| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027D14 | Sequence | 301 | 008999 (14) | 680 | 011079 (4) | emb|CDP16075.1| | 3e-67 | unnamed protein product [Coffea canephora] | |||
| JMFS009G09 | Sequence | 610 | 008999 (14) | gb|ABN10955.2| | 9e-103 | auxin response factor 8 [Ipomoea nil] | |||||
| JMFS018G04 | Sequence | 584 | 008999 (14) | gb|ABN10955.2| | 2e-09 | auxin response factor 8 [Ipomoea nil] | |||||
| JMFS021A10 | Sequence | 604 | 008999 (14) | gb|ABN10955.2| | 6e-14 | auxin response factor 8 [Ipomoea nil] | |||||
| JMFS038E04 | Sequence | 643 | 008999 (14) | gb|ABN10955.2| | 2e-110 | auxin response factor 8 [Ipomoea nil] | |||||
| JMFS042D07 | Sequence | 202 | 008999 (14) | gb|ABN10955.2| | 4e-06 | auxin response factor 8 [Ipomoea nil] | |||||
| JMFS078F07 | Sequence | 604 | 008999 (14) | gb|ABN10955.2| | 1e-129 | auxin response factor 8 [Ipomoea nil] | |||||
| JMFS135G08 | Sequence | 659 | 008999 (14) | gb|ABN10955.2| | 3e-19 | auxin response factor 8 [Ipomoea nil] | |||||
| JMFS137C06 | Sequence | 614 | 008999 (14) | gb|ABN10955.2| | 2e-135 | auxin response factor 8 [Ipomoea nil] | |||||
| JMFS148C08 | Sequence | 400 | 008999 (14) | ||||||||
| JMFS157H09 | Sequence | 639 | 008999 (14) | gb|ABN10955.2| | 4e-124 | auxin response factor 8 [Ipomoea nil] | |||||
| JMSF007E02 | Sequence | 284 | 008999 (14) | 780 | 011079 (4) | emb|CDP16075.1| | 2e-100 | unnamed protein product [Coffea canephora] | |||
| JMSF023M18 | Sequence | 298 | 008999 (14) | 609 | 011079 (4) | emb|CDP16075.1| | 1e-62 | unnamed protein product [Coffea canephora] | |||
| JMSF023O24 | Sequence | 626 | 008999 (14) | gb|ABN10955.2| | 8e-09 | auxin response factor 8 [Ipomoea nil] | 740 | 011079 (4) | ref|XP_009602214.1| | 8e-92 | PREDICTED: auxin response factor 6-like isoform X2 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMFS137C06+ GTC
____________________________________________________________
consensus GTC
. : . : . : . : . : . :
JMFS137C06+ AGGAGATGCCTCTTTGGTTGTCCCCGGANAACATGCCTGAACTTCCATTCATTCCCGTGA
JMFS078F07+ CGGAAAACATGCCTGAACTTCCATTCATTCCCGTGA
JMFS157H09+ CCTGAACTTCCATTCATTCCCGTGA
____________________________________________________________
consensus AGGAGATGCCTCTTTGGTTGTCCCCGGAAAACATGCCTGAACTTCCATTCATTCCCGTGA
