Contig 009049:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045D04-                                                        GATGCAAAACTCAT
                      ____________________________________________________________
consensus                                                           GATGCAAAACTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045D04-          AAAACATCATTAATTTCTCAAAAACATGAAAGTTCTTACATTATGGTTTTACAACATCCA
rJMSF034D06-                                       AAGTTCTTACATTATGGTTTTACAACATCCA
rJMSF041F17-                                       AAGTTCTTACATTATGGTTTTACAACATCCA
                      ____________________________________________________________
consensus             AAAACATCATTAATTTCTCAAAAACATGAAAGTTCTTACATTATGGTTTTACAACATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045D04-          GGAAACCGGTCCTGAAAAGCAGGCAGCATCAAATTATTACAAAAATCTGAACACATGTTA
rJMSF034D06-          GGAAACCGGTCCTGAGAAGCAGGCAGCATCAAATTATTACAAAAATCTGAACACATGTTA
rJMSF041F17-          GGAAACCGGTCCTGAGAAGCAGGCAGCATCAAATTATTACAAAAATCTGAACACATGTTA
                      ____________________________________________________________
consensus             GGAAACCGGTCCTGAGAAGCAGGCAGCATCAAATTATTACAAAAATCTGAACACATGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045D04-          CAACATCAAACTGAATAGCACCAATCATGCTGGAAACTGGAAAGGATATGATGCATCATC
rJMSF034D06-          CAACATCAAACTGAATAGCACCAATCATGCTGGAAACTGGAAAGGATATGATGCATCATC
rJMSF041F17-          CAACATCAAACTGAATAGCACCAATCATGCTGGAAACTGGAAAGGATATGATGCATCATC
                      ____________________________________________________________
consensus             CAACATCAAACTGAATAGCACCAATCATGCTGGAAACTGGAAAGGATATGATGCATCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045D04-          CATTATTTTATGTGGAAGGTATGCAACAGCACATGGGGGGTGTATGGGTATGGGCTTTGC
rJMSF034D06-          CATTATTTTATGTGGAAGGTATGCAACAGCACATGGGGGGTGTATGGGTATGGGCTTTGC
rJMSF041F17-          CATTATTTTATGTGGAAGGTATGCAACAGCACATGGGGGGTGTATGGGTATGGGCTTTGC
                      ____________________________________________________________
consensus             CATTATTTTATGTGGAAGGTATGCAACAGCACATGGGGGGTGTATGGGTATGGGCTTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045D04-          AAACACAGCTGGTGCAAATCTTAAATCCCATTTTCTGTGATCCGCGCAATTATGGAGTTC
rJMSF034D06-          AAACACAGCTGGTGCAAATCTTAAATCCCATTTTCTGTGATCCGCGCAATTATGGAGTTC
rJMSF041F17-          AAACACAGCTGGTGCAAATCTTAAATCCCATTTTCTGTGATCCGCGCAATTATGGAGTTC
                      ____________________________________________________________
consensus             AAACACAGCTGGTGCAAATCTTAAATCCCATTTTCTGTGATCCGCGCAATTATGGAGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045D04-          TGGGCGAATATTCATGCCACTGATTTGAGCACGGCACTGAGCACAGCTTCTCTGGTGGGC
rJMSF034D06-          TGGGCGAATATTCATGCCACTGATTTGAGCACGGCACTGAGCACAGCTTCTCTGGTGGGC
rJMSF041F17-          TGGGCGAATATTCATGCCACTGATTTGAGCACGGCACTGAGCACAGCTTCTCTGGTGGGC
                      ____________________________________________________________
consensus             TGGGCGAATATTCATGCCACTGATTTGAGCACGGCACTGAGCACAGCTTCTCTGGTGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045D04-          AAAGCAGGAATTGCCCCTCGCTCCGTCACCGTCAAGGCACCGCAAGCATTCGCAAATCTC
