| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS023E08 | Sequence | 492 | 009074 (6) | ref|XP_006359523.1| | 2e-62 | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1 | |||||
| JMFS061D08 | Sequence | 606 | 009074 (6) | ref|XP_006359523.1| | 1e-59 | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1 | |||||
| JMFS094F07 | Sequence | 612 | 009074 (6) | ref|XP_006359523.1| | 6e-77 | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1 | |||||
| JMFS102D07 | Sequence | 612 | 009074 (6) | ref|XP_006359523.1| | 5e-61 | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1 | |||||
| JMFS107E10 | Sequence | 627 | 009074 (6) | ref|XP_006359523.1| | 1e-64 | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1 | |||||
| JMFS165H02 | Sequence | 583 | 009074 (6) | ref|XP_006359523.1| | 1e-70 | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1 | |||||
This contig is upended
. : . : . : . : . : . :
JMFS094F07+ TATGTGGTGAGTC
____________________________________________________________
consensus TATGTGGTGAGTC
. : . : . : . : . : . :
JMFS165H02+ CAGCATATCCATAAACAGTGTCTTCCCATGATGCAAGTGCCCAACCAAAGCA
JMFS023E08+ AGTGCCCAACCAAAGCA
JMFS094F07+ TGCTCCACCAGCATATCCATAAACAGTGTCTTCCCATGATGCAAGTGCCCAACCAAAGCA
JMFS102D07+ GCCCAACCAAAGCA
JMFS061D08+ CAAAGCA
JMFS107E10+ CCATGATGCAAGTGCCCAACCAAAGCA
____________________________________________________________
consensus TGCTCCACCAGCATATCCATAAACAGTGTCTTCCCATGATGCAAGTGCCCAACCAAAGCA
. : . : . : . : . : . :
JMFS165H02+ ACATTCCGTACCAGCGACGGGTTCGACATGAGACCAAGAAGAAACTGCGTCGAAACATAA
JMFS023E08+ ACATTCCGTACCACCGACGGGTTTGACATGAGCCCAAGAAGAAACTGCGTCGAAACATAA
JMFS094F07+ ACATTCCGTACCAGCGACGGGTTCGACATGAGACCAAGAAGAAACTGCGTCGAAACATAA
JMFS102D07+ ACATTCCGTACCAGCGACGGGTTCGACATGAGACCAAGAAGAAACTGCGTCGAAACATAA
JMFS061D08+ ACATTCCGTACCAGCGACGGGTTCGACATGAGACCAAGAAGAAACTGCGTCGAAACATAA
JMFS107E10+ ACATTCCGTACCAGCGACGGGTTCGACATGAGACCAAGAAGAAACTGCGTCGAAACATAA
____________________________________________________________
consensus ACATTCCGTACCAGCGACGGGTTCGACATGAGACCAAGAAGAAACTGCGTCGAAACATAA
. : . : . : . : . : . :
JMFS165H02+ GTAGACGAATCTTTGACGCCCAATTCGAACTTCAAGTTCTTAACAGGCTTGATTATTGGT
JMFS023E08+ GTAGACGAATCTTTGACGCCCAATTCGAACTTCAAGTTCTTAACAGGCTTGATTATTGGT
JMFS094F07+ GTAGACGAATCTTTGACGCCCAATTCGAACTTCAAGTTCTTAACAGGCTTGATTATTGGT
JMFS102D07+ GTAGACGAATCTTTGACGCCCAATTCGAACTTCAAGTTCTTAACAGGCTTGATTATTGGT
