| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006A06 | Sequence | 591 | 012481 (35) | gb|ABF94275.1| | 5e-120 | Elongation factor 1-alpha, putative, expressed [Oryza sativa Japonica Group] | 766 | 008993 (14) | gb|AAR83865.1| | 9e-100 | elongation factor 1-alpha [Capsicum annuum] |
| JMFF006C24 | Sequence | 575 | 012481 (35) | gb|EMT09703.1| | 8e-87 | Elongation factor 1-alpha [Aegilops tauschii] | 750 | 008993 (14) | gb|AAR83865.1| | 5e-95 | elongation factor 1-alpha [Capsicum annuum] |
| JMFF016H10 | Sequence | 591 | 012481 (35) | gb|ABF94275.1| | 2e-119 | Elongation factor 1-alpha, putative, expressed [Oryza sativa Japonica Group] | 734 | 008993 (14) | gb|AAR83865.1| | 4e-93 | elongation factor 1-alpha [Capsicum annuum] |
| JMFF026C08 | Sequence | 597 | 012481 (35) | gb|ABF94275.1| | 8e-126 | Elongation factor 1-alpha, putative, expressed [Oryza sativa Japonica Group] | 740 | 008993 (14) | gb|AAF79822.1|AC026875_2 | 2e-65 | T6D22.2 [Arabidopsis thaliana] |
| JMFF027P11 | Sequence | 508 | 012481 (35) | gb|EAY88762.1| | 7e-98 | hypothetical protein OsI_10238 [Oryza sativa Indica Group] | 698 | 008993 (14) | gb|AAT72900.1| | 6e-67 | elongation factor 1A SMV resistance-related protein [Glycine max] |
| JMFF030F17 | Sequence | 567 | 012481 (35) | gb|AFW87115.1| | 8e-114 | putative translation elongation factor Tu family protein isoform 1 [Zea mays] g | 705 | 008993 (14) | gb|AAR83865.1| | 4e-100 | elongation factor 1-alpha [Capsicum annuum] |
| JMFF034J16 | Sequence | 587 | 008993 (14) | ref|XP_009627746.1| | 1e-38 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Nicotiana tom | 673 | 022363 | gb|ADP37417.1| | 1e-50 | ethylene-responsive-element-binding factor 2 [Petunia x hybrida] |
| JMFF035A02 | Sequence | 573 | 012481 (35) | gb|ACG70967.1| | 3e-115 | translation elongation factor 1, partial [Ziziphus jujuba] | 741 | 008993 (14) | gb|AAR83865.1| | 3e-93 | elongation factor 1-alpha [Capsicum annuum] |
| JMFF036F08 | Sequence | 639 | 012481 (35) | gb|ABF94275.1| | 2e-138 | Elongation factor 1-alpha, putative, expressed [Oryza sativa Japonica Group] | 685 | 008993 (14) | ref|XP_009773066.1| | 8e-84 | PREDICTED: elongation factor 1-alpha, partial [Nicotiana sylvestris] |
| JMFF037G17 | Sequence | 576 | 012481 (35) | gb|AFW87115.1| | 8e-114 | putative translation elongation factor Tu family protein isoform 1 [Zea mays] g | 763 | 008993 (14) | gb|AAR83865.1| | 4e-97 | elongation factor 1-alpha [Capsicum annuum] |
| JMFF041E12 | Sequence | 615 | 008850 (5) | 545 | 008993 (14) | ||||||
| JMFN013C03 | Sequence | 623 | 008993 (14) | gb|AAR83865.1| | 9e-102 | elongation factor 1-alpha [Capsicum annuum] | |||||
| JMFS012A05 | Sequence | 594 | 008993 (14) | ref|XP_009627746.1| | 4e-46 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Nicotiana tom | |||||