rJMSF034D06-          AAAGCAGGAATTGCCCCTCGCTCCGTCACCGTCAAGGCACCGCAAGCATTCGCAAATCTC
rJMSF041F17-          AAAGCAGGAATTGCCCCTCGCTCCGTCACCGTCAAGGCACCGCAAGCATTCGCAAATCTC
                      ____________________________________________________________
consensus             AAAGCAGGAATTGCCCCTCGCTCCGTCACCGTCAAGGCACCGCAAGCATTCGCAAATCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045D04-          AACGCATCTCTCAGGCGGTCTTCGTCCTGAAGCAGTGTCACGTCAGATGATAATTGTGTC
rJMSF034D06-          AACGCATCTCTCAGGCGGTCTTCGTCCTGAAGCAGTGTCACGTCAGATGATAATTGTGTC
rJMSF041F17-          AACGCATCTCTCAGGCGGTCTTCGTCCTGAAGCAGTGTCACGTCAGATGATAATTGTGTC
JMSF034D06+                                     CTGAAGCAGTGTCACGTCAGATGATAATTGTGTC
                      ____________________________________________________________
consensus             AACGCATCTCTCAGGCGGTCTTCGTCCTGAAGCAGTGTCACGTCAGATGATAATTGTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045D04-          AACAATCCAGCTAC                                              
rJMSF034D06-          AACAATCCAGCTACGAAAGCATCTCCCGCACCGGTGGTGTCCACAGCTTCCACCATCAAA
rJMSF041F17-          AACAATCCAGCTACGAAAGCATCTCCCGCACCGGTGGTGTCCACAGCTTCCACCATCAAA
JMSF034D06+           AACAATCCAGCTACGAAAGCATCTCCCGCACCGGTGGTGTCCACAGCTTCCACCATCAAA
                      ____________________________________________________________
consensus             AACAATCCAGCTACGAAAGCATCTCCCGCACCGGTGGTGTCCACAGCTTCCACCATCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034D06-          CCCGTGACTCTTCCACTAAACTCCTTGGTGTAATATCGACAACCTGCTGGACCTTCAGTG
rJMSF041F17-          CCCGTGACTCTTCCACTAAACTCCTTGGTGTAATATCGACAACCTGCTGGACCTTCAGTG
JMSF034D06+           CCCGTGACTCTTCCACTAAACTCCTTGGTGTAATATCGACAACCTGCTGGACCTTCAGTG
                      ____________________________________________________________
consensus             CCCGTGACTCTTCCACTAAACTCCTTGGTGTAATATCGACAACCTGCTGGACCTTCAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034D06-          ACGAGGAGCAACTTGAGGTTTGGATGGTACAGTTTGCGAACAACATCATCATTATATGGA
rJMSF041F17-          ACGAGGAGCAACTTGAGGTTTGGATGGTACAGTTTGCGAACAACATCATCATTATATGGA
JMSF034D06+           ACGAGGAGCAACTTGAGGTTTGGATGGTACAGTTTGCGAACAACATCATCATTATATGGA
                      ____________________________________________________________
consensus             ACGAGGAGCAACTTGAGGTTTGGATGGTACAGTTTGCGAACAACATCATCATTATATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034D06-          TCTTCTCCTTGTGTCAAAAATGAAATCTCCTCCTCGCTAATCTTAATTATATCAGCAGTC
rJMSF041F17-          TCTTCTCCTTGTGTCAAAAATGAAATCTCCTCCTCGCTAATCTTAATTATATCAGCAGTC
JMSF034D06+           TCTTCTCCTTGTGTCAAAAATGAAATCTCCTCCTCGCTAATCTTAATTATATCAGCAGTC
                      ____________________________________________________________
consensus             TCTTCTCCTTGTGTCAAAAATGAAATCTCCTCCTCGCTAATCTTAATTATATCAGCAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034D06-          TCCCATATGCTAAAGATTCCTTCTCGAGCACTTTCTGCTGATGGCCATA           
rJMSF041F17-          TCCCATATGCTAAAGATTCCTTCTCGAGCACTTTCTGCTGATGGCCATAGTGGAAGCCTC
JMSF034D06+           TCCCATATGCTAAAGATTCCTTCTCGAGCACTTTCTGCTGATGGCCATAGTGGAAGCCTC
                      ____________________________________________________________