JMFS061D08+ GTAGACGAATCTTTGACGCCCAATTCGAACTTCAAGTTCTTAACAGGCTTGATTATTGGT
JMFS107E10+ GTAGACGAATCTTTGACGCCCAATTCGAACTTCAAGTTCTTAACAGGCTTGATTATTGGT
____________________________________________________________
consensus GTAGACGAATCTTTGACGCCCAATTCGAACTTCAAGTTCTTAACAGGCTTGATTATTGGT
. : . : . : . : . : . :
JMFS165H02+ TGCTCAAGGGGCTGTTCATCTTCATCCATCACCAATGTCTCAACTTCTTCCCCATAAACC
JMFS023E08+ TGCTCAAGGGGCTGTTCATCTTCATCCATCACCAATGTCTCAACTTCTTCCCCATAAACC
JMFS094F07+ TGCTCAAGGGGCTGTTCATCTTCATCCATCACCAATGTCTCAACTTCTTCCCCATAAACC
JMFS102D07+ TGCTCAAGGGGCTGTTCATCTTCATCCATCACCAATGTCTCAACTTCTTCCCCATAAACC
JMFS061D08+ TGCTCAAGGGGCTGTTCATCTTCATCCATCACCAATGTCTCAACTTCTTCCCCATAAACC
JMFS107E10+ TGCTCAAGGGGCTGTTCATCTTCATCCATCACCAATGTCTCAACTTCTTCCCCATAAACC
____________________________________________________________
consensus TGCTCAAGGGGCTGTTCATCTTCATCCATCACCAATGTCTCAACTTCTTCCCCATAAACC
. : . : . : . : . : . :
JMFS165H02+ TCTTCTGCAGTAGGATAATACTTCTTGTCCTCAGCAAGCACAACTTGATTATCCATATCA
JMFS023E08+ TCTTCTGCAGTAGGATAATACTTCTTGTCCTCAGCAAGCACAACTTGATTATCCATATCA
JMFS094F07+ TCTTCTGCAGTAGGATAATACTTCTTGTCCTCAGCAAGCACAACTTGATTATCCATATCA
JMFS102D07+ TCTTCTGCAGTAGGATAATACTTCTTGTCCTCAGCAAGCACAACTTGATTATCCATATCA
JMFS061D08+ TCTTCTGCAGTAGGATAATACTTCTTGTCCTCAGCAAGCACAACTTGATTATCCATATCA
JMFS107E10+ TCTTCTGCAGTAGGATAATACTTCTTGTCCTCAGCAAGCACAACTTGATTATCCATATCA
____________________________________________________________
consensus TCTTCTGCAGTAGGATAATACTTCTTGTCCTCAGCAAGCACAACTTGATTATCCATATCA
. : . : . : . : . : . :
JMFS165H02+ ACATCATCCGGGCTCATTAGCCACGCATTCGAAGCTCCATTTTCGCGCTCACCATCAGAC
JMFS023E08+ ACATCATCCGGGCTCATTAACCACCCATTTGAAGCTCCATTTTCGCGCTCACCATCAGAC
JMFS094F07+ ACATCATCCGGGCTCATTAGCCACCCATTCGAAGCTCCATTTTCGCGCTCACCATCAGAC
JMFS102D07+ ACATCATCCGGGCTCATTAGCCACCCATTCGAAGCTCCATTTTCGCGCTCACCATCAGAC
JMFS061D08+ ACATCATCCGGGCTCATTAGCCACCCATTCGAAGCTCCATTTTCGCGCTCACCATCAGAC
JMFS107E10+ ACATCATCCGGGCTCATTAGCCACCCATTCGAAGCTCCATTTTCGCGCTCACCATCAGAC
____________________________________________________________
consensus ACATCATCCGGGCTCATTAGCCACCCATTCGAAGCTCCATTTTCGCGCTCACCATCAGAC
. : . : . : . : . : . :
JMFS165H02+ GCAGCCTCGTCAACGTCGTCCCTGTCAGGCAGCTCCTCATCTTCGTCCTCCCGGTCGCTA
JMFS023E08+ GCAGCCTCGTCAACGTCGTCCCTGTCAGGCAGCTCCTCATCTTCGTCCTCCCGGTCGCTA
JMFS094F07+ GCAGCCTCGTCAACGTCGTCCCTGTCAGGCAGCTCCTCATCTTCGTCCTCCCGGTCGCTA
JMFS102D07+ GCAGCCTCGTCAACGTCGTCCCTGTCAGGCAGCTCCTCATCTTCGTCCTCCCGGTCGCTA
