Contig 009018:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS146A03+                                                              AAGGCATGA
                      ____________________________________________________________
consensus                                                                AAGGCATGA
 
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JMFS146A03+           AACTGCAGCATTTCCAGTATCAGAATATGTTCACAAAATTTTTCAAAAAAGATAAGTGCA
JMFS132H06+                          AGTATCAGAATATGTTCACAAAATTTTTCAAAAAAGATAAGTGCA
                      ____________________________________________________________
consensus             AACTGCAGCATTTCCAGTATCAGAATATGTTCACAAAATTTTTCAAAAAAGATAAGTGCA
 
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JMFS146A03+           CTACATACTGTGCACTTGATTCCCCTAACACTATAAGAACCACAGGGGCACCACATATAT
JMFS132H06+           CTACATACTGTGCACTTGATTCCCCTAACACTATAAGAACCACAGGGGCTCCACATATAT
                      ____________________________________________________________
consensus             CTACATACTGTGCACTTGATTCCCCTAACACTATAAGAACCACAGGGGCTCCACATATAT
 
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JMFS146A03+           ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAA
JMFS132H06+           ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAA
                      ____________________________________________________________
consensus             ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAA
 
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JMFS146A03+           ACGTTGAAATATCTCAGGTTGGTTTTCATATTTGTAACTTATTCATCACTTTCTTCTGAA
JMFS132H06+           ACGTTGAAATATCTCAGGTTGGTTTTCATATTTGTAACTTATTCATCACTTTCTTCTGAA
JMFS100E02-                                       TATTTGTAACTTATTCATCACTTTCTTCTGAA
                      ____________________________________________________________
consensus             ACGTTGAAATATCTCAGGTTGGTTTTCATATTTGTAACTTATTCATCACTTTCTTCTGAA
 
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JMFS146A03+           TTATCAAACTGTATCATGCCTCCAACATAGATACCAAATTCAACTGTACAGGCATTGCAA
JMFS132H06+           TTATCAAACTGTATCATGCCTCCAACATAGATACCAAATTCAACTGTACAGGCATTGCAA
JMFS100E02-           TTATCAAACTGTATCATGCCTCCAACATAGATACCAAATTCAACTGTACAGGCATTGCAA
                      ____________________________________________________________
consensus             TTATCAAACTGTATCATGCCTCCAACATAGATACCAAATTCAACTGTACAGGCATTGCAA
 
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JMFS146A03+           AGAAGGCATCAAATGAGAGCAAGTATTAAGGTGTGTCTTTGAGAACGAGCAACAAAGTTT
JMFS132H06+           AGAAGGCATCAAATGAGAGCAAGTATTAAGGTGTGTCTTTGAGAACGAGCAACAAAGTTT
JMFS100E02-           AGAAGGCATCAAATGAGAGCAAGTATTAAGGTGTGTCTTTGAGAACGAGCAACAAAGTTT
                      ____________________________________________________________
consensus             AGAAGGCATCAAATGAGAGCAAGTATTAAGGTGTGTCTTTGAGAACGAGCAACAAAGTTT
 
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JMFS146A03+           TGAATCTTACTTGAGTAACATCTCCAGAACCAGAAGACTATAACTAATAACTTCGTCTTG
JMFS132H06+           TGAATCTTACTTGAGTAACATCTCCAGAACCAGAAGACTATAACTAATAACTTCGTCTTG
JMFS100E02-           TGAATCTTACTTGAGTAACATCTCCAGAACCAGAAGACTATAACTAATAACTTCGTCTTG
JMFS166D06+                     TTGAGTAACATCTCCAGAACCAGAAGACTATAACTAATAACTTCGTCTTG
                      ____________________________________________________________
consensus             TGAATCTTACTTGAGTAACATCTCCAGAACCAGAAGACTATAACTAATAACTTCGTCTTG
 
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JMFS146A03+           TTCATAACATCCGAGCTCTGGTCCGGACAGAATATCCCGCGGATTCTATCCTTTGAGAAC
JMFS132H06+           TTCATAACATCCGAGCTCTGGTCCGGACAGAATATCCCGCGGATTCTATCCTTTGAGAAC
JMFS100E02-           TTCATAACATCCGAGCTCTGGTCCGGACAGAATATCCCGCGGATTCTATCCTTTGAGAAC
JMFS166D06+           TTCATAACATCCGAGCTCTGGTCCGGACAGAATATCCCGCGGATTCTATCCTTTGAGAAC
                      ____________________________________________________________
consensus             TTCATAACATCCGAGCTCTGGTCCGGACAGAATATCCCGCGGATTCTATCCTTTGAGAAC
 
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JMFS146A03+           A                                                           
JMFS132H06+           A                                                           
JMFS100E02-           ACCTAGCTTCTCCAATGAAGCACGGAGTTCTGAGCTGCTGCATTCTTCAGTTGTCTGGAT
JMFS166D06+           ACCTAGCTTCTCCAATGAAGCACGGAGTTCTGAGCTGCTGCATTCTTCAGTTGTCTGGAT
                      ____________________________________________________________
consensus             ACCTAGCTTCTCCAATGAAGCACGGAGTTCTGAGCTGCTGCATTCTTCAGTTGTCTGGAT
 
