Contig 009038:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS049B11Sequence623009038 (6)ref|XP_009629755.1|6e-65PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Nicotia
JMFS056A03Sequence627009038 (6)ref|XP_009758840.1|2e-07PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Nicotia
JMFS099A03Sequence613009038 (6)gb|KJB14950.1|1e-55hypothetical protein B456_002G150300 [Gossypium raimondii] gb|KJB14951.1| hypoth
JMFS104G05Sequence597009038 (6)ref|XP_009629755.1|2e-61PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Nicotia
JMFS106E07Sequence637009038 (6)gb|AFB18634.1|1e-55CESA5 [Gossypium hirsutum]
JMSF030N03Sequence627009038 (6)ref|XP_009758840.1|1e-38PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Nicotia703019353gb|ACS88358.1|1e-106cellulose synthase catalytic subunit [Gossypium hirsutum]

Alignment

This contig is upended


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JMFS049B11+                      CATAGGTCAAAAGAGGGATTTCTAACNCAGGGCTAGATGCTTCGTTTCC
JMFS104G05+                                                      CTAGATGCTTCGTTTCC
                      ____________________________________________________________
consensus                        CATAGGTCAAAAGAGGGATTTCTAACNCAGGGCTAGATGCTTCGTTTCC
 
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JMFS049B11+           AGATGAACTAGCATGACCGCCATGGCAATGGGAAGAAGGAACTGTCCCAGCACCGCCCAA
JMFS104G05+           AGATGAACTAGCATGACCGCCATGGCAATGGGAAGAAGGAACTGTCCCAGCACCGCCCAA
                      ____________________________________________________________
consensus             AGATGAACTAGCATGACCGCCATGGCAATGGGAAGAAGGAACTGTCCCAGCACCGCCCAA
 
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JMFS049B11+           AGCTTCAACATCACAGTCAAACTCATGCTCTAAGTCATCAATGCCATCTTCTTCCTCATC
JMFS104G05+           AGCTTCAACATCACAGTCAAACTCATGCTCTAAGTCATCAATGCCATCTTCTTCCTCATC
                      ____________________________________________________________
consensus             AGCTTCAACATCACAGTCAAACTCATGCTCTAAGTCATCAATGCCATCTTCTTCCTCATC
 
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JMFS049B11+           CCCGTCAACCCGAGCACTACCTTTGAGACGCTTGTACCTAGTTTTGCACTGAGGGCAGGC
JMFS104G05+           CCCGTCAACCCGAGCACTACCTTTGAGACGCTTGTACCTAGTTTTGCACTGAGGGCAGGC
JMFS099A03+                                                CTAGTTTTACACTGGGGGCAGGC
JMFS106E07+                CAACACGAGGACTACCTTTAATGCGCTTATATCTAGTTTTACACTGGGGGCAGGC
                      ____________________________________________________________
consensus             CCCGTCAACCCGAGCACTACCTTTGAGACGCTTGTACCTAGTTTTGCACTGGGGGCAGGC
 
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JMFS049B11+           CTGGTTTCCCTCTCTTCTCTCATACTCGTAGCAAGGCCGGCATACAGGGAAAGCACATTC
JMFS104G05+           CTGGTTTCCCTCTCTTCTCTCATACTCGTAGCAAGGCCGGCATACAGGGAAAGCACATTC
JMFS099A03+           CTGACTTCCCTCTCTTCTTTCATACTCATAGCAAGGTCTGCAAACAGGGAAGGCACATTC
JMFS106E07+           CTGACTTCCCTCTCTTCTTTCATACTCATAGCAAGGTCTGCAAACAGGGAAGGCACATTC
JMSF030N03+                                 TACTCATAGCAAGGTCTGCAAACAGGGAAGGCACATTC
                      ____________________________________________________________
consensus             CTGGTTTCCCTCTCTTCTTTCATACTCATAGCAAGGTCTGCAAACAGGGAAGGCACATTC
 