. : . : . : . : . : . :
JMFS137C06+ AGATCTTTAGCAATCAATTCTTGTGCAGGAGGCTGCTGGGAATAATCCAGAGGAGGGAAG
JMFS078F07+ AGATCTTTAGCAATCAATTCTTGTGCAGGAGGCTGCTGGGAATAATCCAGAGGAGGGAAG
JMFS157H09+ AGATCTTTAGCAATCAATTCTTGTGCAGGAGGCTGCTGGGAATAATCCAGAGGAGGGAAG
JMFS009G09+ AGGGAAG
JMFS038E04+ CAGGAGGCTGCTGGGAATAATCCAGAGGAGGGAAG
____________________________________________________________
consensus AGATCTTTAGCAATCAATTCTTGTGCAGGAGGCTGCTGGGAATAATCCAGAGGAGGGAAG
. : . : . : . : . : . :
JMFS137C06+ ACTTTTTCAGCTGCTCGCCGAGGCACAGAGAATCCTCCATGAGTACTAGTGTCACTAGCA
JMFS078F07+ ACTTTTTCAGCTGCTCGCCGAGGCACAGAGAATCCTCCATGAGTACTAGTGTCACTAGCA
JMFS157H09+ ACTTTTTCAGCTGCTCGCCGAGGCACAGAGAATCCTCCATGAGTACTAGTGTCACTAGCA
JMFS009G09+ ACTTTTTCAGCTGCTCGCCGAGGCACAGAGAATCCTCCATGAGTACTAGTGTCACTAGCA
JMFS038E04+ ACTTTTNCAGCTGCTCGCCGAGGCACAGAGAATCCTCCATGAGTACTAGTGTCACTAGCA
____________________________________________________________
consensus ACTTTTTCAGCTGCTCGCCGAGGCACAGAGAATCCTCCATGAGTACTAGTGTCACTAGCA
. : . : . : . : . : . :
JMFS137C06+ GTCAAGGTTTTGCAGAAATAATTTGTTGGCTGTTTACTTGGCATCCCTAGTTCAGCAGGT
JMFS078F07+ GTCAAGGTTTTGCAGAAATAATTTGTTGGCTGTTTACTTGGCATCCCTAGTTCAGCAGGT
JMFS157H09+ GTCAAGGTTTTGCAGAAATAATTTGTTGGCTGTTTACTTGGCATCCCTAGTTCAGCAGGT
JMFS009G09+ GTCAAGGTTTGNCAGAAATAATTTGTTGGCTGTTTACTTGGCATCCCTAGTTCAGCAGGT
JMFS038E04+ GTCAAGGTTTTGCAGAAATAATTTGTTGGCTGTTTACTTGGCATCCCTAGTTCAGCAGGT
____________________________________________________________
consensus GTCAAGGTTTTGCAGAAATAATTTGTTGGCTGTTTACTTGGCATCCCTAGTTCAGCAGGT
. : . : . : . : . : . :
JMFS137C06+ AGCAGACAGACATCCTTTTGCTCTTGTGCACTTAGCGGCTGCAATGTCATCTGTGCATAT
JMFS078F07+ AGCAGACAGACATCCTTTTGCTCTTGTGCACTTAGCGGCTGCAATGTCATCTGTGCATAT
JMFS157H09+ AGCAGACAGACATCCTTTTGCTCTTGTGCACTTAGCGGCTGCAATGTCATCTGTGCATAT
JMFS009G09+ AGCAGACAGACATCCTTTTGCTCTTGTGCACTTAGCGGCTGCAATGTCATCTGTGCATAT
JMFS038E04+ AGCAGACAGACATCCTTTTGCTCTTGTGCACTTAGCGGCTGCAATGTCATCTGTGCATAT
____________________________________________________________
consensus AGCAGACAGACATCCTTTTGCTCTTGTGCACTTAGCGGCTGCAATGTCATCTGTGCATAT
. : . : . : . : . : . :
JMFS137C06+ ACTTCATCAGTCTCGTTATCTGCATGCATAGTAACATTGTGAAGCTGACAGATGAGTTGC
JMFS078F07+ ACTTCATCAGTCTCGTTATCTGCATGCATAGTAACATTGTGAAGCTGACAGATGAGTTGC
