Contig 009040:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS050G11Sequence546009040 (3)emb|CDP17004.1|1e-61unnamed protein product [Coffea canephora]
JMFS058B12Sequence639009040 (3)emb|CDP17004.1|8e-85unnamed protein product [Coffea canephora]
JMFS063F03Sequence626009040 (3)ref|XP_011071264.1|2e-85PREDICTED: RNA-binding protein 10 [Sesamum indicum]

Alignment

This contig is upended


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JMFS063F03+                                    TTGGATGGCATCTGGTAATGAGGCAGCCTTGTCAG
                      ____________________________________________________________
consensus                                      TTGGATGGCATCTGGTAATGAGGCAGCCTTGTCAG
 
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JMFS063F03+           TTGATGTCATAGTAGCAGGTGCAGATATAACAACCTTTCTTGCATTGGATCCATCAGCAG
                      ____________________________________________________________
consensus             TTGATGTCATAGTAGCAGGTGCAGATATAACAACCTTTCTTGCATTGGATCCATCAGCAG
 
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JMFS063F03+           ACTTGGCATTTTCACTTTGTTTCTGAGCTGTTTTGTCATTCTGATCACCGCAGGGAACAT
                      ____________________________________________________________
consensus             ACTTGGCATTTTCACTTTGTTTCTGAGCTGTTTTGTCATTCTGATCACCGCAGGGAACAT
 
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JMFS063F03+           ATTGTAGAGTCTGGTGATCATATGAATACCAAACCCCACTGTTACCATCATAGTATAAAC
                      ____________________________________________________________
consensus             ATTGTAGAGTCTGGTGATCATATGAATACCAAACCCCACTGTTACCATCATAGTATAAAC
 
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JMFS063F03+           CTGTATTTCCGTCATAGTAGAACCCAGAAGCAGCATCATAATAATAGCCAGAGGCTTCGT
JMFS058B12+                              GAACCCAGAAGCAGCATCATAATAATAGCCAGAGGCTTCGT
                      ____________________________________________________________
consensus             CTGTATTTCCGTCATAGTAGAACCCAGAAGCAGCATCATAATAATAGCCAGAGGCTTCGT
 
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JMFS063F03+           CCCACACAAACCCAGATTGTGGAGCAGAAGCATCATTTTGATGTGCAACTTCACCCTGCT
JMFS050G11+                                 AGCAGAAGCATCATTTTGATGTGCAACTTCACCCTGCT
JMFS058B12+           CCCACACAAACCCAGATTGTGGAGCAGAAGCATCATTTTGATGTGCAACTTCACCCTGCT
                      ____________________________________________________________
consensus             CCCACACAAACCCAGATTGTGGAGCAGAAGCATCATTTTGATGTGCAACTTCACCCTGCT
 
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JMFS063F03+           CTTGTGCAACAGTGGATTGCTTTTCATCTGGATTGTATTCCTTTGGTGCCCATCCAACAG
JMFS050G11+           CTTGTGCAACAGTGGATTGCTTTTCATTTGGATTGTATTCCTTTGGTGCCCATCCAACAG
JMFS058B12+           CTTGTGCAACAGTGGATTGCTTTTCATCTGGATTGTATTCCTTTGGTGCCCATCCAACAG
                      ____________________________________________________________
consensus             CTTGTGCAACAGTGGATTGCTTTTCATCTGGATTGTATTCCTTTGGTGCCCATCCAACAG
 
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JMFS063F03+           CATCATACTGTTGAGCAAAAGCTGCAGCTTCAATGGCAGCAGCAGCAAGGCTACTAGCTT
JMFS050G11+           CATCATACTGTTGAGCAAAAGCTGCAGCTTCAATGGCAGCAGCAGCAAGGCTACTAGCTT
JMFS058B12+           CATCATACTGTTGAGCAAAAGCTGCAGCTTCAATGGCAGCAGCAGCAAGGCTACTAGCTT
                      ____________________________________________________________
consensus             CATCATACTGTTGAGCAAAAGCTGCAGCTTCAATGGCAGCAGCAGCAAGGCTACTAGCTT
 