| JMSF009I07 | Sequence | 319 | 012481 (35) | dbj|BAJ91931.1| | 2e-48 | predicted protein [Hordeum vulgare subsp. vulgare] | 752 | 008993 (14) | gb|AAR83865.1| | 4e-97 | elongation factor 1-alpha [Capsicum annuum] |
This contig is upended
. : . : . : . : . : . :
JMFN013C03- GGCTCTTCAAGAAGCACT-CCCAGGTG
rJMSF009I07+ GCACTCCCCAGGTG
rJMFF037G17+ GCACTCCCCAGGTG
rJMFF030F17+ TCAAGAAGCACT-CCCAGGTG
rJMFF006A06+ TCAAGAAGCACT-CCCAGGTG
rJMFF006C24+ G
____________________________________________________________
consensus GGCTCTTCAAGAAGCACT-CCCAGGTG
. : . : . : . : . : . :
JMFN013C03- ACAATGTTGGGTTCAACGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTG
rJMSF009I07+ ACAATGTTGGGTTCAACGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTG
rJMFF037G17+ ACAATGTTGGGTTCAACGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTG
rJMFF030F17+ ACAATGTTGGGTTCAACGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTG
rJMFF006A06+ ACAATGTTGGGTTCAACGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTG
rJMFF035A02+ GTTGGGTTCAACGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTG
rJMFF016H10+ CAATGTTGGGTTCAACGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTT
rJMFF026C08+ GGTTCAACGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTG
rJMFF036F08+ GGGTATGTTG
rJMFF027P11+ GGGTATGTTG
rJMFF006C24+ ACAATGTTGGGTTCAACGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTG
____________________________________________________________
consensus ACAATGTTGGGTTCAACGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTG
. : . : . : . : . : . :
JMFN013C03- CCTCCAATTCCAAGGATGATCCAGCCAAGGGGGCTTCTAGCTTCACCTCCCAGGT-CATT
rJMSF009I07+ CCTCCAATTCCAAGGATGATCCAGCCAAGGGGGCTTCTAGCTTCACCTCCCAGGT-CATT
rJMFF037G17+ CCTCCAATTCCAAGGATGATCCAGCCAAGGGGGCTTCTAGCTTCACCTCCCAGGT-CATT
rJMFF030F17+ CCTCCAATTCCAAGGATGATCCAGCCAAGGGGGCTTCTAGCTTCACCTCCCAGGT-CATT
rJMFF006A06+ CCTCCAATTCCAAGGATGATCCAGCCAAGGGGGCTTCTAGCTTCACCTCCCAGGT-CATT
rJMFF035A02+ CCTCCAATTCCAAGGATGATCCAGCCAAGGGGGCTTCTAGCTTCACCTCCCAGGT-CATT
rJMFF016H10+ CCTCCAATTCCAAGGATGATCCAGCCAAGGGGGCTTCTAGCTTCACCTCCCAGGT-CATT
rJMFF026C08+ CCTCCAATTCCAAGGATGATCCAGCCAAGGGGGCTTCTAACTTCACCTCCCCAGGTCATT
rJMFF036F08+ CCTCCAATTCCAAGGATGATCCAGCCAAGGGGGCTTCTAGCTTCACCTCCCAGGT-CATT
rJMFF027P11+ CCTCCAATTCCAAGGATGATCCAGCCAAGGGGGCTTCTAGCTTCACCTCCCAGGTCCATT
rJMFF006C24+ CCTCCAATTCCAAGGATGATCCAGCCAAGGGGGCTTCTAGCTTCACCTCCCAGGT-CATT
____________________________________________________________
consensus CCTCCAATTCCAAGGATGATCCAGCCAAGGGGGCTTCTAGCTTCACCTCCCAGGT-CATT
. : . : . : . : . : . :
JMFN013C03- ATCATGAACCACCCAGG-CCAGATTGGTAATGGTTATGCCCCTGTGCTTGACTGTCACAC
rJMSF009I07+ ATCATGAACCACCCAGG-CCAGATTGGTAATGGTTATGCCCCTGTGCTTGACTGTCACAC