JMFS157H09+ ACTTCATCAGTCTCGTTATCTGCATGCATAGTAACATTGTGAAGCTGACAGATGAGTTGC
JMFS009G09+ ACTTCATCAGTCTCGTTATCTGCATGCATAGTAACATTGTGAAGCTGACAGATGAGTTGC
JMFS038E04+ ACTTCATCAGTCTCGTTATCTGCATGCATAGTAACATTGTGAAGCTGACAGATGAGTTGC
____________________________________________________________
consensus ACTTCATCAGTCTCGTTATCTGCATGCATAGTAACATTGTGAAGCTGACAGATGAGTTGC
. : . : . : . : . : . :
JMFS137C06+ GCTGGTAAACCAGGATAACTAGGTATGTGAGCATCTATTTCCTTGTTTGTTGAAGCAGTA
JMFS078F07+ GCTGGTAAACCAGGATAACTAGGTATGTGAGCATCTATTTCCTTGTTTGTTGAAGCAGTA
JMFS157H09+ GTTGGTAGGCCAGGAGAAGTAGGTATGTGAGCATCTATTTCCTTGTTTGTTGAAGCAGTA
JMFS009G09+ GCTGGTAAACCAGGATAACTAGGTATGTGAGCATCTATTTCCTTGTTTGTTGAAGCAGTA
JMFS038E04+ GCTGGTAAACCAGGATAACTAGGTATGTGAGCATCTATTTCCTTGTTTGTTGAAGCAGTA
JMFS135G08+ GAGCATCTATTCCTATGTNTGTTGAAGCAGTA
____________________________________________________________
consensus GCTGGTAAACCAGGATAACTAGGTATGTGAGCATCTATTTCCTTGTTTGTTGAAGCAGTA
. : . : . : . : . : . :
JMFS137C06+ ACCTGCTCGCTATGCCCTTGGGGGAAGTAGACGACGCGGCTTCCCAGCGGAGGAAGGGAA
JMFS078F07+ ACCTGCTCGCTATGCCCTTGGGGGAAGTAGACGACGCGGCTTCCCAGCGGAGGAAGGGAA
JMFS157H09+ ACCTGCTCGCTATGCCCTTGGGGGAAGTAGACGACGCGGCTTCCCAGCGGAGGAAGGGAA
JMFS009G09+ ACCTGCTCGCTATGCCCTTGGGGGAAGTAGACGACGCGGCTTCCCAGCGGAGGAAGGGAA
JMFS038E04+ ACCTGCTCGCTATGCCCTTGGGGGAAGTAGACGACGCGGCTTCCCAGCGGAGGAAGGGAA
JMSF023O24+ CCAGN-GGAGGAAGGGAA
JMFS135G08+ ACCTGCTCGCTATGCCCTT-GGGGAAGTAGACGACGCGGCTTCCCAG-CGAGGAAGGGAA
JMFS021A10+ GGGAA
____________________________________________________________
consensus ACCTGCTCGCTATGCCCTTGGGGGAAGTAGACGACGCGGCTTCCCAGCGGAGGAAGGGAA
. : . : . : . : . : . :
JMFS137C06+ ACAAGCGGGCCAGCACAGGCATGCCACAGCTCCGAATTCAAGCATTTCTTCTCACCTGTA
JMFS078F07+ ACAAGCGGGCCAGCACAGGCATGCCACAGCTCCGAATTCAAGCATTTCTTCTCACCTGTA
JMFS157H09+ ACAAGCGGGCCAGCACAGGCATGCCACAGCTCCGAATTCAAGCATTTCTTCTCACCTGTA
JMFS042D07+ CGAATTCAAGCATTTCTTCTCACCTGTA
JMFS009G09+ ACAAGCGGGCCAGCACAGGCATGCCACAGCTCCGAATTCAAGCATTTCTTCTCACCTGTA
JMFS038E04+ ACAAGCGGGCCAGCACAGGCATGCCACAGCTCCAAATTCAAGCATTTCTTCTCACCTGTA
JMSF023O24+ NCAAGNGGGNCAGCNCAGGCATGNCNCAGNTNNGAATTCAAGCATTTNTTNTCACNTGTA
JMFS135G08+ ACAAGCGGGCCAGCACAGGCATGCCACAGCTCCGAATTCAAGCATTTCTTCTCACCTGTA
JMFS021A10+ ACAAGCGGGCCAGCACAGGCATGCCACAGCTCCGAATTCAAGCATTTCTTCTCACCTGTA
