| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF033L24 | Sequence | 569 | 009039 (7) | ref|XP_006488403.1| | 2e-83 | PREDICTED: ras-related protein Rab11C-like isoform X1 [Citrus sinensis] ref|XP_ | 646 | 009039 (7) | ref|XP_006424930.1| | 5e-88 | hypothetical protein CICLE_v10029427mg [Citrus clementina] ref|XP_006424931.1| h |
| JMFN028O05 | Sequence | 642 | 009039 (7) | gb|AFK33953.1| | 3e-88 | unknown [Medicago truncatula] gb|KEH30192.1| RAB GTPase-like protein A1D [Medica | |||||
| JMFN033N05 | Sequence | 615 | 009039 (7) | ref|XP_006488403.1| | 4e-109 | PREDICTED: ras-related protein Rab11C-like isoform X1 [Citrus sinensis] ref|XP_ | |||||
| JMFS056E02 | Sequence | 642 | 009039 (7) | gb|KCW85497.1| | 1e-27 | hypothetical protein EUGRSUZ_B022982, partial [Eucalyptus grandis] | |||||
| JMSF041H20 | Sequence | 763 | 009039 (7) | ref|XP_006488403.1| | 1e-123 | PREDICTED: ras-related protein Rab11C-like isoform X1 [Citrus sinensis] ref|XP_ | 604 | 009039 (7) | ref|XP_009364340.1| | 1e-55 | PREDICTED: ras-related protein Rab11C [Pyrus x bretschneideri] |
This contig is upended
. : . : . : . : . : . :
rJMSF041H20- TATCAGAGTATATCTGTGATCAAAAACAGCAACACTGCCAGTATCAGTGGCTTCCC
____________________________________________________________
consensus TATCAGAGTATATCTGTGATCAAAAACAGCAACACTGCCAGTATCAGTGGCTTCCC
. : . : . : . : . : . :
rJMSF041H20- TTCACAAAAAATAAATAAGTGTACGATATGAGAGTAGATTCACCTAAACCACTAAACAAT
JMFN028O05+ TATGAGAGTAGATTCACCTAAACCACTAAACAAT
____________________________________________________________
consensus TTCACAAAAAATAAATAAGTGTACGATATGAGAGTAGATTCACCTAAACCACTAAACAAT
. : . : . : . : . : . :
rJMSF041H20- TAACATTCACAATCTTACTTTCTTGTACCAATAAGGTAAAGAAAGTATTCTACATGCCTC
JMFN028O05+ TAACATTCACAATCTTACTGTCTTGTACCAATAAGGTAAAGAAAGTATTCTACATGCCTC
____________________________________________________________
consensus TAACATTCACAATCTTACTTTCTTGTACCAATAAGGTAAAGAAAGTATTCTACATGCCTC
. : . : . : . : . : . :
rJMSF041H20- TCTTGCTCTGGATGAAGAAAGAGGGGAAAAACAATAAGTTTAAGCCAGCTACCGTTTGTG
JMFN028O05+ TCTTGCTCTGGATGAAGAAAGAGGGGAAAAACAATAAGTTTAAGCCAGCTACCGTTTGTG
____________________________________________________________
consensus TCTTGCTCTGGATGAAGAAAGAGGGGAAAAACAATAAGTTTAAGCCAGCTACCGTTTGTG
. : . : . : . : . : . :
rJMSF041H20- TTTGTTTCCCTCCTGAAATTCAGCTTAGGAAGAGCAACAGCCCCCTTTTGCATTTGCTGC
JMFN028O05+ TTTGTTTCCCTCCTGAAATTCAGCTTAGGAAGAGCAACAGCCCCCTTTTGCATTTGCTGC
____________________________________________________________
consensus TTTGTTTCCCTCCTGAAATTCAGCTTAGGAAGAGCAACAGCCCCCTTTTGCATTTGCTGC
. : . : . : . : . : . :
rJMSF041H20- GGAATCACCAACATTGATGGTGGTACCCTTACCAGGAAGGGTGTTTGCTGCTGCTTCCTG
JMFN028O05+ GGAATCACCAACATTGATGGTGGTACCCTTACCAGGAAGGGTGTTTGCTGCTGCTTCCTG
rJMFF033L24- TGCTGCTTCCTC
JMSF041H20+ TGCTGCTTCCTG
____________________________________________________________
consensus GGAATCACCAACATTGATGGTGGTACCCTTACCAGGAAGGGTGTTTGCTGCTGCTTCCTG
