Contig 008997:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS064F05+                                                                   AGCA
                      ____________________________________________________________
consensus                                                                     AGCA
 
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JMFS064F05+           GCCGAGTTCTTGGTTTTTCTTCGGCCAGCACCAACAGGCAAGTTCCTCGTCATCCCACCC
JMFS054F06+                                CGGCCAGCACCAACAGGCAAGTTCCTCGTCATCCCACCC
JMFS017F04+                                            ACAGGCAAGTTCCTCGTCATCCCACCC
                      ____________________________________________________________
consensus             GCCGAGTTCTTGGTTTTTCTTCGGCCAGCACCAACAGGCAAGTTCCTCGTCATCCCACCC
 
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JMFS064F05+           GACGTCCAATATCTCTGGCATTTCTTGCAGAAATGGCGAGGCTGGTTCGTGTTGTAGTTG
JMFS054F06+           GACGTCCAATATCTCTGGCATTTCTTGCAGAAATGGCGAGGCTGGTTCGTGTTGTAGTTG
JMFS017F04+           GACGTCCAATATCTCTGGCATTTCTTGCAGAAATGGCGAGGCTGGTTCGTGTTGTAGTTG
                      ____________________________________________________________
consensus             GACGTCCAATATCTCTGGCATTTCTTGCAGAAATGGCGAGGCTGGTTCGTGTTGTAGTTG
 
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JMFS064F05+           TTGAAATAACAGAACTTGGTGTCCATACTGTCACATCTAGGACATGGAAGTATCTTGTCT
JMFS054F06+           TTGAAATAACAGAACTTGGTGTCCATACTGTCACATCTAGGACATGGAAGTATCTTGTCT
JMFS017F04+           TTGAAATAACAGAACTTGGTGTCCATACTGTCACATCTAGGACATGGAAGTATCTTGTCT
                      ____________________________________________________________
consensus             TTGAAATAACAGAACTTGGTGTCCATACTGTCACATCTAGGACATGGAAGTATCTTGTCT
 
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JMFS064F05+           GGTTTTTTCAGAGTCTTATCTTTCCCATTACTCATTTTCCCCTCTTCTTCATCAGTTGTT
JMFS054F06+           GGTTTTTTCAGAGTCTTATCTTTCCCATTACTCATTTTCCCCTCTTCTTCATCAGTTGTT
JMFS017F04+           GGTTTTTTCAGAGTCTTATCTTTCCCATTACTCATTTTCCCCTCTTCTTCATCAGTTGTT
                      ____________________________________________________________
consensus             GGTTTTTTCAGAGTCTTATCTTTCCCATTACTCATTTTCCCCTCTTCTTCATCAGTTGTT
 
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JMFS064F05+           GAAATTTCAGTTGATCCACAATCTTCATCAACATGTGGTGCTTTTAAGCCATCCCTAATT
JMFS054F06+           GAAATTTCAGTTGATCCACAATCTTCATCAACATGTGGTGCTTTTAAGCCATCCCTAATT
JMFS017F04+           GAAATTTCAGTTGATCCACAATCTTCATCAACATGTGGTGCTTTTAAGCCATCCCTAATT
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consensus             GAAATTTCAGTTGATCCACAATCTTCATCAACATGTGGTGCTTTTAAGCCATCCCTAATT
 
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JMFS064F05+           TCATCTACAGTCTGATCCATTATCCCTTCCCCTTCCATTAACACTGTTCCTTCATCCTCT
JMFS054F06+           TCATCTACAGTCTGATCCATTATCCCTTCCCCTTCCATTAACACTGTTCCTTCATCCTCT
JMFS017F04+           TCATCTACAGTCTGATCCATTATCCCTTCCCCTTCCATTAACACTGTTCCTTCATCCTCT
                      ____________________________________________________________
consensus             TCATCTACAGTCTGATCCATTATCCCTTCCCCTTCCATTAACACTGTTCCTTCATCCTCT
 
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JMFS064F05+           TTACTTTCATCCATCCTCTCTCCATTTTCATTCTTTTGCTGTTGTTCATCCTCTCCGGGC
JMFS054F06+           TTACTTTCATCCATCCTCTCTCCATTTTCATTCTTTTGCTGTTGTTCATCCTCTCCGGGC
JMFS017F04+           TTACTTTCATCCATCCTCTCTCCATTTTCATTCTTTTGCTGTTGTTCATCCTCTCCGGGC
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consensus             TTACTTTCATCCATCCTCTCTCCATTTTCATTCTTTTGCTGTTGTTCATCCTCTCCGGGC
 
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JMFS064F05+           TCAGCTTCTGAACAAGAACTATCTTTAGCCAAGGAATTGGCTTCTGAAGCTGCTCCGCCG
JMFS054F06+           TCAGCTTCTGAACAAGAACTATCTTTAGCCAAGGAATTGGCTTCTGAAGCTGCTCCGCCG
JMFS017F04+           TCAGCTTCTGAACAAGAACTATCTTTAGCCAAGGAATTGGCTTCTGAAGCTGCTCCGCCG
                      ____________________________________________________________
consensus             TCAGCTTCTGAACAAGAACTATCTTTAGCCAAGGAATTGGCTTCTGAAGCTGCTCCGCCG
 
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JMFS064F05+           GGGTCGACATCCATCTCCGTCGGCGGCGGCGGCGGCGGAGCATCCGGGAACTGGATAGTC
JMFS054F06+           GGGTCGACATCCATCTCCGTCGGCGGCGGCGGCGGCGGAGCATCCGGGAACTGGATAGTC
JMFS017F04+           GGGTCGACATCCATCTCCGTCGGCGGCGGCGGCGGCGGAGCATCCGGGAACTGGATAGTC
                      ____________________________________________________________
consensus             GGGTCGACATCCATCTCCGTCGGCGGCGGCGGCGGCGGAGCATCCGGGAACTGGATAGTC
 
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JMFS064F05+           ATCCCGAACAGCTTTATCGTCGGGTCCTTGGTCGGTTCCGGCATTACAGTTGCTGAAAAC
JMFS054F06+           ATCCCGAACAGCTTTATCGTCGGGTCCTTGGTCGGTTCCGGCATTACAGTTGCTGAAAAC
JMFS017F04+           ATCCCGAACAGCTTTATCGTCGGGTCCTTGGTCGGTTCCGGCATTACAGTTGCTGAAAAC
                      ____________________________________________________________
consensus             ATCCCGAACAGCTTTATCGTCGGGTCCTTGGTCGGTTCCGGCATTACAGTTGCTGAAAAC
 
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JMFS064F05+           TGAGAAATCAGAATCACAGCAAAAGGGCG                               
JMFS054F06+           TGAGAAATCAGAATCACAGCAAAAGGGCGAAAAAGCAAAGAGTATAATAA          
JMFS017F04+           TGAGAAATCAGAATCACAGCAAAAGGGCGAAAAAGCAAAGAGTATAATAATCCGATGATT
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consensus             TGAGAAATCAGAATCACAGCAAAAGGGCGAAAAAGCAAAGAGTATAATAATCCGATGATT