAGCTGGTGGTTCC
                      ____________________________________________________________
consensus             TTTGCAGGAGGCGGTTCAGCGGCCGCTACCTCACCAGGTTTGGCTTCAGCTGGTGGTTCC
 
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JMFS160F04+           GTCTCCGGCGGCGGCGGGGGGGGAGGAACCGTTTCATCAACAAAATAAATCTTCAACCCA
JMFS154E04+           GTCTCCGGCGGCGGCGGGGGCGGAGGAACCGTTTCATCAACAAAATAAATCTTCAACCCA
JMFS109B11+           GTCTCCGGCGGCGGCGGGGGCGGAGGAACCGTTTCATCAACAAAATAAATCTTCAACCCA
                      ____________________________________________________________
consensus             GTCTCCGGCGGCGGCGGGGGCGGAGGAACCGTTTCATCAACAAAATAAATCTTCAACCCA
 
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JMFS160F04+           ATATCTCCCTGAATCCAGCTCAACAAGTTCTTCCTCTCCAAAGGATAATATATCAACGCC
JMFS154E04+           ATATCTCCCTGAATCCAGCTCAACAAGTTCTTCCTCTCCAAAGGATAATATATCAACGCC
JMFS109B11+           ATATCTCCCTGAATCCAGCTCAACAAGTTCTTCCTCTCCAAAGGATAATATATCAACGCC
                      ____________________________________________________________
consensus             ATATCTCCCTGAATCCAGCTCAACAAGTTCTTCCTCTCCAAAGGATAATATATCAACGCC
 
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JMFS160F04+           TCTTCGCCTTTCTTCACAAACTGCGTAGCGTTGAGCTTGACCCTCCCCAGAAAGTTATTC
JMFS154E04+           TCTTCGCCTTTCTTCACAAACTGCGTAGCGTTGAGCTTGACCCTCCCCAGAAAGTTATTC
JMFS109B11+           TCTTCGCCTTTCTTCACAAACTGCGTAGCGTTGAGCTTGACCCTCCCCAGAAAGTTATTC
                      ____________________________________________________________
consensus             TCTTCGCCTTTCTTCACAAACTGCGTAGCGTTGAGCTTGACCCTCCCCAGAAAGTTATTC
 
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JMFS160F04+           CTGGTGGTGGGGCCAACGTTCTTATCATGGTAGACATCGAGCTCGAGCATGTCGCCGAAA
JMFS154E04+           CTGGTGGTGGGGCCAACGTTCTTATCATGGTAGACATCGAGCTCGAGCATGTCGCCGAAA
JMFS109B11+           CTGGTGGTGGGGCCAACGTTCTTATCATGGTAGACATCGAGCTCGAGCATGTCGCCGAAA
                      ____________________________________________________________
consensus             CTGGTGGTGGGGCCAACGTTCTTATCATGGTAGACATCGAGCTCGAGCATGTCGCCGAAA
 
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JMFS160F04+           ATGTCGGAATGTTTGCTGAGATTAAACTCGAGCATCTCGTTCCACTGAGGGTTGAGATCG
JMFS154E04+           ATGTCGGAATGTTTGCTGAGATTAAACTCGAGCATCTCGTTCCACTGAGGGTTGAGATCG
JMFS109B11+           ATGTCGGAATGTTTGCTGAGATTAAACTCGAGCATCTCGTTCCACTGAGGGTTGAGATCG
                      ____________________________________________________________
consensus             ATGTCGGAATGTTTGCTGAGATTAAACTCGAGCATCTCGTTCCACTGAGGGTTGAGATCG
 
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JMFS160F04+           CGAAGGACGGTTCGGGTCTTCTTTCTCTGGCCGTAGAAGTCGATAACGACGTAAGGGCTG
JMFS154E04+           CGAAGGACGGTTCGGGTCTTCTTTCTCTGGCCGTAGAAGTCGATAACGACGTAAGGGCTG
JMFS109B11+           CGAAGGACGGTTCGGGTCTTCTTTCTCTGGCCGTAGAAGTCGATAACGACGTAAGGGCTG
                      ____________________________________________________________
consensus             CGAAGGACGGTTCGGGTCTTCTTTCTCTGGCCGTAGAAGTCGATAACGACGTAAGGGCTG
 
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JMFS160F04+           GAGGCGCCATGGCCGTCTTTGGGTAGCAAGTTCCGGGCTTCTATAACCTCTACTATCAGC
JMFS154E04+           GAGGCGCCATGGCCGTCTTTGGGTAGCAAGTTCCGGGCTTCTATAACCTCTACTATCAGC
JMFS109B11+           GAGGCGCCATGGCCGTCTTTGGGTAGCAAGTTCCGGGCTTCTATAACCTCTACTATCAGC
                      ____________________________________________________________
consensus             GAGGCGCCATGGCCGTCTTTGGGTAGCAAGTTCCGGGCTTCTATAACCTCTACTATCAGC
 
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JMFS160F04+           TTCCTTTCTGTGCCCATCTCTAATCAC                                 
JMFS154E04+           TTCCTTTCTGTGCCCATCTCTAATCACATTACTTACTGGGCAACTCTAAGAGAGA     
JMFS109B11+           TTCCTTTCTGTGCCCATCTCTAATCACATTACTTACTGGGCAACTCTAAGAGAGAGAGAG
                      ____________________________________________________________
consensus             TTCCTTTCTGTGCCCATCTCTAATCACATTACTTACTGGGCAACTCTAAGAGAGAGAGAG