Contig 009017:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS038F08Sequence653009017 (2)ref|XP_004238044.1|1e-65PREDICTED: receptor-like protein kinase HSL1 [Solanum lycopersicum]
JMFS136F04Sequence608009017 (2)ref|XP_004238044.1|1e-56PREDICTED: receptor-like protein kinase HSL1 [Solanum lycopersicum]

Alignment

This contig is upended


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JMFS136F04+                                      AGCCAAAGTTTGNCAAGCAAGAGGAGGCAAAGA
                      ____________________________________________________________
consensus                                        AGCCAAAGTTTGNCAAGCAAGAGGAGGCAAAGA
 
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JMFS136F04+           TTTCTCCACTACAGTCATTGCCGGAACTTATGGCTACTTGGCACCAGGTAAACACTTTTC
                      ____________________________________________________________
consensus             TTTCTCCACTACAGTCATTGCCGGAACTTATGGCTACTTGGCACCAGGTAAACACTTTTC
 
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JMFS136F04+           TACAATCAGCTAATGTAGTTACATTCTCTAATTAACTGAATCAGCTATCAACTAACAGCC
                      ____________________________________________________________
consensus             TACAATCAGCTAATGTAGTTACATTCTCTAATTAACTGAATCAGCTATCAACTAACAGCC
 
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JMFS136F04+           ATTTACCAGACAGAACCCTTTATCTAAATTTTTGATTTCTTGTATTAGAATATGCATATT
JMFS038F08-                                                         AGAATATGCATATT
                      ____________________________________________________________
consensus             ATTTACCAGACAGAACCCTTTATCTAAATTTTTGATTTCTTGTATTAGAATATGCATATT
 
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JMFS136F04+           CTGCAAAGGCGACCACCAAGTGCGACGTGTACAGTTACGGGGTGGTGTTAATGGAGCTAA
JMFS038F08-           CTGCAAAGGCGACCACCAAGTGCGACGTGTACAGTTACGGGGTGGTGTTAATGGAGCTAA
                      ____________________________________________________________
consensus             CTGCAAAGGCGACCACCAAGTGCGACGTGTACAGTTACGGGGTGGTGTTAATGGAGCTAA
 
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JMFS136F04+           TAACCGGGAAGAAGCCGGTGGAGGCGGAATTCGGGGAGAGCAAGAACATTGTGTATTGGG
JMFS038F08-           TAACCGGGAAGAAGCCGGTGGAGGCGGAATTCGGGGAGAGCAAGAACATTGTGTATTGGG
                      ____________________________________________________________
consensus             TAACCGGGAAGAAGCCGGTGGAGGCGGAATTCGGGGAGAGCAAGAACATTGTGTATTGGG
 
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JMFS136F04+           TTTCATCCAAGGTGGAAACAAAGGAAGGAGCGTACGAGGTGTTGGACAAACGAGTGTCGG
JMFS038F08-           TTTCATCCAAGGTGGAAACAAAGGAAGGAGCGTACGAGGTGTTGGACAAACGAGTGTCGG
                      ____________________________________________________________
consensus             TTTCATCCAAGGTGGAAACAAAGGAAGGAGCGTACGAGGTGTTGGACAAACGAGTGTCGG
 
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JMFS136F04+           ATGGGTTCAAGGAGTATATGATGAAGGCCCTCCGTATCGCCATCCGTTGCACGTACAAGA
JMFS038F08-           ATGGGTTCAAGGAGTATATGATGAAGGCCCTCCGTATCGCCATCCGTTGCACGTACAAGA
                      ____________________________________________________________
consensus             ATGGGTTCAAGGAGTATATGATGAAGGCCCTCCGTATCGCCATCCGTTGCACGTACAAGA
 
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JMFS136F04+           CGCCGACCCTGCGCCCGACCATGAACGAGGTTGTCCAACACCTGATAGAGGCGCAGCCGC
JMFS038F08-           CGCCGACCCTGCGCCCGACCATGAACGAGGTTGTCCAACACCTGATAGAGGCGCAGCCGC
                      ____________________________________________________________
consensus             CGCCGACCCTGCGCCCGACCATGAACGAGGTTGTCCAACACCTGATAGAGGCGCAGCCGC
 
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JMFS136F04+           CGTCCCAATTCGATTATTGCTGCAAGTTGTCGCACAAGACAAAGAGCATCGACCCATGAT
JMFS038F08-           CGTCCCAATTCGATTATTGCTGCAAGTTGTCGCACAAGACAAAGAGCATCGACCCATGAT
                      ____________________________________________________________
consensus             CGTCCCAATTCGATTATTGCTGCAAGTTGTCGCACAAGACAAAGAGCATCGACCCATGAT
 
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JMFS136F04+           GTTGTGGGGGTACGTACGGTGCAACGTGAACAGTA                         
JMFS038F08-           GTTGTGGGGGTACGTACGGTGCAACGTGAACAGTACGTACAGATTTTGGCCTGCAATATT
                      ____________________________________________________________
consensus             GTTGTGGGGGTACGTACGGTGCAACGTGAACAGTACGTACAGATTTTGGCCTGCAATATT
 
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JMFS038F08-           TGACGAGATGTAACAGCATATATAATATACATAGAATATATAACATAGCAGTAACGTTAT
                      ____________________________________________________________
consensus             TGACGAGATGTAACAGCATATATAATATACATAGAATATATAACATAGCAGTAACGTTAT
 
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JMFS038F08-           TATTATTATAACCCCCTTTGGCTTTTGCAAGACAAGTGTTGGTAGGAGCTTACAGATGCT
                      ____________________________________________________________
consensus             TATTATTATAACCCCCTTTGGCTTTTGCAAGACAAGTGTTGGTAGGAGCTTACAGATGCT
 
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JMFS038F08-           GTTTCCCGCTTTTCAATTCCTTTTCTGGGTCTGTGGAGACTNNTATTATCATCATCATCA
                      ____________________________________________________________
consensus             GTTTCCCGCTTTTCAATTCCTTTTCTGGGTCTGTGGAGACTNNTATTATCATCATCATCA