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JMFS063F03+           GAGAAGCTCCAGGTCCCCCAGATCCTGGACCAAGGATACTTTTTGCATATGCAACTCTAA
JMFS050G11+           GAGAAGCTCCAGGTCCCCCAGATCCTGGACCAAGGATACTTTTTGCATATGCAACTCTAA
JMFS058B12+           GAGAAGCTCCAGGTCCCCCAGATCCTGGACCAAGGATACTTTTTGCATATGCAACTCTAA
                      ____________________________________________________________
consensus             GAGAAGCTCCAGGTCCCCCAGATCCTGGACCAAGGATACTTTTTGCATATGCAACTCTAA
 
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JMFS063F03+           GGATCTGTCCATTCCTCTCTAAAGTTGTTCCATTAGTTGCTTCAAGAGCTTTCGTAGCGT
JMFS050G11+           GGATCTGTCCATTC--CTCTAAAGTTGTTCCATTAGTTGCTTCAAGAGCTTTCGTAGCGT
JMFS058B12+           GGATCTGTCCATTC--CTCTAAAGTTGTTCCATTAGTTGCTTCAAGAGCTTTCGTAGCGT
                      ____________________________________________________________
consensus             GGATCTGTCCATTC--CTCTAAAGTTGTTCCATTAGTTGCTTCAAGAGCTTTCGTAGCGT
 
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JMFS063F03+           CCTCAGCCGAATAGAAGTGCACAAATGCAAACCCCCTT                      
JMFS050G11+           CCTCAGCCGAATAGAAGTGCACAAATGCAAACCCCCTTGAAACATGGGTAAACTTGTCCC
JMFS058B12+           CCTCAGCCGAATAGAAGTGCACAAATGCAAACCCCCTTGAAACATGGGTAAACTTGTCCC
                      ____________________________________________________________
consensus             CCTCAGCCGAATAGAAGTGCACAAATGCAAACCCCCTTGAAACATGGGTAAACTTGTCCC
 
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JMFS050G11+           TGACAAGTCGAAGATCCTTGATAGGAGCATGTTTAGAAAATTCATAGCGAAGCATTTCTT
JMFS058B12+           TGACAAGTCGAAGATCCTTGATAGGAGCATGTTTAGAAAATTCATAGCGAAGCATTTCTT
                      ____________________________________________________________
consensus             TGACAAGTCGAAGATCCTTGATAGGAGCATGTTTAGAAAATTCATAGCGAAGCATTTCTT
 
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JMFS050G11+           CATCAGCATTTTCATCCAATCCACGGACAACCAAAACATGGGTAGGGCCTGCTTCTCCTC
JMFS058B12+           CATCAGCATTTTCATCCAATCCACGGACAACCAAAACATGGGTAGGGCCTGCTTCTCCTC
                      ____________________________________________________________
consensus             CATCAGCATTTTCATCCAATCCACGGACAACCAAAACATGGGTAGGGCCTGCTTCTCCTC
 
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JMFS050G11+           TCTNNGCAAGAGATGTAGGGTTNGATGGNGCCATANCAGNTGGAGGAGCATCATCTGTCC
JMFS058B12+           TCTTTGCAAGAGATGTAGGGTTTGATGTTGCCATATCAGCTGGAGGAGCATCATCTGTCC
                      ____________________________________________________________
consensus             TCTTTGCAAGAGATGTAGGGTTTGATGTTGCCATATCAGCTGGAGGAGCATCATCTGTCC
 
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JMFS050G11+           GGGGCTCATTACACTGAAAACAGGATGTT                               
JMFS058B12+           GTGGCTCATTACACTGAAAACAGGATGTTCGCCGTGCAAAATTTACACATCCACAAATTG
                      ____________________________________________________________
consensus             GTGGCTCATTACACTGAAAACAGGATGTTCGCCGTGCAAAATTTACACATCCACAAATTG