Contig 009048:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS067B02Sequence338009048 (2)
JMSF020P17Sequence671011860 (2)ref|XP_009619467.1|3e-133PREDICTED: NAC domain-containing protein 78-like [Nicotiana tomentosiformis]718009048 (2)emb|CDO99813.1|9e-73unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF020P17+                           TCTATGCAAGGCTCCCCAGAGTCCAGTGGAGCCGCAGGGCCTT
                      ____________________________________________________________
consensus                              TCTATGCAAGGCTCCCCAGAGTCCAGTGGAGCCGCAGGGCCTT
 
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rJMSF020P17+          CCATTTGTTTGCAAGCGAGAGAGATCGGAGGATCCCGAGCCTCTCTCATTGGCCCAAGCG
                      ____________________________________________________________
consensus             CCATTTGTTTGCAAGCGAGAGAGATCGGAGGATCCCGAGCCTCTCTCATTGGCCCAAGCG
 
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rJMSF020P17+          AAAAGATCCAAGCACGATGATCCGAGCTCGAGCAATGCAAATGGTTCAGAAGATTCGACC
                      ____________________________________________________________
consensus             AAAAGATCCAAGCACGATGATCCGAGCTCGAGCAATGCAAATGGTTCAGAAGATTCGACC
 
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rJMSF020P17+          ACAATCCAGGAACCTCCAACAGCAATGATGACGACGACAACAACCACAACAAATTACTCT
                      ____________________________________________________________
consensus             ACAATCCAGGAACCTCCAACAGCAATGATGACGACGACAACAACCACAACAAATTACTCT
 
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rJMSF020P17+          CCCGCTCTCTTAGAATTCCCCTTGTTAGGGTCCATTGAACCCAAGGAAAGCCACCCTACA
                      ____________________________________________________________
consensus             CCCGCTCTCTTAGAATTCCCCTTGTTAGGGTCCATTGAACCCAAGGAAAGCCACCCTACA
 
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rJMSF020P17+          AACGTCCCCACCTTCGACTCCTCCACGCTCGAGAAGTCTGTTCCCCCCGGCTACCTAAAG
                      ____________________________________________________________
consensus             AACGTCCCCACCTTCGACTCCTCCACGCTCGAGAAGTCTGTTCCCCCCGGCTACCTAAAG
 
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rJMSF020P17+          TTCATCAGCAACCTGGAGAACGAAATCCTAAACGTCTCCATGGAGAGGGAGACGCTGAAG
                      ____________________________________________________________
consensus             TTCATCAGCAACCTGGAGAACGAAATCCTAAACGTCTCCATGGAGAGGGAGACGCTGAAG
 
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rJMSF020P17+          ATTGAAGTGATGAGAGCCCAAGCCATGATCAACATTCTTCAATCGCGCATCGACCTCCTG
JMFS067B02-                                 CCATGATCAACATTCTTCAATCGCGCATCGACCTCCTG
                      ____________________________________________________________
consensus             ATTGAAGTGATGAGAGCCCAAGCCATGATCAACATTCTTCAATCGCGCATCGACCTCCTG
 
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rJMSF020P17+          AACAAGGAGAACGAGGACCTAAGAAGAGTTGTCCGAGGCGGTTGAAGGCGTCGTAGTAGC
JMFS067B02-           AACAAGGAGAACGAGGACCTAAGAAGAGTTGTCCGAGGCGGTTGAAGGCGTCGTAGTAGC
                      ____________________________________________________________
consensus             AACAAGGAGAACGAGGACCTAAGAAGAGTTGTCCGAGGCGGTTGAAGGCGTCGTAGTAGC
 
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rJMSF020P17+          AGCAGTTCCATGTATCCTAGATTTGTAGTTCTTCTTGGCTCAATCCTTTTATTGTTGTGA
JMFS067B02-           AGCAGTTCCATGTATCCTAGATTTGTAGTTCTTCTTGGCTCAATCCTTTTATTGTTGTGA
                      ____________________________________________________________
consensus             AGCAGTTCCATGTATCCTAGATTTGTAGTTCTTCTTGGCTCAATCCTTTTATTGTTGTGA
 
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rJMSF020P17+          AGCATGCATCTCCAGTTGCATGTTTTGAGGAGTAAAAGGATGTTTCAAGTGGTAGCCATC
JMFS067B02-           AGCATGCATCTCCAGTTGCATGTTTTGAGGAGTAAAAGGATGTTTCAAGTGGTAGCCATC
                      ____________________________________________________________
consensus             AGCATGCATCTCCAGTTGCATGTTTTGAGGAGTAAAAGGATGTTTCAAGTGGTAGCCATC
 
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rJMSF020P17+          TGTCGACAACTCTGTAATATGATGTTCCCTTAGCTGTTTATTGTGTACCAGTAGCTATAG
JMFS067B02-           TGTCGACAACTCTGTAATATGATGTTCCCTTAGCTGTTTATTGTGTACCAGTAGCTATAG
                      ____________________________________________________________
consensus             TGTCGACAACTCTGTAATATGATGTTCCCTTAGCTGTTTATTGTGTACCAGTAGCTATAG
 
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rJMSF020P17+          ACATTATTGCCCATC                                             
JMFS067B02-           ACATTATTGCCCATCTTTTGAAACAGTTAAATAAAGCAAACTGGAGTTTCTCATTGTTTT
                      ____________________________________________________________
consensus             ACATTATTGCCCATCTTTTGAAACAGTTAAATAAAGCAAACTGGAGTTTCTCATTGTTTT