rJMFF037G17+ ATCATGAACCACCCAGG-CCAGATTGGTAATGGTTATGCCCCTGTGCTTGACTGTCACAC
rJMFF030F17+ ATCATGAACCACCCAGG-CCAGATTGGTAATGGTTATGCCCCTGTGCTTGACTGTCACAC
rJMFF006A06+ ATCATGAACCACCCAGG-CCAGATTGGTAATGGTTATGCCCCTGTGCTTGACTGTCACAC
rJMFF035A02+ ATCATGAACCACCCAGG-CCAGATTGGTAATGGTTATGCCCCTGTGCTTGACTGTCACAC
rJMFF016H10+ ATCATGAACCACCCAGG-CCAGATTGGTAATGGTTATGCCCCTGTGCTTGACTGTCACAC
rJMFF026C08+ ATCATGAACCACCCAGGCCCAGATTGGTAATGGTTATGCCCCTGTGCTTGACTGTCACAC
rJMFF036F08+ ATCATGAACCACCCAGG-CCAGATTGGTAATGGTTATGCCCCTGTGCTTGACTGTCACAC
rJMFF027P11+ ATCATGAACCACCCAGG-CCAGATTGGTAATGGTTATGCCCCTGTGCTTGACTGTCACAC
rJMFF006C24+ ATCATGAACCACCCAGG-CCAGATTGGTAATGGTTATGCCCCTGTGCTTGACTGTCACAC
____________________________________________________________
consensus ATCATGAACCACCCAGG-CCAGATTGGTAATGGTTATGCCCCTGTGCTTGACTGTCACAC
. : . : . : . : . : . :
JMFN013C03- CTCCCACATTGCTGTCAAGTTTGCTGAACTCATGACTAAGATTGATAGAAGGTCTGGTAA
rJMSF009I07+ CTCCCACATTGCTGTCAAGTTTGCTGAACTCATGACTAAGATTGATAGAAGGTCTGGTAA
rJMFF037G17+ CTCCCACATTGCTGTCAAGTTTGCTGAACTCATGACTAAGATTGATAGAAGGTCTGGTAA
rJMFF030F17+ CTCCCACATTGCTGTCAAGTTTGCTGAACTCATGACTAAGATTGATAGAAGGTCTGGTAA
rJMFF006A06+ CTCCCACATTGCTGTCAAGTTTGCTGAACTCATGACTAAGATTGATAGAAGGTCTGGTAA
rJMFF035A02+ CTCCCACATTGCTGTCAAGTTTGCTGAACTCATGACTAAGATTGATAGAAGGTCTGGTAA
rJMFF016H10+ CTCCCACATTGCTGTCAAGTTTGCTGAACTCATGACTAAGATTGATAGAAGGTCTGGTAA
rJMFF026C08+ CTCCCACATTACTGTCAAGTTTGCTGAACTCATGACTAAGATTGATAGAAGGTCTGGTAA
rJMFF036F08+ CTCCCACATTGCTGTCAAGTTTGCTGAACTCATGACTAAGATTGATAGAAGGTCTGGTAA
rJMFF027P11+ CTCCCACATTGCTGTCAAGTTTGCTGAACTCATGACTAAGATTGATAGAAGGTCTGGTAA
rJMFF006C24+ CTCCCACATTGCTGTCAAGTTTGCTGAACTCATGACTAAGATTGATAGAAGGTCTGGTAA
____________________________________________________________
consensus CTCCCACATTGCTGTCAAGTTTGCTGAACTCATGACTAAGATTGATAGAAGGTCTGGTAA
. : . : . : . : . : . :
JMFN013C03- GGAGCTTGAGAAGGAGCCCAAATTCCTCAAGAACGGAGATGCTGGTTTCGTGAAGATGAT
rJMSF009I07+ GGAGCTTGAGAAGGAGCCCAAATTCCTCAAGAACGGAGATGCTGGTTTCGTGAAGATGAT
rJMFF037G17+ GGAGCTTGAGAAGGAGCCCAAATTCCTCAAGAACGGAGATGCTGGTTTCGTGAAGATGAT
rJMFF030F17+ GGAGCTTGAGAAGGAGCCCAAATTCCTCAAGAACGGAGATGCTGGTTTCGTGAAGATGAT
rJMFF006A06+ GGAGCTTGAGAAGGAGCCCAAATTCCTCAAGAACGGAGATGCTGGTTTCGTGAAGATGAT
rJMFF035A02+ GGAGCTTGAGAAGGAGCCCAAATTCCTCAAGAACGGAGATGCTGGTTTCGTGAAGATGAT
rJMFF016H10+ GGAGCTTGAGAAGGAGCCCAAATTCCTCAAGAACGGAGATGCTGGTTTCGTGAAGATGAT
rJMFF026C08+ GGAGCTTGAGAAGGAGCCCAAATTCCTCAAGAACGGAGATGCTGGTTTCGTGAAGATGAT
rJMFF036F08+ GGAGCTTGAGAAGGAGCCCAAATTCCTCAAGAACGGAGATGCTGGTTTCGTGAAGATGAT
rJMFF027P11+ GGAGCTTGAGAAGGAGCCCAAATTCCTCAAGAACGGAGATGCTGGTTTCGTGAAGATGAT
rJMFF006C24+ GGAGCTTGAGAAGGAGCCCAAATTCCTCAAGAACGGAGATGCTGGTTTCGTGAAGATGAT
____________________________________________________________
consensus GGAGCTTGAGAAGGAGCCCAAATTCCTCAAGAACGGAGATGCTGGTTTCGTGAAGATGAT
. : . : . : . : . : . :