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JMFS049B11+           GTTGCAAGCAACAAAGACTTCTCCCTCTGCTGTGATCTCTATCTCATCCCCGCAAATCTG
JMFS104G05+           GTTGCAAGCAACAAAGACTTCTCCCTCTGCTGTGATCTCTATCTCATCCCCGCAAATCTG
JMFS099A03+           ATTGCATGCGACAAAGAGCTCTCCATCTACAGTAATTTCAATTTCATCCCCGCAAATCTG
JMFS106E07+           ATTGCATGCGACAAAGAGCTCTCCATCTACAGTAATTTCAATTTCATCCCCGCAAATCTG
JMSF030N03+           ATTGCATGCGACAAAGAGCTCTCCATCTACAGTAATTTCAATTTCATCCCCGCAAATCTG
                      ____________________________________________________________
consensus             ATTGCATGCGACAAAGAGCTCTCCATCTACAGTAATTTCAATTTCATCCCCGCAAATCTG
 
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JMFS049B11+           GCATATTTGGCCACTTAATTCCCGCACTGATTTTATTTTACCGATTTCATCGGCATTGAT
JMFS104G05+           GCATATTTGGCCACTTAATTCCCGCACTGATTTTATTTTACCGATTTCATCGGCATTGAT
JMFS099A03+           GCATATTTGGCCACTTAATTCTCGCACCGACTTTATTCTTCCAATTTCATCGGCATTAAT
JMFS106E07+           GCATATTTGGCCACTTAATTCTCGCACCGACTTTATTCTTCCAATTTCATCGGCATTAAT
JMSF030N03+           ACATATTTGGCCACTTAATTCTCGCACCGACTTTATTCTTCCAATTTCATCGGCATTAAT
JMFS056A03+                                            TATTCTTCCAATTTCATCGGCATTAAT
                      ____________________________________________________________
consensus             GCATATTTGGCCACTTAATTCTCGCACCGACTTTATTCTTCCAATTTCATCGGCATTAAT
 
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JMFS049B11+           GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTTCCTCCAGTATTCAT   
JMFS104G05+           GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTTCCTCCAGTATTCAT   
JMFS099A03+           GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTCCCTGCTGTATTCATCTC
JMFS106E07+           GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTCCCTGCTGTATTCATCTC
JMSF030N03+           GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTCCCTGCTGTATTCATCTC
JMFS056A03+           GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTCCCTGCTGTATTCATCTC
                      ____________________________________________________________
consensus             GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTCCCTGCTGTATTCATCTC
 
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JMFS099A03+           TCCCACACCAAAGCTGGGAAACCAGTATATCCGACCGAAATCAGGCCTCAAAGGGGATTC
JMFS106E07+           TCCCACACCAAAGCTGGGAAACCAGTATATCCGACCGAAATCAGGCCTCAAAGGGGATTC
JMSF030N03+           TCCCACACCAAAGCTGGGAAACCAGTATATCCGACCGAAATCAGGCCTCAAAGGGGATTC
JMFS056A03+           TCCCACACCAAAGCTGGGAAACCAGTATATCCGACCGAAATCAGGCCTCAAAGGGGATTC
                      ____________________________________________________________
consensus             TCCCACACCAAAGCTGGGAAACCAGTATATCCGACCGAAATCAGGCCTCAAAGGGGATTC
 
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JMFS099A03+           AGCCGCCTTTCCGCGCCAAGAATCAATAAAACCCTCTAAAATGAGACGCCTTTAGCACTA
JMFS106E07+           AGCCGCCTTTCCGCGCCAAGAATCAATAAAACCCTCTAAAATGAGACGCCTTTAGCACTA
JMSF030N03+           AGCCGCCTTTCCGCGCCAAGAATCAATAAAACCCTCTAAAATGAGACGCCTTTAGCACTA
JMFS056A03+           AGCCGCCTTTCCGCGCCAAGAATCAATAAAACCCTCTAAAATGAGACGCCTTTAGCACTA
                      ____________________________________________________________
consensus             AGCCGCCTTTCCGCGCCAAGAATCAATAAAACCCTCTAAAATGAGACGCCTTTAGCACTA
 
