Contig 009032:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS053A09Sequence504009032 (7)
JMFS093F11Sequence603009032 (7)ref|XP_006378562.1|3e-39hypothetical protein POPTR_0010s16340g [Populus trichocarpa] gb|ERP56359.1| hypo
JMSF003J23Sequence261009032 (7)787009931 (6)emb|CDP15192.1|1e-104unnamed protein product [Coffea canephora]
JMSF015B21Sequence478009032 (7)790009931 (6)emb|CDP15192.1|2e-112unnamed protein product [Coffea canephora]
JMSF015I04Sequence194009032 (7)757009931 (6)ref|XP_009765624.1|1e-106PREDICTED: pleiotropic drug resistance protein 3 [Nicotiana sylvestris]
JMSF021E18Sequence664009032 (7)ref|XP_010313828.1|1e-45PREDICTED: pleiotropic drug resistance protein 3 isoform X2 [Solanum lycopersic775009931 (6)ref|XP_006358552.1|2e-106PREDICTED: pleiotropic drug resistance protein 3-like [Solanum tuberosum]
JMSF038J15Sequence445009032 (7)896009931 (6)ref|XP_009765624.1|2e-112PREDICTED: pleiotropic drug resistance protein 3 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF021E18+ ATCTTAAGGATGTAATCTGTCTG
                      ____________________________________________________________
consensus ATCTTAAGGATGTAATCTGTCTG
 
. : . : . : . : . : . :
JMFS093F11+ TCTTTTGTCCTTCCACAGATATTGCCTTCATGTAAATATCTATGTCCTGATC
JMSF021E18+ AAGATTTGTCTTTTGTCCTTCCACAGATATTGCCTTCATGTAAATATCTATGTCCTGATC
                      ____________________________________________________________
consensus AAGATTTGTCTTTTGTCCTTCCACAGATATTGCCTTCATGTAAATATCTATGTCCTGATC
 
. : . : . : . : . : . :
JMFS093F11+ AGGAACAATTCCTAATTCCTTCTCCATCTTGATTAGCTCAACCAAAATATCAGCTCTGCT
JMSF021E18+ AGGAACAATTCCTAATTCCTTCTCCATCTTGATTAGCTCAACCAAAATATCAGCTCTGCT
                      ____________________________________________________________
consensus AGGAACAATTCCTAATTCCTTCTCCATCTTGATTAGCTCAACCAAAATATCAGCTCTGCT
 
. : . : . : . : . : . :
JMFS093F11+ ACCCACGCCCTGGCAGCAAGATGAGAAATCAAGGGTTTCTCTGACAGTCATTTCAGGGAT
JMSF021E18+ ACCCACGCCCTGGCAGCAAGATGAGAAATCAAGGGTTTCTCTGACAGTCATTTCAGGGAT
                      ____________________________________________________________
consensus ACCCACGCCCTGGCAGCAAGATGAGAAATCAAGGGTTTCTCTGACAGTCATTTCAGGGAT
 
. : . : . : . : . : . :
JMFS093F11+ ATGTAAGTCGTATTGACTAATGTATGCAGAAGTTTTCTGGGGGACAAATTCTTGAAATTT
JMSF021E18+ ATGTAAGTCGTATTGACTAATGTATGCAGAAGTTTTCTGGGGGACAAATTCTTGAAATTT
                      ____________________________________________________________
consensus ATGTAAGTCGTATTGACTAATGTATGCAGAAGTTTTCTGGGGGACAAATTCTTGAAATTT
 
. : . : . : . : . : . :
JMFS093F11+ GTGCCCATTGTAAGAAATTTCTCCCCTAACCTCAATTAAGCTGATAAGTCGATGAACATT
JMSF015B21+ ACCTCAATTAAGCTGATAAGTCGATGAACATT
JMSF038J15+ ACCTCAATTAAGCTGATAAGTCGATGAACATT
JMSF021E18+ GTGCCCATTGTAAGAAATTTCTCCCCTAACCTCAATTAAGCTGATAAGTCGATGAACATT
JMFS053A09+ ACCTCAATTAAGCTGATAAGTCGATGAACATT
                      ____________________________________________________________
consensus GTGCCCATTGTAAGAAATTTCTCCCCTAACCTCAATTAAGCTGATAAGTCGATGAACATT
 
. : . : . : . : . : . :
JMFS093F11+ AACCATTTAACCACAATTTTATCCAAACCCCACATCCCGGTAAACCCTGGTATGAGTCTG
JMSF015B21+ AACCATTTAACCACAATTTTATCCAAACCCCACATCCCGGTAAACCCTGGTATGAGTCTG
JMSF038J15+ AACCATTTAACCACAATTTTATCCAAACCCCACATCCCGGTAAACCCTGGTATGAGTCTG
JMSF021E18+ AACCATTTAACCACAATTTTATCCAAACCCCACATCCCGGTAAACCCTGGTATGAGTCTG
JMFS053A09+ ATCCATTTATCCACAATTTTATCCAAACCCCACATCCCGGTAAACCCTGGTATGAGTCTG
                      ____________________________________________________________
consensus AACCATTTAACCACAATTTTATCCAAACCCCACATCCCGGTAAACCCTGGTATGAGTCTG
 