JMFS018G04+ AGGCATGCCACAGCTCNGAATTCAAGCATTTCTTCTCACCTGTA
____________________________________________________________
consensus ACAAGCGGGCCAGCACAGGCATGCCACAGCTCCGAATTCAAGCATTTCTTCTCACCTGTA
. : . : . : . : . : . :
JMFS137C06+ CCTTCCTCTGCTTGAGGATTAACCCCGGCCAAAGAAACCCTCATCCCGGGAAATGATTGA
JMFS078F07+ CCTTCCTCTGCTTGAGGATTAACCCCGGCCAAAGAAACCCTCATCCCGGGAAATGATTGA
JMFS157H09+ CCTTCCTCTGCTTGAGGATTAACCCCGGCCAAAGAAACCCTCATCCCGGGAAATGATTGA
JMFS042D07+ CCTTCCTCTGCTTGAGGATTAACCCCGGCCAAAGAAACCCTCATCCCGGGAAATGATTGA
JMFS009G09+ CCTTCCTCTGCTTGAGGATTAACCCCGGCCAAAGAAACCCTCATCCCGGGAAATGATTGA
JMFS038E04+ CCTTCCTCTGCTTGAGGATTAACCCCGGCCAAAGAAACCCTCATCCCGGGAAATGATTGA
JMSF023O24+ CNTTCNTNTGNTTGAGGATTAACNCCGGCCAAAGAAACCNTCATCCCGGGAAATGATTGA
JMFS135G08+ CCTTCCTCTGCTTGAGGATTAACCCCGGCCAAAGAAACCCTCATCCCGGGAAATGATTGA
JMFS021A10+ CCTTCCTCTGCTTGAGGATTAACNCCGGCCAAAGAAACCCTCATCCCGGGAAATGATTGA
JMFS018G04+ CCTTCCTCTGCTTGAGGATTAACCCCGGCCAAAGAAACCCTCATCCCGGGAAATGATTGA
____________________________________________________________
consensus CCTTCCTCTGCTTGAGGATTAACCCCGGCCAAAGAAACCCTCATCCCGGGAAATGATTGA
. : . : . : . : . : . :
JMFS137C06+ GCCGCTAAAGA
JMFS078F07+ GCCGCTAAAGAGCTGCTCCTTGTACCGA
JMFS157H09+ GCCGCTAAAGAGCTGCTCCTTGTACCGACTACAAATCCCACAAACTTGTT-AAGCAAAAA
JMFS042D07+ GCCGCTAAAGAGCTGCTCCTTGTACCGACTACAAATCCCACAAACTTGTTGAAGCAAAAA
JMFS009G09+ GCCGCTAAAGAGCTGCTCCTTGTACCGACTACAAATCCCACAAACTTGTTGAAGCAAAAA
JMFS038E04+ GCCGCTAAAGAGCTGCTCCTTGTACCGACTACAAATCCCACAAACTTGTTGAAGCAAAAA
JMSF023O24+ GCCGNTAAAGAGNTGNTCCTTGTACNGANTACAAATCCCACAAACTTGTTGAAGCAAAAA
JMFS135G08+ GCCGCTAAAGAGCTGCTCCTTGTACCGACTACAAATCCCACAAACTTGTTGAAGCAAAAA
JMFS021A10+ GCCGCTAAAGAGCTGCTCCTTGTACCGACTACAAATCCCACAAACTTGTTGAAGCAAAAA
JMFS018G04+ GCCGCTAAAGAGCTGCTCCTTGTACCGACTACAAATCCCACAAACTTGTTGAAGCAAAAA
____________________________________________________________
consensus GCCGCTAAAGAGCTGCTCCTTGTACCGACTACAAATCCCACAAACTTGTTGAAGCAAAAA
. : . : . : . : . : . :
JMFS157H09+ GCAAAAACCCAAAAG
JMFS042D07+ GCAAAAACCCAAAAGAAAATAAACGTAAAAGGAAGAAGAAAAGTGATGAAGCGA
JMFS009G09+ GCAAAAACCCAAAAGAAAATAAACGTAAAAGGAAGAAGAAAAGTGATGAAGCGACTGGTT
JMFS038E04+ GCAAAAACCCAAAAGAAAATAAACGTAAAAGGAAGAAGAAAAGTGAT-AAGCGACTGGTT
JMSF023O24+ GCAAAAACCCAAAAGAAAATAAACGTAAAAGGAAGAAGAAAAGTGATGAAGCGACTGGTT
