Contig 009021:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS011C08Sequence544009021 (4)ref|XP_006348295.1|1e-06PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Solanum tuberosum]
JMFS014A10Sequence612009021 (4)ref|XP_009604807.1|1e-14PREDICTED: TPR repeat-containing thioredoxin TTL1 [Nicotiana tomentosiformis]
JMFS044D02Sequence623009021 (4)ref|XP_004244266.1|2e-06PREDICTED: TPR repeat-containing thioredoxin TTL1 [Solanum lycopersicum]
JMFS046H01Sequence626009021 (4)ref|XP_006348295.1|1e-06PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFS014A10+                                 TCAAAGCCGGAGAGCTGNCGGTGGTCCCTCCAGAGTAG
                      ____________________________________________________________
consensus                                   TCAAAGCCGGAGAGCTGNCGGTGGTCCCTCCAGAGTAG
 
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JMFS014A10+           ATTAGCGGACTGGAACCGCCGGAATCCGACTTCGCATATCCGGGCTTAGACCCACGCCCG
                      ____________________________________________________________
consensus             ATTAGCGGACTGGAACCGCCGGAATCCGACTTCGCATATCCGGGCTTAGACCCACGCCCG
 
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JMFS014A10+           GGTGAACTGTCTACCGAACCTGATAGCTCACTGGAGTGGTTCAAATCGGACCGCTTCTGA
JMFS046H01+                                   AGCTCACTGGAGTGGTTCAAATCGGACCGCTTCTGA
JMFS044D02+                                                GGTTCAAATCGGACCGCTTCTGA
                      ____________________________________________________________
consensus             GGTGAACTGTCTACCGAACCTGATAGCTCACTGGAGTGGTTCAAATCGGACCGCTTCTGA
 
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JMFS014A10+           ACCGGGTTAAGCCCATTTCTACCCGATACCGATCCAGACGAGCTAGAGCTACTACTGGTG
JMFS046H01+           ACCGGGTTAAGCCCATTTCTACCCGATACCGATCCAGACGAGCTAGAGCTACTACTGGTG
JMFS011C08+            CCGGGTTAAGCCCATTTCTACCCGATACCGATCCAGACGAGCTAGAGCTACTACTGGTG
JMFS044D02+           ACCGGGTTAAGCCCATTTCTACCCGATACCGATCCAGACGAGCTAGAGCTACTACTGGTG
                      ____________________________________________________________
consensus             ACCGGGTTAAGCCCATTTCTACCCGATACCGATCCAGACGAGCTAGAGCTACTACTGGTG
 
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JMFS014A10+           GTGGCGGTTGAAGAACTAGTCCCTCTCCGGCGGAAAAGCAACGGCGACACCGGCGAGCCC
JMFS046H01+           GTGGCGGTTGAAGAACTAGTCCCTCTCCGGCGGAAAAGCAACGGCGACACCGGCGAGCCC
JMFS011C08+           GTGGCGGTTGAAGAACTAGTCCCTCTCCGGCGGAAAAGCAACGGCGACACCGGCGAGCCC
JMFS044D02+           GTGGCGGTTGAAGAACTAGTCCCTCTCCGGCGGAAAAGCAACGGCGACACCGGCGAGCCC
                      ____________________________________________________________
consensus             GTGGCGGTTGAAGAACTAGTCCCTCTCCGGCGGAAAAGCAACGGCGACACCGGCGAGCCC
 
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JMFS014A10+           AGATCGAGTTCCCTGAAATCCGGCTTGTCAATTTCCGGTTCATTGCATCTCAGCGAGTTC
JMFS046H01+           AGATCGAGTTCCCTGAAATCCGGCTTGTCAATTTCCGGTTCATTGCATCTCAGCGAGTTC
JMFS011C08+           AGATCGAGTTCCCTGAAATCCGGCTTGTCAATTTCCGGTTCATTGCATCTCAGCGAGTTC
JMFS044D02+           AGATCGAGTTCCCTGAAATCCGGCTTGTCAATTTCCGGTTCATTGCATCTCAGCGAGTTC
                      ____________________________________________________________
consensus             AGATCGAGTTCCCTGAAATCCGGCTTGTCAATTTCCGGTTCATTGCATCTCAGCGAGTTC
 
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JMFS014A10+           TTGAACCGATCACCCAACCCATCAGCCCCAGAAATGGATCCCTTCCTAGAATGCGACATC
JMFS046H01+           TTGAACCGATCACCCAACCCATCAGCCCCAGAAATGGATCCCTTCCTAGAATGCGACATC
JMFS011C08+           TTGAACCGATCACCCAACCCATCAGCCCCAGAAATGGATCCCTTCCTAGAATGCGACATC
JMFS044D02+           TTGAACCGATCACCCAACCCATCAGCCCCAGAAATGGATCCCTTCCTAGAATGCGACATC
                      ____________________________________________________________
consensus             TTGAACCGATCACCCAACCCATCAGCCCCAGAAATGGATCCCTTCCTAGAATGCGACATC
 