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JMFS100E02-           AACGTTGGGGCTGTTGTAAGGGACGACGTCTGTAAGTGGATAATTCCTATTCGAAAGAAG
JMFS166D06+           AACGTTGGGGCTGTTGTAAGGGACGACGTCTGTAAGTGGATAATTCCTATTCGAAAGAAG
                      ____________________________________________________________
consensus             AACGTTGGGGCTGTTGTAAGGGACGACGTCTGTAAGTGGATAATTCCTATTCGAAAGAAG
 
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JMFS100E02-           TTGACTGCTAGAAACACTGCACACTCCTTTCAGTATTACAGCTTTCCTTAGACCTCCAAG
JMFS166D06+           TTGACTGCTAGAAACACTGCACACTCCTTTCAGTATTACAGCTTTCCTTAGACCTCCAAG
JMFS040A10+                                                          TTAGACCTCCAAG
                      ____________________________________________________________
consensus             TTGACTGCTAGAAACACTGCACACTCCTTTCAGTATTACAGCTTTCCTTAGACCTCCAAG
 
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JMFS100E02-           CAATCCTTCATAGTCGGTGTCCCCGCTTTCGCCTACAAAGACCACCAACTTTGACAAGTC
JMFS166D06+           CAATCCTTCATAGTCGGTGTCCCCGCTTTCGCCTACAAAGACCACCAACTTTGACAAGTC
JMFS040A10+           CAATCNTTCATAGTCGGTGTCNCCGCTTTCGCCTACAAAGACCACCAACTTTGACAAGTC
                      ____________________________________________________________
consensus             CAATCCTTCATAGTCGGTGTCCCCGCTTTCGCCTACAAAGACCACCAACTTTGACAAGTC
 
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JMFS100E02-           CATACCCCACCGCAGATACAAGTACCTGAGTGCTTGGGAACGAGAGGACAACACTGGAAT
JMFS166D06+           CATACCCCACCGCAGATACAAGTACCTGAGTGCTTGGGAACGAGAGGACAACACTGGAAT
JMFS040A10+           CATACCCCACCGCAGATACAAGTACCTGAGTGCTTGGGAACGAGAGGACAACACTGGAAT
                      ____________________________________________________________
consensus             CATACCCCACCGCAGATACAAGTACCTGAGTGCTTGGGAACGAGAGGACAACACTGGAAT
 
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JMFS100E02-           TACATTGATCCTGCTGC                                           
JMFS166D06+           TACATTGATCCTGCTGCCATTTTGACAATAAACGACATGACAACGGAGAGCCTGGATTCT
JMFS040A10+           TACATTGATCCTGCTGCCATTTTGACAATAAACGACATGACAACGGAGAGCCTGGATTCT
                      ____________________________________________________________
consensus             TACATTGATCCTGCTGCCATTTTGACAATAAACGACATGACAACGGAGAGCCTGGATTCT
 
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JMFS166D06+           CATCAACTTCCTAAGCTCCTTAACAGAGGGGTC                           
JMFS040A10+           CATCAACTTCCTAAGCTCCTTAACAGAGGGGTCTCCAGACTTGTGAACTTTAAAAGTATA
                      ____________________________________________________________
consensus             CATCAACTTCCTAAGCTCCTTAACAGAGGGGTCTCCAGACTTGTGAACTTTAAAAGTATA
 
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JMFS040A10+           GCAGTAGTCAGCTGAATTCTTTTCATCTTCAACAATGTGCTCTTCTTTTTCACCCTTCTT
                      ____________________________________________________________
consensus             GCAGTAGTCAGCTGAATTCTTTTCATCTTCAACAATGTGCTCTTCTTTTTCACCCTTCTT
 
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JMFS040A10+           ATCAGAAATAGAAGCTGCCCAACGCACTAAAGTCTTTCTCAACCCTTCTCCACCCCAGCG
                      ____________________________________________________________
consensus             ATCAGAAATAGAAGCTGCCCAACGCACTAAAGTCTTTCTCAACCCTTCTCCACCCCAGCG
 
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JMFS040A10+           GTATTCAATGTGGGAATGGTAGTACAAGTCAACTACAAAAGGATTATCTTCAGAATGGAA
                      ____________________________________________________________
consensus             GTATTCAATGTGGGAATGGTAGTACAAGTCAACTACAAAAGGATTATCTTCAGAATGGAA
 
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JMFS040A10+           AGATGAATAATAAAGATCACCACCACTATTGCAAATGAAAGCATCAAAATCAGTAGGATT
                      ____________________________________________________________
consensus             AGATGAATAATAAAGATCACCACCACTATTGCAAATGAAAGCATCAAAATCAGTAGGATT
 
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JMFS040A10+           CATGCCCTCTGAAATCAGAAAAGAATGCACTTCTGATATATTGAATGCAGTGGCCAATAT
                      ____________________________________________________________
consensus             CATGCCCTCTGAAATCAGAAAAGAATGCACTTCTGATATATTGAATGCAGTGGCCAATAT
 
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JMFS040A10+           GAACCCTACGGAGCCTTCCATCCTTTCCGCCTCCACAGCTGCAAAGATCTTTCTCACATT
                      ____________________________________________________________
consensus             GAACCCTACGGAGCCTTCCATCCTTTCCGCCTCCACAGCTGCAAAGATCTTTCTCACATT