. : . : . : . : . : . :
rJMSF041H20- GGCAGCCAGTGCCTTCTTGCTTACAATATGGTAGATTTCTGACAAAATAGTCTGAAAAGC
JMFN028O05+ GGCAGCCAGTGCCTTCTTGCTTACAATATGGTAGATTTCTGACAAAATAGTCTGAAAAGC
rJMFF033L24- TGCAGCTAATGCCTTCTTGCTGATTATATGGTAGGTTTCAACCAAAATAGTCTGAAAAGC
JMSF041H20+ GGCAGCCAGTGCCTTCTTGCTTACAATATGGTAGATTTCTGACAAAATAGTCTGAAAAGC
____________________________________________________________
consensus GGCAGCCAGTGCCTTCTTGCTTACAATATGGTAGATTTCTGACAAAATAGTCTGAAAAGC
. : . : . : . : . : . :
rJMSF041H20- CTTTTCTACATTAAGCGCTTCCAATGCTGATGTCTCCAGAAATGACAATCCTTCCTTCTC
JMFN028O05+ CTTTTCTACATTAAGCGCTTCCAATGCTGATGTCTCCAGAAATGACAATCCTTCCTTCTC
rJMFF033L24- CTTCTCAACGTTAACTGCTTCCAGAGCGGATGTCTCTAGAAACGAGAGCCCTTCCGTTTC
JMFN033N05+ ACATTAAGCGCTTCCAATGCTGATGTCTCCAGAAATGACAATCCTTCCTTCTC
JMSF041H20+ CTTTTCTACATTAAGCGCTTCCAATGCTGATGTCTCCAGAAATGACAATCCTTCCTTCTC
____________________________________________________________
consensus CTTTTCTACATTAAGCGCTTCCAATGCTGATGTCTCCAGAAATGACAATCCTTCCTTCTC
. : . : . : . : . : . :
rJMSF041H20- AGCCAAAGTTTGACCATCCTGCTCGGAGACTGCTCTGAGGTGGTTGAGATCAGACTTGTT
JMFN028O05+ AGCCAAAGTTTGACCATCCTGCTCGGAGACTGCTCTGAGGTGGTTGAGATCAGACTTGTT
rJMFF033L24- AGCCAAAGTTTGACCATCCTGCTCCGAGACTGCTCTAAGGTGGTTGAGATCGGACTTGTT
JMFN033N05+ AGCCAAAGTTTGACCATCCTGCTCGGAGACTGCTCTGAGGTGGTTGAGATCAGACTTGTT
JMSF041H20+ AGCCAAAGTTTGACCATCCTGCTCGGAGACTGCTCTGAGGTGGTTGAGATCAGACTTGTT
____________________________________________________________
consensus AGCCAAAGTTTGACCATCCTGCTCGGAGACTGCTCTGAGGTGGTTGAGATCAGACTTGTT
. : . : . : . : . : . :
rJMSF041H20- CCCAGCCATCATAATGACAATGTTAGAGTCTGCATGGTCTCTCAGTTCTCGGAGCCACCT
JMFN028O05+ CCCAGCCATCATAATGACAATGTTAGAGTCTGCATGGTCTCTCAGTTCTCGGAGCCACCT
rJMFF033L24- GCCAGCCATCATGATGACAATGTTAGAATCTGCATGGTCTCTTAGTTCCCGTAGCCACCT
JMFN033N05+ CCCAGCCATCATAATGACAATGTTAGAGTCTGCATGGTCTCTCAGTTCTCGGAGCCACCT
JMSF041H20+ CCCAGCCATCATAATGACAATGTTAGAGTCTGCATGGTCTCTCAGTTCTCGGAGCCACCT
JMFF033L24+ CCAGCCATCATGATGACAATGTTAGAATCTGCATGGTCTCTTAGTTCCCGTAGCCACCT
____________________________________________________________
consensus CCCAGCCATCATAATGACAATGTTAGAGTCTGCATGGTCTCTCAGTTCTCGGAGCCACCT
. : . : . : . : . : . :
rJMSF041H20- TAAGACAT
JMFN028O05+ TAAGACATTGTCAAAGGTTTGCCTCTTTGTTATGTCATATACAAGCAGTGCTCCGACAGC
rJMFF033L24- TAGGACATTATCAAAGGTTTGCCTCTTTGTTATGTCATAGACAAGGAGAGCACCTACAGC
JMFN033N05+ TAAGACATTGTCAAAGGTTTGCCTCTTTGTTATGTCATATACAAGCAGTGCTCCGACAGC
JMSF041H20+ TAAGACATTGTCAAAGGTTTGCCTCTTTGTTATGTCATATACAAGCAGTGCTCCGACAGC
JMFF033L24+ TAGGACATTATCAAAGGTTTGCCTCTTTGTTATGTCATAGACAAGGAGAGCACCTACAGC
____________________________________________________________
consensus TAAGACATTGTCAAAGGTTTGCCTCTTTGTTATGTCATATACAAGGAGTGCTCCTACAGC
. : . : . : . : . : . :
JMFN028O05+ CCCTCTGTAGTAAGCACTAGTAATAGCTCGGTACCTTTCCTGGCCGGCAGTGTCCCAAAT
rJMFF033L24- TCCTCTGTAGTAAGCGCTGGTGATAGCTCGGTACCTTTCTTGCCCTGCAGTGTCCCAAAT
JMFN033N05+ CCCTCTGTAGTAAGCACTAGTAATAGCTCGGTACCTTTCCTGGCCGGCAGTGTCCCAAAT