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JMFS014A10+           TTCAAATCCCTTATTTCTTTTTTTCTCTCTCTCACTCTCTCACTATATACACACACCCAA
JMFS046H01+           TTCAAATCCCTTATTTCTTTTTTTCTCTCTCTCACTCTCTCACTATATACACACACCCAA
JMFS011C08+           TTCAAATCCCTTATTTCTTTTTTTCTCTCTCTCACTCTCTCACTATATACACACACCCAA
JMFS044D02+           TTCAAATCCCTTATTTCTTTTTTTCTCTCTCTCACTCTCTCACTATATACACACACCCAA
                      ____________________________________________________________
consensus             TTCAAATCCCTTATTTCTTTTTTTCTCTCTCTCACTCTCTCACTATATACACACACCCAA
 
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JMFS014A10+           TGTGTGTGTATATATGGATAGAAATTTCACTGTGTATATCTTCACTTCTCTCTTATCACC
JMFS046H01+           TGTGTGTGTATATATGGATAGAAATTTCACTGTGTATATCTTCACTTCTCTCTTATCACC
JMFS011C08+           TGTGTGTGTATATATGGATAGAAATTTCACTGTGTATATCTTCACTTCTCTCTTATCACC
JMFS044D02+           TGTGTGTGTATATATGGATAGAAATTTCACTGTGTATATCTTCACTTCTCTCTTATCACC
                      ____________________________________________________________
consensus             TGTGTGTGTATATATGGATAGAAATTTCACTGTGTATATCTTCACTTCTCTCTTATCACC
 
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JMFS014A10+           GGGAACCAGCGGCAATGTGTGAAGAAGCTCTGAAAAAGACATACACAGAGAGATATAGAA
JMFS046H01+           GGGAACCAGCGGCAATGTGTGAAGAAGCTCTGAAAAAGACATACACAGAGAGATATAGAA
JMFS011C08+           GGGAACCAGCGGCAATGTGTGAAGAAGCTCTGAAAAAGACATACACAGAGAGATATAGAA
JMFS044D02+           GGGAACCAGCGGCAATGTGTGAAGAAGCTCTGAAAAAGACATACACAGAGAGATATAGAA
                      ____________________________________________________________
consensus             GGGAACCAGCGGCAATGTGTGAAGAAGCTCTGAAAAAGACATACACAGAGAGATATAGAA
 
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JMFS014A10+           AGGGAGAGTGTCAGAGAGAAAGAGAAGAAGAGAA                          
JMFS046H01+           AGGGAGAGTGTCAGAGAGAAAGAGAAGAAGAGAAAGGGATCTCGTGATATAAAAGGGCGA
JMFS011C08+           AGGGAGAGTGTCAGAGAGAAAGAGAAGAAGAGAAAGGGATCTCGTGATATAAAAGGGCGA
JMFS044D02+           AGGGAGAGTGTCAGAGAGAAAGAGAAGAAGAGAAAGGGATCTCGTGATATAAAAGGGCGA
                      ____________________________________________________________
consensus             AGGGAGAGTGTCAGAGAGAAAGAGAAGAAGAGAAAGGGATCTCGTGATATAAAAGGGCGA
 
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JMFS046H01+           AGCAAAGAATGAATGTGAGGGTTGAGAAGAAGAGAGGTGGATAGATGGTGGTGGTGGTGG
JMFS011C08+           AGCAAAGAATGAATGTGAGGGTTGAGAAGAAGAGAGGTGGATAGATGGTGGTGGTGGTGG
JMFS044D02+           AGCAAAGAATGAATGTGAGGGTTGAGAAGAAGAGAGGTGGATAGATGGTGGTGGTGGTGG
                      ____________________________________________________________
consensus             AGCAAAGAATGAATGTGAGGGTTGAGAAGAAGAGAGGTGGATAGATGGTGGTGGTGGTGG
 
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JMFS046H01+           TGGCAAGACCTGAGAAAGTAGAGGAGAGAGAAACAAAGAAAGAAAGAGAT          
JMFS011C08+           TGGC                                                        
JMFS044D02+           TGGCAAGACCTGAGAAAGAAGAGGAGAGAGAAACAAAGAAAGAAAGAGATCCTGTTTTAA
                      ____________________________________________________________
consensus             TGGCAAGACCTGAGAAAGTAGAGGAGAGAGAAACAAAGAAAGAAAGAGATCCTGTTTTAA