JMFN013C03- TCCGACTAAGCCTATGGTTGTGGAAACCTTCTCTGAGTACCCGCCACTGGGGCGTTTTGC
rJMSF009I07+ TCCGACTAAGCCTATGGTTGTGGAAACCTTCTCTGAGTACCCGCCACTGGGGCGTTTTGC
rJMFF037G17+ TCCGACTAAGCCTATGGTTGTGGAAACCTTCTCTGAGTACCCGCCACTGGGGCGTTTTGC
rJMFF030F17+ TCCGACTAAGCCTATGGTTGTGGAAACCTTCTCTGAGTACCCGCCACTGGGGCGTTTTGC
rJMFF006A06+ TCCGACTAAGCCTATGGTTGTGGAAACCTTCTCTGAGTACCCGCCACTGGGGCGTTTTGC
rJMFF035A02+ TCCGACTAAGCCTATGGTTGTGGAAACCTTCTCTGAGTACCCGCCACTGGGGCGTTTTGC
rJMFF016H10+ TCCGACTAAGCCTATGGTTGTGGAAACCTTCTCTGAGTACCCGCCACTGGGGCGTTTTGC
rJMFF026C08+ TCCGACTAAGCCTATGGTTGTGGAAACCTTCTCTGAGTACCCGCCACTGGGGCGTTTTGC
rJMFF036F08+ TCCGACTAAGCCTATGGTTGTGGAAACCTTCTCTGAGTACCCGCCACTGGGGCGTTTTGC
rJMFF027P11+ TCCGACTAAGCCTATGGTTGTGGAAACCTTCTCTGAGTACCCGCCACTGGGGCGTTTTGC
rJMFF006C24+ TCCGACTAAGCCTATGGTTGTGGAAACCTTCTCTGAGTACCCGCCACTGGGGCGTTTTGC
____________________________________________________________
consensus TCCGACTAAGCCTATGGTTGTGGAAACCTTCTCTGAGTACCCGCCACTGGGGCGTTTTGC
. : . : . : . : . : . :
JMFN013C03- TGTGAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGTGTGGATAAGAAGGA
rJMSF009I07+ TGTGAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGTGTGGATAAGAAGGA
rJMFF037G17+ TGTGAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGTGTGGATAAGAAGGA
rJMFF030F17+ TGTGAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGTGTGGATAAGAAGGA
rJMFF006A06+ TGTGAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGTGTGGATAAGAAGGA
rJMFF035A02+ TGTGAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGTGTGGATAAGAAGGA
rJMFF016H10+ TGTGAGGGGCATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGTGTGGATAAGAAGGA
rJMFF026C08+ TGTGAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGTGTGGATAAGAAGGA
rJMFF036F08+ TGTGAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGTGTGGATAAGAAGGA
rJMFF027P11+ TGTGAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGTGTGGATAAGAAGGA
rJMFF006C24+ TGTGAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGTGTGGATAAGAAGGA
____________________________________________________________
consensus TGTGAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGTGTGGATAAGAAGGA
. : . : . : . : . : . :
JMFN013C03- TCCAACTGGTGCCAAGGTTACCAAGGCTGCCCAGAAGAAGAAGTGAACCGTGCTGGCTCA
rJMSF009I07+ TCCAACTGGTGCCAAGGTTACCAAGGCTGCCCAGAAGAAGAAGTGAACCGTGCTGGCTCA
rJMFF037G17+ TCCAACTGGTGCCAAGGTTACCAAGGCTGCCCAGAAGAAGAAGTGAACCGTGCTGGCTCA
rJMFF030F17+ TCCAACTGGTGCCAAGGTTACCAAGGCTGCCCAGAAGAAGAAGTGAACCGTGCTGGCTCA
rJMFF006A06+ TCCAACTGGTGCCAAGGTTACCAAGGCTGCCCAGAAGAAGAAGTGAACCGTGCTGGCTCA
rJMFF035A02+ TCCAACTGGTGCCAAGGTTACCAAGGCTGCCCAGAAGAAGAAGTGAACCGTGCTGGCTCA
rJMFF016H10+ TCCAACTGGTGCCAAGGTTACCAAGGCTGCCCAGAAGAAGAAGTGAACCGTGCTGGCTCA
rJMFF026C08+ TCCAACTGGTGCCAAGGTTACCAAGGCTGCCCAGAAGAAGAAGTGAACCGTGCTGGCTCA
rJMFF036F08+ TCCAACTGGTGCCAAGGTTACCAAGGCTGCCCAGCAGAAGAAGTGAACCGTGCTGGCTCA