JMSF041H20+ CCCTCTGTAGTAAGCACTAGTAATAGCTCGGTACCTTTCCTGGCCGGCAGTGTCCCAAAT
JMFF033L24+ TCCTCTGTAGTAAGCGCTGGTGATAGCTCGGTACCTTTCTTGCCCTGCAGTGTCCCAAAT
____________________________________________________________
consensus TCCTCTGTAGTAAGCGCTGGTGATAGCTCGGTACCTTTCTTGGCCTGCAGTGTCCCAAAT
. : . : . : . : . : . :
JMFN028O05+ CTG
rJMFF033L24- CTGAGCCTTGACTGTCTTTCCTTCCACCTGAA
JMFN033N05+ CTGGGCCTTGACAGTCTTTCCTTCCACCTGAAGAGTTCGGGTGGCGAACTCGACTCCGAT
JMSF041H20+ CTGGGCCTTGACAGTCTTTCCTTCCACCTGAAGAGTTCGGGTGGCGAACTCGACTCCGAT
JMFF033L24+ CTGAGCCTTGACTGTCTTTCCTTCCACCTGAAGAGTTCGGGTGGCGAATTCGACTCCGAT
JMFS056E02+ ACCTGAAGAGTTCGGGTGGCGAATTCGACTCCGAT
____________________________________________________________
consensus CTGAGCCTTGACTGTCTTTCCTTCCACCTGAAGAGTTCGGGTGGCGAATTCGACTCCGAT
. : . : . : . : . : . :
JMFN033N05+ AGTGGATTTGGACTCCAAGCAGAACTCATTTCGGGTAAACCTGGACAGAATGTTGGATTT
JMSF041H20+ AGTGGATTTGGACTCCAAGCAGAACTCATTTCGGGTAAACCTGGACAGAATGTTGGATTT
JMFF033L24+ AGTGGACTTAGACTCCAAGCAGAACTCATTTCGGGTAAACCTGGACAGAATATTGGATTT
JMFS056E02+ AGTGGACTTAGACTCCAAGCAGAACTCATTTCGGGTAAACCTGGACAGAATATTGGATTT
____________________________________________________________
consensus AGTGGATTTGGACTCCAAGCAGAACTCATTTCGGGTAAACCTGGACAGAATGTTGGATTT
. : . : . : . : . : . :
JMFN033N05+ CCCGACTCCAGAGTCTCCGATCAATACGATCTTAAACAGATAATCATATTCGTGGTCCAC
JMSF041H20+ CCCGACTCCAGAGTCTCCGATCAATACGATCTTAAACAGATAATCATATTCGTGGTCCAC
JMFF033L24+ CCCGACTCCAGAGTCTCCGATCAACACGATCTTAAACAGGTAATCGTATTCATGCTCCAC
JMFS056E02+ CCCGACTCCAGAGTCTCCGATCAACACGATCTTAAACAGGTAATCGTATTCATGCTCCAC
____________________________________________________________
consensus CCCGACTCCAGAGTCTCCGATCAATACGATCTTAAACAGGTAATCGTATTCGTGGTCCAC
. : . : . : . : . : . :
JMFN033N05+ TCTCTTCGCCATCCC
JMSF041H20+ TCTCTTCGCCATCCC
JMFF033L24+ TCTACTCGCCATCCCTCCGTAAAAGGAGAGAACAAAACCGGCGATACGGCGGATGAGAAC
JMFS056E02+ TCTACTCGCCATCCCTCCGTAAAAGGAGAGAACAAAACCGGCGATACGGCGGATGAGAAC
____________________________________________________________
consensus TCTCTTCGCCATCCCTCCGTAAAAGGAGAGAACAAAACCGGCGATACGGCGGATGAGAAC
. : . : . : . : . : . :
JMFF033L24+ GGAGATACAAACAACGGAAGAAACGGAGAAAAACGCAGCTTTTTGAAACGGCCAATGCGA
JMFS056E02+ GGAGATACAAACAACGGAAGAAACGGAGAAAAACGCAGCTTTTTGAAACGGCCAATGCGA
____________________________________________________________
consensus GGAGATACAAACAACGGAAGAAACGGAGAAAAACGCAGCTTTTTGAAACGGCCAATGCGA
. : . : . : . : . : . :
JMFF033L24+ GGAATTGTCTCTTCTGCTTGCTTAAAGGGACTGATTACATTACATTACATTACAATATTA
JMFS056E02+ GGAATTGTCTCTTCTGCTTGCTTAAAGGGACTGATTACATTACATTACATTACAATATTA
____________________________________________________________
consensus GGAATTGTCTCTTCTGCTTGCTTAAAGGGACTGATTACATTACATTACATTACAATATTA
. : . : . : . : . : . :
JMFF033L24+ CATACTCTTCCTCCCTGGCGGGTTTCT
JMFS056E02+ CATACTCTTCCTCCCTGGCGGGTTTCTATCTATAAATGTAATTTGCAATTTTCTTATGGA
____________________________________________________________
consensus CATACTCTTCCTCCCTGGCGGGTTTCTATCTATAAATGTAATTTGCAATTTTCTTATGGA