Contig 009044:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS059H05Sequence629009044 (4)ref|XP_008389816.1|3e-27PREDICTED: uncharacterized protein LOC103452108 isoform X2 [Malus domestica]
JMSF023A15Sequence653009044 (4)ref|XP_008389816.1|4e-33PREDICTED: uncharacterized protein LOC103452108 isoform X2 [Malus domestica]652000447 (4)ref|XP_007225202.1|1e-60hypothetical protein PRUPE_ppa002076mg [Prunus persica] gb|EMJ26401.1| hypotheti
JMSF031K09Sequence658009044 (4)ref|XP_008389816.1|5e-35PREDICTED: uncharacterized protein LOC103452108 isoform X2 [Malus domestica]677000447 (4)ref|XP_007225202.1|2e-56hypothetical protein PRUPE_ppa002076mg [Prunus persica] gb|EMJ26401.1| hypotheti
JMSF037F12Sequence646009044 (4)ref|XP_008389816.1|4e-33PREDICTED: uncharacterized protein LOC103452108 isoform X2 [Malus domestica]632000447 (4)ref|XP_007225202.1|8e-66hypothetical protein PRUPE_ppa002076mg [Prunus persica] gb|EMJ26401.1| hypotheti

Alignment

This contig is upended


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JMSF031K09+                                                          GGTGGTTGAGAAC
JMSF037F12+                                                                    AAC
JMSF023A15+                                                                    AAC
                      ____________________________________________________________
consensus                                                            GGTGGTTGAGAAC
 
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JMSF031K09+           TCAGAATCTCTTCTGCTAGACCATCCATTTTGCGAAACACCTCCATTGATCGATTGTTAA
JMSF037F12+           TCAGAATCTCTTCTGCTAGACCATCCATTTTGCGAAACACCTCCATTGATCGATTGTTAA
JMSF023A15+           TCAGAATCTCTTCTGCTAGACCATCCATTTTGCGAAACACCTCCATTGATCGATTGTTAA
JMFS059H05+                                          GCGAAACACCTCCATTGATCGATTGTTAA
                      ____________________________________________________________
consensus             TCAGAATCTCTTCTGCTAGACCATCCATTTTGCGAAACACCTCCATTGATCGATTGTTAA
 
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JMSF031K09+           TAAAGTGAGCTTGAGGGTGGGTAGGAAAGACCTTGCTCTTCTCCAAGACTGCACATTTCA
JMSF037F12+           TAAAGTGAGCTTGAGGGTGGGTAGGAAAGACCTTGCTCTTCTCCAAGACTGCACATTTCA
JMSF023A15+           TAAAGTGAGCTTGAGGGTGGGTAGGAAAGACCTTGCTCTTCTCCAAGACTGCACATTTCA
JMFS059H05+           TAAAGTGAGCTTGAGGGTGGGTAGGAAAGACCTTGCTCTTCTCCAAGACTGCACATTTCA
                      ____________________________________________________________
consensus             TAAAGTGAGCTTGAGGGTGGGTAGGAAAGACCTTGCTCTTCTCCAAGACTGCACATTTCA
 
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JMSF031K09+           CACCCAATTTGGTGAGGAGTATAGAGAGAGCGAGCCCAACTGGGCCGGCACCGATTATCA
JMSF037F12+           CACCCAATTTGGTGAGGAGTATAGAGAGAGCGAGCCCAACTGGGCCGGCACCGATTATCA
JMSF023A15+           CACCCAATTTGGTGAGGAGTATAGAGAGAGCGAGCCCAACTGGGCCGGCACCGATTATCA
JMFS059H05+           CACCCAATTTGGTGAGGAGTATAGAGAGAGCGAGCCCAACTGGGCCGGCACCGATTATCA
                      ____________________________________________________________
consensus             CACCCAATTTGGTGAGGAGTATAGAGAGAGCGAGCCCAACTGGGCCGGCACCGATTATCA
 
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JMSF031K09+           GAACGGGCAAGATTGGATCTTCGCCGTTTAGTGAATGCGAGTTGGATAATGCTCTTTGTT
JMSF037F12+           GAACGGGCAAGATTGGATCTTCGCCGTTTAGTGAATGCGAGTTGGATAATGCTCTTTGTT
JMSF023A15+           GAACGGGCAAGATTGGATCTTCGCCGTTTAGTGAATGCGAGTTGGATAATGCTCTTTGTT
JMFS059H05+           GAACGGGCAAGATTGGATCTTCGCCGTTTAGTGAATGCGAGTTGGATAATGCTCTTTGTT
                      ____________________________________________________________
consensus             GAACGGGCAAGATTGGATCTTCGCCGTTTAGTGAATGCGAGTTGGATAATGCTCTTTGTT
 
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JMSF031K09+           GAGTGTGGCTGTGGTTGAAGGACAGAGAAGTGATTCTTGTATGGGCAAGGTAGAGATTCC
JMSF037F12+           GAGTGTGGTTGTGGTTGAAGGACAGAGAAGTGATTCTTGTATGGGCAAGGTAGAGATTCC
JMSF023A15+           GAGTGTGGTTGTGGTTGAAGGACAGAGAAGTGATTCTTGTATGGGCAAGGTAGAGATTCC
JMFS059H05+           GAGTGTGGTTGTGGTTGAAGGACAGAGAAGTGATTCTTGTATGGGCAAGGTAGAGATTCC
                      ____________________________________________________________
consensus             GAGTGTGGTTGTGGTTGAAGGACAGAGAAGTGATTCTTGTATGGGCAAGGTAGAGATTCC
 