consensus             TCCCATATGCTAAAGATTCCTTCTCGAGCACTTTCTGCTGATGGCCATAGTGGAAGCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041F17-          AGGNTTGGATCATAAGACAAAA                                      
JMSF034D06+           AGGTTTGGATCATAAGACAAAATTACACCAGCATCCTTTGCAGCTTTAGCTGCAGCAACA
                      ____________________________________________________________
consensus             AGGTTTGGATCATAAGACAAAATTACACCAGCATCCTTTGCAGCTTTAGCTGCAGCAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034D06+           TGGGCTGATTTGCATGGTTCTGTAATCAAGCTTATAGAACCGTAATGGAAAATCTTTGCC
                      ____________________________________________________________
consensus             TGGGCTGATTTGCATGGTTCTGTAATCAAGCTTATAGAACCGTAATGGAAAATCTTTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034D06+           TTCTTAATTAATTCAAAATCGAGTTCACTCGGTTTCAGCAACATATCAGCACTAGGATTA
                      ____________________________________________________________
consensus             TTCTTAATTAATTCAAAATCGAGTTCACTCGGTTTCAGCAACATATCAGCACTAGGATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034D06+           CGGTAAAACATGAACTCGCGCTCCCCATCTTTTCTAAGAGTTACAAATGCTAAGGCAGTG
JMFF045D04+                           CGCGCTCCCCATCTTTTCTAAGAGTTACAAATGCTAAGGCAGTG
JMSF041F17+                                              AAGAGTTACAAATGNTAAGGCAGTG
                      ____________________________________________________________
consensus             CGGTAAAACATGAACTCGCGCTCCCCATCTTTTCTAAGAGTTACAAATGCTAAGGCAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034D06+           CGAGCACCAGGATCAAAGCGCATCCCTTCACTGTTCACATTATTCTCCTTCAAAATATCA
JMSF001F14+                                                             CAAAATATCA
JMFF045D04+           CGAGCACCAGGATCAAAGCGCATCCCTTCACTGTTCACATTATTCTCCTTCAAAATATCA
JMSF041F17+           CGAGCACCAGGATCAAAGCGCATCCCTTCACTGTTCACATTATTCTCCTTCAAAATATCA
                      ____________________________________________________________
consensus             CGAGCACCAGGATCAAAGCGCATCCCTTCACTGTTCACATTATTCTCCTTCAAAATATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF034D06+           GC                                                          
JMSF001F14+           GCAAGCATGTACCCGAATTCATCTTCACCAACCTTGCCTATAAAAGCTGATGAACCACCA
JMFF045D04+           GCAAGCATGTACCCGAATTCATCTTCACCAACCTTGCCTATAAAAGCTGATGAACCACCA
JMSF041F17+           GCAAGCATGTACCCGAATTCATCTTCACCAACCTTGCCTATAAAAGCTGATGAACCACCA
                      ____________________________________________________________
consensus             GCAAGCATGTACCCGAATTCATCTTCACCAACCTTGCCTATAAAAGCTGATGAACCACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001F14+           AGGCGAGATATGCCAACAGCAACATTAGCTGGTGCACCACCTGGAGCCTTTTTAAATGCA
JMFF045D04+           AGGCGAGATATGCCAACAGCAACATTAGCTGGTGCACCACCTGGAGCCTTTTTAAATGCA
JMSF041F17+           AGGCGAGATATGCCAACAGCAACATTAGCTGGTGCACCACCTGGAGCCTTTTTAAATGCA
                      ____________________________________________________________
consensus             AGGCGAGATATGCCAACAGCAACATTAGCTGGTGCACCACCTGGAGCCTTTTTAAATGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001F14+           GGTGCTTCAGCCAAAGAAAGTCCACTTGTGGTTGGAACGAAATCGATCAACATCTCCCCA