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JMFS099A03+           AAAACTGAATCTTGGGGTTAAGCACACAGCGTAACCTCCCAACCCCCAACAACATTCGCA
JMFS106E07+           AAAACTGAATCTTGGGGTTAAGCACACAGCGTAACCTCCCAACCCCCAACAACATTCGCA
JMSF030N03+           AAAACTGAATCTTGGGGTTAAGCACACAGCGTAACCTCCCAACCCCCAACAACATTCGCA
JMFS056A03+           AAAACTGAATCTTGGGGTTAAGCACACAGCGTAACCTCCCAACCCCCAACAACATTCGCA
                      ____________________________________________________________
consensus             AAAACTGAATCTTGGGGTTAAGCACACAGCGTAACCTCCCAACCCCCAACAACATTCGCA
 
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JMFS099A03+           AAAAAAAACACACCAAGAAAAGAAATGAAGGAAAACCCAATACAACAAAATACCTAAATA
JMFS106E07+           AAAAAAAACACACCAAGAAAAGAAATGAAGGAAAACCCAATACAACAAAATACCTAAATA
JMSF030N03+           AAAAAAAACACACCAAGAAAAGAAATGAAGGAAAACCCAATACAACAAAATACCTAAATA
JMFS056A03+           AAAAAAAACACACCAAGAAAAGAAATGAAGGAAAACCCAATACAACAAAATACCTAAATA
                      ____________________________________________________________
consensus             AAAAAAAACACACCAAGAAAAGAAATGAAGGAAAACCCAATACAACAAAATACCTAAATA
 
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JMFS099A03+           TGAAGAAGAAGAAGAAGAAGAAGAAAGAAATTAATTGCCCCCAGACAGGCGCAGAGCGAT
JMFS106E07+           TGAAGAAGAAGAAGAAGAAGAAGAAAGAAATTAATTGCCCCCAGACAGGCGCAGAGCGAT
JMSF030N03+           TGAAGAAGAAGAAGAAGAAGAAGAAAGAAATTAATTGCCCCCAGACAGGCGCAGAGCGAT
JMFS056A03+           TGAAGAAGAAGAAGAAGAAGAAGAAAGAAATTAATTGCCCCCAGACAGGCGCAGAGCGAT
                      ____________________________________________________________
consensus             TGAAGAAGAAGAAGAAGAAGAAGAAAGAAATTAATTGCCCCCAGACAGGCGCAGAGCGAT
 
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JMFS099A03+           AATAGTAAAATTGAAGGAA                                         
JMFS106E07+           AATAGTAAAATTGAAGGAATTCCCAAAAG                               
JMSF030N03+           AATAGTAAAATTGAAGGAATTCCCAAAAGCAGAGAGTGGTGAGGTGAGAGATGCATAAAC
JMFS056A03+           AATAGTAAAATTGAAGGAATTCCCAAAAGCAGAGAGTGGTGAGGTGAGAGATGCATAAAC
                      ____________________________________________________________
consensus             AATAGTAAAATTGAAGGAATTCCCAAAAGCAGAGAGTGGTGAGGTGAGAGATGCATAAAC
 
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JMSF030N03+           AGTTTATACATTCATTCTTACAAGCTAAGAATGCACTGTAATCCAGC             
JMFS056A03+           AGTTTATACATTCATTCTTACAAGCTAAGAATGCACTGTAATCCAGCTGGAATAGGAGCC
                      ____________________________________________________________
consensus             AGTTTATACATTCATTCTTACAAGCTAAGAATGCACTGTAATCCAGCTGGAATAGGAGCC
 
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JMFS056A03+           CGACCAGCCAGGGTTCTAAAAATGGAGAGAGTGGGAAATCAATGTGAAATTGATAAAAAT
                      ____________________________________________________________
consensus             CGACCAGCCAGGGTTCTAAAAATGGAGAGAGTGGGAAATCAATGTGAAATTGATAAAAAT
 
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JMFS056A03+           GAAAATGAAAATATGGACGCGTACGAGAGAAGCACAAAGCAAGAAAAGGGATGAGGTGCC
                      ____________________________________________________________
consensus             GAAAATGAAAATATGGACGCGTACGAGAGAAGCACAAAGCAAGAAAAGGGATGAGGTGCC