JMFS135G08+ GCAAAAACCCAAAAGAAAATAAACGTAAAAGGAAGAAGAAAAGTGATGAAGCGACTGGTT
JMFS021A10+ GCAAAAACCCAAAAGAAAATAAACGTAAAAGGAAGAAGAAAAGTGATGAAGCGACTGGTT
JMFS018G04+ GCAAAAACCCAAAAGAAAATAAACGTAAAAGGAAGAAGAAAAGTGATGAAGCGACTGGTT
____________________________________________________________
consensus GCAAAAACCCAAAAGAAAATAAACGTAAAAGGAAGAAGAAAAGTGATGAAGCGACTGGTT
. : . : . : . : . : . :
JMFS009G09+ GTA
JMFS038E04+ GTACCCTCA
JMSF023O24+ GTACCCTCACCCACAAACCCACCCCCCACCCAAACAGCAAAAAAGCATATTCTCATCCGA
JMFS135G08+ GTACCCTCACCCACAAACCCACCCCCCACCCAAACAGCAAAAAAGCATATTCTCATCCGA
JMFS021A10+ GTACCCTCACCCACAAACCCACCCCCCACCCAAACAGCAAAAAAGCATATTCTCATCCGA
JMSF007E02+ TCACCCACAAACCCACCCCCCACCCAAACAGCAAAAAAGCATATTCTCATCCGA
JMFS148C08+ TCACCCACAAACCCACCCCCCACCCAAACAGCAAAAAAGCATATTCTCATCCGA
JMSF023M18+ CCTCACCCACAAACCCACCCCCCACCCAAACAGCAAAAAAGCATATTCTCATCCGA
JMFF027D14+ CCCTCACCCACAAACCCACCCCCCACCCAAACAGCAAAAAAGCATATTCTCATCCGA
JMFS018G04+ GTACCCTCACCCACAAACCCACCCCCCACCCAAACAGCAAAAAAGCATATTCTCATCCGA
____________________________________________________________
consensus GTACCCTCACCCACAAACCCACCCCCCACCCAAACAGCAAAAAAGCATATTCTCATCCGA
. : . : . : . : . : . :
JMSF023O24+ ACCCACTCCCGCAACCAAACACCACCGCCCTCCTCCTCGTCTGCTTCATTCTTTAAGCTC
JMFS135G08+ ACCTACTCCCGCAACCAAACACCACCGCCCTCCTCCTCGTCTGCTTCATTCTTTAAGCTC
JMFS021A10+ ACCCACTCCCGCAACCAAACACCACCGCCCTCCTCCTCGTCTGCTTCATTCTTTAAGCTC
JMSF007E02+ ACCCACTCCCGCAACCAAACACCACCGCCCTCCTCCTCGTCTGCTTCATTCTTTAAGCTC
JMFS148C08+ ACCCACTCCCGCAACCAAACACCACCGCCCTCCTCCTCGTCTGCTTCATTCTTTAAGCTC
JMSF023M18+ ACCCACTCCCGCAACCAAACACCACCGCCCTCCTCCTCGTCTGCTTCATTCTTTAAGCTC
JMFF027D14+ ACCCACTCCCGCAACCAAACACCACCGCCCTCCTCCTCGTCTGCTTCATTCTTTAAGCTC
JMFS018G04+ ACCCACTCCCGCAACCAAACACCACCGCCCTCCTCCTCGTCTGCTTCATTCTTTAAGCTC
____________________________________________________________
consensus ACCCACTCCCGCAACCAAACACCACCGCCCTCCTCCTCGTCTGCTTCATTCTTTAAGCTC
. : . : . : . : . : . :
JMSF023O24+ CAGATCCTCTCTGCAACTACCTCAGCTCTATTCAACCCCCTGGAATTCCCCTTTCGCCTG
JMFS135G08+ CAGATCCTCTCTGCAACTACCTCAGCTCTATTCAACCCCCTGGAATTCCCCTTTCGCCTG
JMFS021A10+ CAGATCCTCTCTGCAACTACCTCAGCTCTATTCAACCCCCTGGAATTCCCCTTTCGCCTG
JMSF007E02+ CAGATCCTCTCTGCAACTACCTCAGCTCTATTCAACCCCCTGGAATTCCCCTTTCGCCTG
JMFS148C08+ CAGATCCTCTCTGCAACTACCTCAGCTCTATTCAACCCCCTGGAATTCCCCTTTCGCCTG