JMFF045D04+           GGTGCTTCAGCCAAAGAAAGTCCACTTGTGGTTGGAACGAAATCGATCAACATCTCCCCA
JMSF041F17+           GGTGCTTCAGCCAAAGAAAGTCCACTTGTGGTTGGAACGAAATCGATCAACATCTCCCCA
                      ____________________________________________________________
consensus             GGTGCTTCAGCCAAAGAAAGTCCACTTGTGGTTGGAACGAAATCGATCAACATCTCCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001F14+           AAGCACACCACAAGTTCAGATTCATCCTTCTTTTCAAGTGCCCCATTATCGCTTGGCTGT
JMFF045D04+           AAGCACACCACAAGTTCAGATTCATCCTTCTTTTCAAGTGCCCCATTATCGCTTGGCTGT
JMSF041F17+           AAGCACACCACAAGTTCAGATTCATCCTTCTTTTCAAGTGCCCCATTATCGCTTGGCTGT
                      ____________________________________________________________
consensus             AAGCACACCACAAGTTCAGATTCATCCTTCTTTTCAAGTGCCCCATTATCGCTTGGCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001F14+           GCTCTTCCTTGAAGTCTGAGGGTTGGTGGTGGGGGCCTGCATCTCGGAAAAGCAGACGGA
JMSF011A13+                                                         GAAAAGCAGACGGA
JMFF045D04+           GCTCTTCCTTGAAGTCTGAGGGTTGGTGGTGGGGGCCTGCATCTCGGAAAAGCAGACGGA
JMSF041F17+           GCTCTTCCTTGAAGTCTGAGGGTTGGTGGTGGGGGCCTGCATCTCGGAAAAGCAGACGGA
                      ____________________________________________________________
consensus             GCTCTTCCTTGAAGTCTGAGGGTTGGTGGTGGGGGCCTGCATCTCGGAAAAGCAGACGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001F14+           CCGGAGAGTTGAGACCAGCCAAAACTTCTCCGACCGGAAGAGACTGAGACTGAGACTCCG
JMSF011A13+           CCGGAGAGTTGAGACCAGCCAAAACTTCTCCGACCGGAAGAGACTGAGACTGAGACTCCG
JMFF045D04+           CCGGAGAGTTGAGACCAGCCAAAACTTCTCCGACCGGAAGAGACTGAGACTGAGACTCCG
JMSF041F17+           CCGGAGAGTTGAGACCAGCCAAAACTTCTCCGACCGGAAGAGACTGAGACTGAGACTCCG
                      ____________________________________________________________
consensus             CCGGAGAGTTGAGACCAGCCAAAACTTCTCCGACCGGAAGAGACTGAGACTGAGACTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF001F14+           GTGAAGCAGAGAGTAGAAGAATGAAGAGCGGCCAT                         
JMSF011A13+           GTGAAGCAGAGAGTAGAAGAATGAAGAGCGGCCATATATTAAGAAGCAGGCAGTGAGCTG
JMFF045D04+           GTGAAGCAGAGAGTAGAAGAATGAAGAGCGGCCATATATTAAGAAGCAGGCAGTGAGCTG
JMSF041F17+           GTGAAGCAGAGAGTAGAAGAATGAAGAGCGGCCATATATTAAGAAGCAGGCAGTGAGCTG
                      ____________________________________________________________
consensus             GTGAAGCAGAGAGTAGAAGAATGAAGAGCGGCCATATATTAAGAAGCAGGCAGTGAGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF011A13+           AGCTTAGGTATTACACCCAAACAAATACGTAAAGGGGGAATCCCTAGCTATTGTGGCATT
JMFF045D04+           AGCTTAGGTATTACACCCAAACAAATACGTAAAGGGGAAATCCCTAGCTATTGTGGCATT
JMSF041F17+           AGCTTAGGTATTACACCCAAACAAATACGTAAAGGGGAAATCCCTAGCTATTGTGGCATT
JMFS067E03+                                                 AATCCCTAGCTATTGTGGCATT
                      ____________________________________________________________
consensus             AGCTTAGGTATTACACCCAAACAAATACGTAAAGGGGAAATCCCTAGCTATTGTGGCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF011A13+           GGGAAAATCAGTTGGGATGAACCCTAATTTCAATGGCTTTGCT                 
JMFF045D04+           GGGAAAATCAGTTGGGATGAACCCTAATTTCAATGGCTTTGCT                 
