Contig 009041:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS011D08Sequence618009041 (2)ref|XP_009596316.1|6e-26PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X
JMFS058G06Sequence627009041 (2)ref|XP_009596316.1|5e-22PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS011D08+ TAAG
                      ____________________________________________________________
consensus TAAG
 
. : . : . : . : . : . :
JMFS011D08+ CAAGGCATACATTTCCATACGCATTCCAACATATGCAAAAATATGCACAAGCATCTTAAA
JMFS058G06+ TGCAAAAATATGCACAAGCATCTTAAA
                      ____________________________________________________________
consensus CAAGGCATACATTTCCATACGCATTCCAACATATGCAAAAATATGCACAAGCATCTTAAA
 
. : . : . : . : . : . :
JMFS011D08+ GGCGGTGATCGATTGGAAAAGCCCATACCTTTCCATTGCTCTTTCAAAACTAATCTCTCT
JMFS058G06+ GGCGGTGATCGATTGGAAAAGCCCATACCTTTCCATTGCTCTTTCAAAACTAATCTCTCT
                      ____________________________________________________________
consensus GGCGGTGATCGATTGGAAAAGCCCATACCTTTCCATTGCTCTTTCAAAACTAATCTCTCT
 
. : . : . : . : . : . :
JMFS011D08+ AGCTGCCTCCCAGCTCAATGATTTGTACACCCTCACAACAACAGAACATAGTCCCAGCTC
JMFS058G06+ AGCTGCCTCCCAGCTCAATGATTTGTACACCCTCACAACAACAGAACATAGTCCCAGCTC
                      ____________________________________________________________
consensus AGCTGCCTCCCAGCTCAATGATTTGTACACCCTCACAACAACAGAACATAGTCCCAGCTC
 
. : . : . : . : . : . :
JMFS011D08+ CTTGCACCTATGCAGTCTTTTTCTCGAAATAATCGGAACAATTGGCTCATATTCCCCACT
JMFS058G06+ CTTGCACCTATGCAGTCTTTTTCTCGAAATAATCGGAACAATTGGCTCATATTCCCCACT
                      ____________________________________________________________
consensus CTTGCACCTATGCAGTCTTTTTCTCGAAATAATCGGAACAATTGGCTCATATTCCCCACT
 
. : . : . : . : . : . :
JMFS011D08+ GCTTTCACCATTTGAACAAGAATCAGAATCATCCAATACTAAAGCGGACGAAACACCACC
JMFS058G06+ GCTTTCACCATTTGAACAAGAATCAGAATCATCCAATACTAAAGCGGACGAAACACCACC
                      ____________________________________________________________
consensus GCTTTCACCATTTGAACAAGAATCAGAATCATCCAATACTAAAGCGGACGAAACACCACC
 
. : . : . : . : . : . :
JMFS011D08+ AAAATTTCGACAATAGCCTCTTTCTACAACGATTTTCTTCCTTCCGAAAACACCCGATTC
JMFS058G06+ AAAATTTCGACAATAGCCTCTTTCTACAACGATTTTCTTCCTTCCGAAAACACCCGATTC
                      ____________________________________________________________
consensus AAAATTTCGACAATAGCCTCTTTCTACAACGATTTTCTTCCTTCCGAAAACACCCGATTC
 
. : . : . : . : . : . :
JMFS011D08+ TCGCAACCCCACAAATATGAAATAAAAAGAGGATCTTTTTGGAAATATAGACAGACCCAT
JMFS058G06+ TCGCAACCCCACAAATATGAAATAAAAAGAGGATCTTTTTGGAAATATAGACAGACCCAT
                      ____________________________________________________________
consensus TCGCAACCCCACAAATATGAAATAAAAAGAGGATCTTTTTGGAAATATAGACAGACCCAT
 
. : . : . : . : . : . :
JMFS011D08+ AAAGCAAAACCTTGAGCTATAGAGAAATTATTGTGATTGCACAACAGAACAGGCCTCCCC
JMFS058G06+ AAAGCAAAACCTTGAGCTATAGAGAAATTATTGTGATTGCACAACAGAACAGGCCTCCCC
                      ____________________________________________________________
consensus AAAGCAAAACCTTGAGCTATAGAGAAATTATTGTGATTGCACAACAGAACAGGCCTCCCC
 
. : . : . : . : . : . :
JMFS011D08+ ATAGCAGCCCACATCACATCATACCCAAATCA--------------TTCTCCGCCACTTC
JMFS058G06+ ATAGCAGCCCACATCACATCATACCCAAATCAAGAGAGCGCCGTACTTCTCCGCCACTTC
                      ____________________________________________________________
consensus ATAGCAGCCCACATCACATCATACCCAAATCAAGAGAGCGCCGTACTTCTCCGCCACTTC
 
. : . : . : . : . : . :
JMFS011D08+ GAGCTGCTCTTCCCCGGTGGACTGTTAGCTTTCTACCAGTTAGAAGTGGCAGTGCCCAGC
JMFS058G06+ GAGCTGCTCTTCCCCGGTGGACTGTTAGCTTTCTACCAGTTAGAAGTGGCAGTGCCCAGC
                      ____________________________________________________________
consensus GAGCTGCTCTTCCCCGGTGGACTGTTAGCTTTCTACCAGTTAGAAGTGGCAGTGCCCAGC
 
. : . : . : . : . : . :
JMFS011D08+ TCCGGAGCTTCAATTGACATCGTTTTTG
JMFS058G06+ TCCGGAGCTTCAATTGACATCGTTTTTGTGTTCGTAGAGTGAGATAAGCGGTAAAGGAGA
                      ____________________________________________________________
consensus TCCGGAGCTTCAATTGACATCGTTTTTGTGTTCGTAGAGTGAGATAAGCGGTAAAGGAGA