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JMSF031K09+           GTAAGCTTCTTCTCCCTGCAAGTCCCAGTAAAAGAAGGGACGTCGATTGGGCCATGGCGT
JMSF037F12+           GTAAGCTTCTTCTCCCTGCAAGTCCCAGTAAAAGAAGGGACGTCGATTGGGCCATGGCGT
JMSF023A15+           GTAAGCTTCTTCTCCCTGCAAGTCCCAGTAAAAGAAGGGACGTCGATTGGGCCATGGCGT
JMFS059H05+           GTAAGCTTCTTCTCCCTGCAAGTCCCAGTAAAAGAAGGGACGTCGATTGGGCCATGGCGT
                      ____________________________________________________________
consensus             GTAAGCTTCTTCTCCCTGCAAGTCCCAGTAAAAGAAGGGACGTCGATTGGGCCATGGCGT
 
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JMSF031K09+           TCTAGGATCGTACAACGCAAGCAAGCATAGAACAGCTCCTACAAACTTTCATAAAGGTAT
JMSF037F12+           TCTAGGATCGTACAACGCAAGCAAGCATAGAACAGCTCCTACAAACTTTCATAAAGGTAT
JMSF023A15+           TCTAGGATCGTACAACGCAAGCAAGCATAGAACAGCTCCTACAAACTTTCATAAAGGTAT
JMFS059H05+           TCTAGGATCGTACAACGCAAGCAAGCATAGAACAGCTCCTACAAACTTTCATAAAGGTAT
                      ____________________________________________________________
consensus             TCTAGGATCGTACAACGCAAGCAAGCATAGAACAGCTCCTACAAACTTTCATAAAGGTAT
 
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JMSF031K09+           ATTTGATGACTAGAACTGTTAAAACTGTCTAGCGTAGCCCATTTCTTATACTGGTTAGAA
JMSF037F12+           ATTTGATGACTAGAACTGTTAAAACTGTCTAGCGTAGCCCATTTCTTATACTGGTTAGAA
JMSF023A15+           ATTTGATGACTAGAACTGTTAAAACTGTCTAGCGTAGCCCATTTCTTATACTGGTTAGAA
JMFS059H05+           ATTTGATGACTAGAACTGTTAAAACTGTCTAGCGTAGCCCATTTCTTATACTGGTTAGAA
                      ____________________________________________________________
consensus             ATTTGATGACTAGAACTGTTAAAACTGTCTAGCGTAGCCCATTTCTTATACTGGTTAGAA
 
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JMSF031K09+           TTTCACAACCCAACCCATGGTCCGACGGTCTGGCAGGTTAAACAGCCCCCGTCCGGAGTA
JMSF037F12+           TTTCACAACCCAACCCATGGTCCGACGGTCTGGCAGGTTAAACAGCCCCCGTCCGGAGTA
JMSF023A15+           TTTCACAACCCAACCCATGGTCCGACGGTCTGGCAGGTTAAACAGCCCCCGTCCGGAGTA
JMFS059H05+           TTTCACAACCCAACCCATGGTCCGACGGTCTGGCAGGTTAAACAGCCCCCGTCCGGAGTA
                      ____________________________________________________________
consensus             TTTCACAACCCAACCCATGGTCCGACGGTCTGGCAGGTTAAACAGCCCCCGTCCGGAGTA
 
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JMSF031K09+           GGGAGACTGCCAGACTGGGAGAAGGCCGAAACGCAGCCCGCAGGTCGCCAGTCGCTGGTC
JMSF037F12+           GGGAGACTGCCAGACTGGGAGAAGGCCGAAACGCAGCCCGCAGGTCGCCAGTCGCTGGTC
JMSF023A15+           GGGAGACTGCCAGACTGGGAGAAGGCCGAAACGCAGCCCGCAGGTCGCCAGTCGCTGGTC
JMFS059H05+           GGGAGACTGCCAGACTGGGAGAAGGCCGAAACGCAGCCCGCAGGTCGCCAGTCGCTGGTC
                      ____________________________________________________________
consensus             GGGAGACTGCCAGACTGGGAGAAGGCCGAAACGCAGCCCGCAGGTCGCCAGTCGCTGGTC
 
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JMSF031K09+           GGAGACTCGGAGTTCGCACTTCCGCTTCGGCCTTCGCACTTT                  
JMSF037F12+           GGAGACTCGGAGTTCGCACTTCCGCTTCGGCCTTCGCACTTT                  
JMSF023A15+           GGAGACTCGGAGTTCGCACTTCCGCTTCGGCCTTCGCACTTT                  
JMFS059H05+           GGAGACTCGGAGTTCGCACTTCCGCTTCGGCCTTCGCACTTTGCAGTTCGTAGAGAGCAG
                      ____________________________________________________________
consensus             GGAGACTCGGAGTTCGCACTTCCGCTTCGGCCTTCGCACTTTGCAGTTCGTAGAGAGCAG