JMSF041F17+           GGGAAAATCAGTTGGGATGAACCCTAATTTCAATGGCTTTGCTGACGAGACTGAGAGAGT
JMFS067E03+           GGGAAAATCAGTTGGGATGAACCCTAATTTCAATGGCTTTGCTGACGAGACTGAGAGAGT
                      ____________________________________________________________
consensus             GGGAAAATCAGTTGGGATGAACCCTAATTTCAATGGCTTTGCTGACGAGACTGAGAGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF041F17+           AGCGGAGAAAGCAAAGAGAAAAAGGAAGCGTCACTTGTCAGCTTGCCATGTGTGACGTGT
JMFS067E03+           AGCGGAGAAAGCAAAGAGAAAAAGGAAGCGTCACTTGTCAGCTTGCCATGTGTGACGTGT
                      ____________________________________________________________
consensus             AGCGGAGAAAGCAAAGAGAAAAAGGAAGCGTCACTTGTCAGCTTGCCATGTGTGACGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF041F17+           CTGCACTCTGCTACTCTGCTACTCTGCTATCTCTGCCATTGGACACTTGTATGATTCT  
JMFS067E03+           CTGCACTCTGCTACTCTGCTACTCTGCTA-CTCTGCCATTGGACACTTGTATGATTCTAT
                      ____________________________________________________________
consensus             CTGCACTCTGCTACTCTGCTACTCTGCTATCTCTGCCATTGGACACTTGTATGATTCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS067E03+           ATCAACTATGGAGGACACTGCAATTACAAATTACTCCCTCTCATTTCATAAAGCTGAAGC
                      ____________________________________________________________
consensus             ATCAACTATGGAGGACACTGCAATTACAAATTACTCCCTCTCATTTCATAAAGCTGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS067E03+           CTGATTCAAATTATTTTTATTTCATTTTTTATAATGTTAACATTTATATATTAATTAATT
                      ____________________________________________________________
consensus             CTGATTCAAATTATTTTTATTTCATTTTTTATAATGTTAACATTTATATATTAATTAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS067E03+           AAAAATATTATTAAATACAAAAAATATATTTAAAAAATACTAAAAAAAAGAAGTAAAGAA
                      ____________________________________________________________
consensus             AAAAATATTATTAAATACAAAAAATATATTTAAAAAATACTAAAAAAAAGAAGTAAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS067E03+           AAAATAATTTGTTTAATTAATAAATAATAAACATGACAGATAACTATTATCACCATCTTC
                      ____________________________________________________________
consensus             AAAATAATTTGTTTAATTAATAAATAATAAACATGACAGATAACTATTATCACCATCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS067E03+           CGCTTATTTTCTAGCCACCCTCCTTTGCTTTTTTCATTATTATCCTCTATCGTCGCAAAA
                      ____________________________________________________________
consensus             CGCTTATTTTCTAGCCACCCTCCTTTGCTTTTTTCATTATTATCCTCTATCGTCGCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS067E03+           TTTTCTTTCCAGCTATCATCTTCAGCTTCTTGTGTTGAAATTTGTGTTTATAATTTTCAA
                      ____________________________________________________________
consensus             TTTTCTTTCCAGCTATCATCTTCAGCTTCTTGTGTTGAAATTTGTGTTTATAATTTTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS067E03+           AAATAAATTTAAAATTTTAGAATAATGAAAAACTGAAAAAAGAGTAGCCAGACCTTTAAA
                      ____________________________________________________________
consensus             AAATAAATTTAAAATTTTAGAATAATGAAAAACTGAAAAAAGAGTAGCCAGACCTTTAAA