JMSF023M18+ CAGATCCTCTCTGCAACTACCTCAGCTCTATTCAACCCCCTGGAATTCCCCTTTCGCCTG
JMFF027D14+ CAGATCCTCTCTGCAACTACCTCAGCTCTATTCAACCCCCTGGAATTCCCCTTTCGCCTG
JMFS018G04+ CAGATCCTCTCTGCAACTACCTCAGCTCTATTCAACCCCCTGGAATTCCCCTTTCGCCTG
____________________________________________________________
consensus CAGATCCTCTCTGCAACTACCTCAGCTCTATTCAACCCCCTGGAATTCCCCTTTCGCCTG
. : . : . : . : . : . :
JMSF023O24+ TAGAAGACAAGGAAGCAACACAGGAGCAGATCTCGAAGGTAGGTTGGTATCCAGTCTAGC
JMFS135G08+ TAGAAGACAAGGAAGCAACACAGGAGCAGATCTCGAAGGTAGGTTGGTATCCAGTCTAGC
JMFS021A10+ TAGAAGACAAGGAAGCAACACAGGAGCAGATCTCGAAGGTAGGTTGGTATCCAGTCTAGC
JMSF007E02+ TAGAAGACAAGGAAGCAACACAGGAGCAGATCTCGAAGGTAGGTTGGTATCCAGTCTAGC
JMFS148C08+ TAGAAGACAAGGAAGCAACACAGGAGCAGATCTCGAAGGTAGGTTGGTATCCAGTCTAGC
JMSF023M18+ TAGAAGACAAGGAAGCAACACAGGAGCAGATCTCGAAGGTAGGTTGGTATCCAGTCTAGC
JMFF027D14+ TAGAAGACAAGGAAGCAACACAGGAGCAGATCTCGAAGGTAGGTTGGTATCCAGTCTAGC
JMFS018G04+ TAGAAGACAAGGAAGCAACACAGGAGCAGATCTCGAAGGTAGGTTGGTATCCAGTCTAGC
____________________________________________________________
consensus TAGAAGACAAGGAAGCAACACAGGAGCAGATCTCGAAGGTAGGTTGGTATCCAGTCTAGC
. : . : . : . : . : . :
JMSF023O24+ AAGAAGAGAGGGAAGATGATTGGAAACCCTAAGAAAGAAGAGTAATAA
JMFS135G08+ AAGAAGAGAGGGAAGATGATTGGAAACCCTAAGAAAGAAGAGTAATAATAAGTAAATAGT
JMFS021A10+ AAGAAGAGAGGGAAGATGATTGGAAACCCTAAGAAAGAAGAGTAATAATAAGTAAATAGT
JMSF007E02+ AAGAAGAGAGGGAAGATGATTGGAAACCCTAAGAAAGAAGAGTAATAAT
JMFS148C08+ AAGAAGAGAGGGAAGATGATTGGAAACCCTAAGAAAGAAGAGTAATAATAAGTAAATAGT
JMSF023M18+ AAGAAGAGAGGGAAGATGATTGGAAACCCTAAGAAAGAAGAGTAATAAT
JMFF027D14+ AAGAAGAGAGGGAAGATGATTGGAAACCCTAAGAAAGAAGAGTAATAATAAGTAAATAGT
JMFS018G04+ AAGAAGAGAGGGAAGATGATTGGAAACCCTAAGAAAGAAGAGTAATAATAAGTAAATAGT
____________________________________________________________
consensus AAGAAGAGAGGGAAGATGATTGGAAACCCTAAGAAAGAAGAGTAATAATAAGTAAATAGT
. : . : . : . : . : . :
JMFS135G08+ TCCCAAGCAGAGAGCTG
JMFS021A10+ TCCCAAGCAGAGAGCTGAAATGGGCTCTGCTCATAATACAACAGATCTCTTTGGAAGTT
JMFS148C08+ TCCCAAGCAGAGAGCTGAAATGGGCTCTGCTCATAATACAACA
JMFS018G04+ TCCCAAGCAGAGAGCTGAAATGGGCTCTGCTCATAATACAACAGATCTCTTTGGAAGTTA
____________________________________________________________
consensus TCCCAAGCAGAGAGCTGAAATGGGCTCTGCTCATAATACAACAGATCTCTTTGGAAGTTA