rJMFF027P11+ TCCAACTGGTGCCAAGGTTACCAAGGCTGCCCAGAAGAAGAAGTGAACCGTGCTGGCTCA
rJMFF006C24+ TCCAACTGGTGCCAAGGTTACCAAGGCTGCCCAGAAGAAGAAGTGAACCGTGCTGGCTCA
rJMFF041E12- TGGTGCCAAGGTTACCAAGGCTGCCCAGAAGAAGAAGTGAACCGTGCTGGCTCA
____________________________________________________________
consensus TCCAACTGGTGCCAAGGTTACCAAGGCTGCCCAGAAGAAGAAGTGAACCGTGCTGGCTCA
. : . : . : . : . : . :
JMFN013C03- TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
rJMSF009I07+ TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
rJMFF037G17+ TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
rJMFF030F17+ TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
rJMFF006A06+ TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
rJMFF035A02+ TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
rJMFF016H10+ TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
rJMFF026C08+ TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
rJMFF036F08+ TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
rJMFF027P11+ TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
rJMFF006C24+ TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
rJMFF041E12- TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
____________________________________________________________
consensus TAAACTCTGCTTTAATAACGCTTGTCAAAAAGAATTCTCTTGGTTTAGTAATGTTGTACT
. : . : . : . : . : . :
JMFN013C03- AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCC
rJMSF009I07+ AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCCA
rJMFF037G17+ AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCCA
rJMFF030F17+ AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCCA
rJMFF006A06+ AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCCA
rJMFF035A02+ AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCCA
rJMFF016H10+ AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCCA
rJMFF026C08+ AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCCA
rJMFF036F08+ AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCCA
rJMFF027P11+ AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCCA
rJMFF006C24+ AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCCA
rJMFF041E12- AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCCA
____________________________________________________________
consensus AGTCTGGTCTTCGTTTTATTTCATGTGTTGTAGTCTTTTGCCCTGTATGTTTGGTACCCA
. : . : . : . : . : . :
rJMSF009I07+ TTATTCACAGAATTGGGTACTAGACAGGCGGTGGCGAGTCTTGTGTCTTTTAGTTTTCTT
rJMFF037G17+ TTATTCACAGAATTGGGTACTAGACAGGCGGTGGCGAGTCTTGTGTCTTTTAGTTTTCTT
rJMFF030F17+ TTATTCACAGAATTGGGTACTAGACAGGCGGTGGCGAGTCTTGTGTCTTTTAGTTTTCTT
rJMFF006A06+ TTATTCACAGAATTGGGTACTAGACAGGCGGTGGCGAGTCTTGTGTCTTTTAGTTTTCTT
rJMFF035A02+ TTATTCACAGAATTGGGTACTAGACAGGCGGTGGCGAGTCTTGTGTCTTTTAGTTTTCTT