. : . : . : . : . : . :
JMFS093F11+ CTCTATCTTGGAGTTTGATTCCTGCAACTGTTCTTCGTAGCATAGGGGCGAGTGGAAAGA
JMSF015B21+ CTCTATCTTGGAGTTTGATTCCTGCAACTGTTCTTCGTAGCATAGGGGCGAGTGGAAAGA
JMSF038J15+ CTCTATCTCGGAGTTTGATTCCTGCAACTGTTCTTCGTAGCATAGGGGCGAGTGGAAAGA
JMSF003J23+ CCTGCAACTGTTCTTCGTAGCATAGGGGCGAGTGGAAAGA
JMSF021E18+ CTCTATCTTGGAGTTTGATTCCTGCAACTGTTCTTCGTAGCATAGGGGCGAGTGGAAAGA
JMFS053A09+ CTCTATCTTGGAGTTTGATTCCTGCAACTGTTCTTCGTAGCATAGGGGTGAGTGGAAAGA
                      ____________________________________________________________
consensus CTCTATCTTGGAGTTTGATTCCTGCAACTGTTCTTCGTAGCATAGGGGCGAGTGGAAAGA
 
. : . : . : . : . : . :
JMFS093F11+ GTCGATCGGACTAGCTGTTGAGTCGTTGTCGGACATGGAGACATGGCTGTTCTGCTTCCG
JMSF015B21+ GTCGATCGGACTAGCTGTTGAGTCGTTGTCGGACATGGAGACATGGCTGTTCTGCTTCCG
JMSF038J15+ GTCGATCGGACTAGCTGTTGAGTCGTTGTCGGACATGGAGACATGGCTGTTCTGCTTCCG
JMSF003J23+ NTCGATCGGACTAGCTGTTGAGTCGTTGTCGGACANGGAGACATGGCTGTTCTGCTTCCG
JMSF015I04+ GTCGGACANGGAGACATGGCTGTTCTGCTTCCG
JMSF021E18+ GTCGATCGGACTAGCTGTTGAGTCGTTGTCGGACATGGAGACATGGCTGTTCTGCTTCCG
JMFS053A09+ GTCGATCGGACTAGCTGTTGAGTCGTTGTCGGACATGGAGACATGGCTGTTCTGCTTCCG
                      ____________________________________________________________
consensus GTCGATCGGACTAGCTGTTGAGTCGTTGTCGGACATGGAGACATGGCTGTTCTGCTTCCG
 
. : . : . : . : . : . :
JMFS093F11+ GTGATTCTTCTGGTAGTAATGGTGGCCGGAATGTGAATTGGAGTTGGAATTTGGAGCTGC
JMSF015B21+ GTGATTCTTCTGGTAGTAATGGTGGCCGGAATGTGAATTGGAGTTGGAATTTGGAGCTGC
JMSF038J15+ GTGATTCTTCTGGTAGTAATGGTGGCCGGAATGTGAATTGGAGTTGGAATTNGGAGCTGC
JMSF003J23+ GTGATTCTTCTGGTAGTAATGGTGGCCGGAATGTGAATNGGAGTTGGAATTNGGAGCTGC
JMSF015I04+ GTGATTCTTCTGGTAGTAATGGTGGCCGGAATGTGAATTGGAGTTGGAATTTGGAGCTGC
JMSF021E18+ GTGATTCTTCTGGTAGTAATGGTGGCCGGAATGTGAATTGGAGTTGGAATTTGGAGCTGC
JMFS053A09+ GTGATTCTTCTGGTAGTAATGGTGGCCGGAATGTGAATTGGAGTTGGAATTTGGAGCTGC
                      ____________________________________________________________
consensus GTGATTCTTCTGGTAGTAATGGTGGCCGGAATGTGAATTGGAGTTGGAATTTGGAGCTGC
 
. : . : . : . : . : . :
JMFS093F11+ TTTCTCCATTCCGAACGAGTTCGCCGGAAAAAAACTTCAAGTCAGTATCGGGAAAAAGAG
JMSF015B21+ TTTCTCCATTCCGAACGAGTTCGCCGGAAAAAAACTTCAAGTCAGTATCGGGAAAAAGAG
JMSF038J15+ TTTCTCCATTCCGAACGAGTTCGCCGGAAAAAAACTTCAAGTCAGTATCGGGAAAAAGAG
JMSF003J23+ TTTCTCCATTCCGAACGAGTTCGCCGGAAAAAAACTTCAAGTCAGTATCGGGAAAAAGAG
JMSF015I04+ TTTCTCCATTCCGAACGAGTTCGCCGGAAAAAAACTTCAAGTCAGTATCGGGAAAAAGAG
JMSF021E18+ TTTCTCCATTCCGAACGAGTTCGCCGGAAAAAAACTTCAAGTCAGTATCGGGAAAAAGAG
JMFS053A09+ TTTCTCCATTCCGAACGAGTTCGCCGGAAAAAAACTTCAAGTCAGTATCGGGAAAAAGAG
                      ____________________________________________________________
consensus TTTCTCCATTCCGAACGAGTTCGCCGGAAAAAAACTTCAAGTCAGTATCGGGAAAAAGAG
 
. : . : . : . : . : . :
JMFS093F11+ AACGAAAGAAA
JMSF015B21+ AACGAAAGAAAGGT-TTTTTGTTTGTGGAGAGAAACTTTGCC
JMSF038J15+ AACGAAAGAAAGGTCTTTTTGTTTGTGGAGAGAAACT
JMSF003J23+ AACGAAAGAAAGGT-TTCTTGTTTGTGGAGAGAAACTTTGCC
JMSF015I04+ AACGAAAGAAAGGT-TTTTTGTTTGTGGAGAGAAACTNTGCC
JMSF021E18+ AACGAAAGAAAGGT-TTTTTGTTTGTGGAGAGAAACTTTGCC
JMFS053A09+ AACGAAAGAAAGGT-TTTTTGTTTGTGGAGAGAAACATTGCGGAAAGGAAATGCCGATCG
                      ____________________________________________________________
consensus AACGAAAGAAAGGT-TTTTTGTTTGTGGAGAGAAACTTTGCCGAAAGGAAATGCCGATCG