JMFS061D08+ GCAGCCTCGTCAACGTCGTCCCTGTCAGGCAGCTCCTCATCTTCGTCCTCCCGGTCGCTA
JMFS107E10+ GCAGCCTCGTCAACGTCGTCCCTGTCAGGCAGCTCCTCATCTTCGTCCTCCCGGTCGCTA
____________________________________________________________
consensus GCAGCCTCGTCAACGTCGTCCCTGTCAGGCAGCTCCTCATCTTCGTCCTCCCGGTCGCTA
. : . : . : . : . : . :
JMFS165H02+ TCCCGGTCGGACTCAATCTCCGGTCCAATATAATTACCGAACTCATCATACAAACTATCA
JMFS023E08+ TCCCGGTCGGACTCAATCTCCGGTCCAATATAATTACCGAACTCATCATACAAACTATCA
JMFS094F07+ TCCCGGTCGGACTCAATCTCCGGTCCAATATAATTACCGAACTCATCATACAAACTATCA
JMFS102D07+ TCCCGGTCGGACTCAATCTCCGGTCCAATATAATTACCGAACTCATCATACAAACTATCA
JMFS061D08+ TCCCGGTCGGACTCAATCTCCGGTCCAATATAATTACCGAACTCATCATACAAACTATCA
JMFS107E10+ TCCCGGTCGGACTCAATCTCCGGTCCAATATAATTACCGAACTCATCATACAAACTATCA
____________________________________________________________
consensus TCCCGGTCGGACTCAATCTCCGGTCCAATATAATTACCGAACTCATCATACAAACTATCA
. : . : . : . : . : . :
JMFS165H02+ TCCATAGCTAACTAAGGAAACCCTACCTGAAAAATGAACCGGCGTACTAGCTCGCCGCAA
JMFS023E08+ TCCATAGCTAACTAAGGAAACCCTACCTGAAAAATGAACCGGCGTACTAGCTCGC
JMFS094F07+ TCCATAGCTAACTAAGGAAACCCTACCTGAAAAATGAACCGGCGTACTAGCTCGCCGCAA
JMFS102D07+ TCCATAGCTAACTAAGGAAACCCTACCTGAAAAATGAACCGGCGTACTAGCTCGCCGCAA
JMFS061D08+ TCCATAGCTAACTAAGGAAACCCTACCTGAAAAATGAACCGGCGTACTAGCTCGCCGCAA
JMFS107E10+ TCCATAGCTAACTAAGGAAACCCTACCTGAAAAATGAACCGGCGTACTAGCTCGCCGCAA
____________________________________________________________
consensus TCCATAGCTAACTAAGGAAACCCTACCTGAAAAATGAACCGGCGTACTAGCTCGCCGCAA
. : . : . : . : . : . :
JMFS165H02+ GCAAGCTTACTTCGCCTTCTTCCGAAGCTGTTTCCGATGCGAAGCGCTTCG
JMFS094F07+ GCAAGCTTACTTCGCCTTCTTCCGAAGCTGTTTCCGATGCGAAGCGCTTCGAGTATTGC
JMFS102D07+ GCAAGCTTACTTCGCCTTCTTCCGAAGCTGTTTCCGATGCGAAGCGCTTCGAGTATTGCC
JMFS061D08+ GCAAGCTTACTTCGCCTTCTTCCGAAGCTGTTTCCGATGCGAAGCGCTTCGAGTATTGCC
JMFS107E10+ GCAAGCTTACTTCGCCTTCTTCCGAAGCTGTTTCCGATGCGAAGCGCTTCGAGTATTGCC
____________________________________________________________
consensus GCAAGCTTACTTCGCCTTCTTCCGAAGCTGTTTCCGATGCGAAGCGCTTCGAGTATTGCC
. : . : . : . : . : . :
JMFS102D07+ TGGAATCTTTCACTGAAGATTGCTAGCTGCGGAAACTAGGGCTTGGGTTTTTAGAGGA
JMFS061D08+ TGGAATCTTTCACTGAAGATTGCTAGCTGCGGAAACTAGGGCTTGGGTTTTTAGAGGA
JMFS107E10+ TGGAATCTTTCACTGAAGATTGCTAGCTGCGGAAACTAGGGCTTGGGTTTTTAGAGGAGA
____________________________________________________________
consensus TGGAATCTTTCACTGAAGATTGCTAGCTGCGGAAACTAGGGCTTGGGTTTTTAGAGGAGA