rJMFF016H10+ TTATTCACAGAATTGGGTACTAGACAGGCGGTGGCGAGTCTTGTGTCTTTTAGTTTTCTT
rJMFF026C08+ TTATTCACAGAATTGGGTACTAGACAGGCGGTGGCGAGTCTTGTGTCTTTTAGTTTTCTT
rJMFF036F08+ TTATTCACAGAATTGGGTACTAGACAGGCGGTGGCGAGTCTTGTGTCTTTTAGTTTTCTT
rJMFF027P11+ TTATTCACAGAATTGGGTACTAGACAGGCGGTGGCGAGTCTTGTGTCTTTTAGTTTTCTT
rJMFF006C24+ TTATTCACAGAATTGGGTACTAGACAGGCGGTGGCGAGTCTTGTGTCTTTTAGTTTTCTT
rJMFF041E12- TTATTCACAGAATTGGGTACTAGACAGGCGGTGGCGAGTCTTGTGTCTTTTAGTTTTCTT
____________________________________________________________
consensus TTATTCACAGAATTGGGTACTAGACAGGCGGTGGCGAGTCTTGTGTCTTTTAGTTTTCTT
. : . : . : . : . : . :
rJMSF009I07+ GCTATGTGGTTTGATGTTTTGAGGTGCCTTGGTATATACAAAGGCGGCTTTGGAGTTATG
rJMFF037G17+ GCTATGTGGTTTGATGTTTTGAGGTGCCTTGGTATATACAAAGGCGGCTTTGGAGTTATG
rJMFF030F17+ GCTATGTGGTTTGATGTTTTGAGGTGC
rJMFF006A06+ GCTATGTGGTTTGATGTTTTGAGGTGCCTTGGTATATACAAAGGCGGCTTTGGAGTTATG
rJMFF035A02+ GCTATGTGGTTTGATGTTTTGAGGTGCCTTGGTATATACAAAGGCGGCTTTGGAGTTATG
rJMFF016H10+ GCTATGTGGTTTGATGTTTTGAGGTGCCTTGGTATATACAAAGGCGGCTTTGGAGTTATG
rJMFF026C08+ GCTATGTGGTTTGATGTTTTGAGGTGCCTTGGTATATACAAAGGCGGCTTTGGAGTTATG
rJMFF036F08+ GCTATGTGGTTTGATGTTTTGAGGTGCCTTGGTATATACAAAGGCGGCTTTGGAGTTATG
rJMFF027P11+ GCTATGTGGTTTGATGTTTTGAGGTGCCTTGGTATATACAAAGGCGGCTTTGGAGTTATG
rJMFF006C24+ GCTATGTGGTTTGATGTTTTGAGGTGCCTTGGTATATACAAAGGCGGCTTTGGAGTTATG
rJMFF041E12- GCTATGTGGTTTGATGTTTTGAGGTGCCTTGGTATATACAAAGGCGGCTTTGGAGTTATG
____________________________________________________________
consensus GCTATGTGGTTTGATGTTTTGAGGTGCCTTGGTATATACAAAGGCGGCTTTGGAGTTATG
. : . : . : . : . : . :
rJMSF009I07+ TTGCCATGCGGCGAG
rJMFF037G17+ TTGCCATGCGGCGAGTGTT
rJMFF006A06+ TTGCCATGCGGCGAGTGTTTGATATTA
rJMFF035A02+ TTGCCATGCGGCGAGTGTTTGATATTAA
rJMFF016H10+ TTGCCATGCGGCGAGTG
rJMFF026C08+ TTGCCATGCGGCGAGTGTTTGATATTAAT
rJMFF036F08+ TTGCCATGCGGCGAGTG
rJMFF027P11+ TTGCCATGCGGCGAGTGTTTGATATTAAT
rJMFF006C24+ TTGCCATGCGGCGAGTGTTTGATATTAAT
rJMFF041E12- TTGCCATGCGGCGAGTGTTTGATATTAATTTATGAACTTGTTTATGTTAATXXXXXXXXX
____________________________________________________________
consensus TTGCCATGCGGCGAGTGTTTGATATTAATTTATGAACTTGTTTATGTTAATNNNNNNNNN
. : . : . : . : . : . :
rJMFF041E12- XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAAATTTTTTCCCGAAAAAAGAATT
JMFF034J16- TTTCCCGAAAAAAGAATT
____________________________________________________________
consensus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAATTTTTTCCCGAAAAAAGAATT
. : . : . : . : . : . :
rJMFF041E12- ACTTTCTTTCTTTCTCCCATCATTTCCAAGAAAATCTCTGAAAAAAGCTTTCTTTTGATT
JMFF034J16- ACTTTCTTTCTTTCTCCCATCATTTCCAAGAAAATCTCTGAAAAAAGCTTTCTTTTGATT
JMFS012A05- TTTCTTTCTCCCATCATTTCCAAGAAAATCTCTGAAAAAAGCTTTCTTTTGATT
____________________________________________________________
consensus ACTTTCTTTCTTTCTCCCATCATTTCCAAGAAAATCTCTGAAAAAAGCTTTCTTTTGATT
. : . : . : . : . : . :
rJMFF041E12- CAAAGCAAGAAATCATGTGTGGAGGTGCTATAATCTCCGATATCATACCGCCCAGCCGGT
JMFF034J16- CAAAGCAAGAAATCATGTGTGGAGGTGCTATAATCTCCGATATCATACCGCCCAGCCGGT
JMFS012A05- CAAAGCAAGAAATCATGTGTGGAGGTGCTATAATCTCCGATATCATACCGCCCAGCCGGT
____________________________________________________________
consensus CAAAGCAAGAAATCATGTGTGGAGGTGCTATAATCTCCGATATCATACCGCCCAGCCGGT
. : . : . : . : . : . :
rJMFF041E12- CGTCGCGCCGG
JMFF034J16- CGTCGCGCCGGCTCACCGCCGATTTGCTCTGGGGACCCGCTGATCTGAGCAGCAACAACG
JMFS012A05- CGTCGCGCCGGCTCACCGCCGATTTGCTCTGGGGACCCGCTGATCTGAGCAGCAACAACG
____________________________________________________________
consensus CGTCGCGCCGGCTCACCGCCGATTTGCTCTGGGGACCCGCTGATCTGAGCAGCAACAACG
. : . : . : . : . : . :
JMFF034J16- GCGGGAAGAAGAAGAACCGCAACAGCAACTCGTCTGGAAGCTTCTACTCCAGGCCCTCGC
JMFS012A05- GCGGGAAGAAGAAGAACCGCAACAGCAACTCGTCTGGAAGCTTCTACTCCAGGCCCTCGC
____________________________________________________________
consensus GCGGGAAGAAGAAGAACCGCAACAGCAACTCGTCTGGAAGCTTCTACTCCAGGCCCTCGC
. : . : . : . : . : . :
JMFF034J16- GATCTGGTATCACCGACATCGATAATGACTTCGAAGCTGATTTTCAGCACTTTAAGGACT
JMFS012A05- GATCTGGTATCACCGACATCGATAATGACTTCGAAGCTGATTTTCAGCACTTTAAGGACT
____________________________________________________________
consensus GATCTGGTATCACCGACATCGATAATGACTTCGAAGCTGATTTTCAGCACTTTAAGGACT
. : . : . : . : . : . :
JMFF034J16- ACTCTGATGTTGAGGTGGAAGAGGTGGATGCCAAGCCCTTCGATTTCTCCGCTTCCAAGC
JMFS012A05- ACTCTGATGTTGAGGTTGAAGAGGTGGATGCCAAGCCCTTCGATTTCTCCGCTTCCAAGC
____________________________________________________________
consensus ACTCTGATGTTGAGGTTGAAGAGGTGGATGCCAAGCCCTTCGATTTCTCCGCTTCCAAGC
. : . : . : . : . : . :
JMFF034J16- AGCCTGGATTCTCTTCTGGCTCCAACTCTGATTTAACCAAGGATGCTGACAAGTCCTCAA
JMFS012A05- AGCCTGGATTCTCTTCTGGCTCCAACTCTGATTTAACCAAGGATGCTGACAAGTCCTCAA
____________________________________________________________
consensus AGCCTGGATTCTCTTCTGGCTCCAACTCTGATTTAACCAAGGATGCTGACAAGTCCTCAA
. : . : . : . : . : . :
JMFF034J16- AGAGGAAAAGGAAGAATCAGTACAGGGGTATCCGACAGCGTCCTTGGGGTAAATGGGCTG
JMFS012A05- AGAGGAAAAGGAAGAATCAGTACAGGGGTATCCGACAGCGTCCTTGGGGTAAATGGGCTG
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consensus AGAGGAAAAGGAAGAATCAGTACAGGGGTATCCGACAGCGTCCTTGGGGTAAATGGGCTG
. : . : . : . : . : . :
JMFF034J16- CTGAGATACGTGATCCTGTGAAAGGTGTCCGTGTCTGGCTTGGAACTTTCAACACTGCTG
JMFS012A05- CTGAGATACGTGATCCTGTGAAAGGTGTCCGTGTCTGGCTTGGAACTTTCAACACTGCTG
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consensus CTGAGATACGTGATCCTGTGAAAGGTGTCCGTGTCTGGCTTGGAACTTTCAACACTGCTG
. : . : . : . : . : . :
JMFF034J16- AAGAGGCTGCAAGAGCTTATGAT
JMFS012A05- AAGAGGCTGCAAGAGCTTATGATGTTGAGGCTCGAAGGATCAGGGGCAAGAAAGCTAAGG
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consensus AAGAGGCTGCAAGAGCTTATGATGTTGAGGCTCGAAGGATCAGGGGCAAGAAAGCTAAGG