Contig 008992:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039F20Sequence532008992 (4)gb|AEH41591.1|3e-1069-cis-epoxycarotenoid dioxygenase 1 [Ipomoea nil]776006926 (3)gb|AAY82458.1|7e-679-cis-epoxycarotenoid dioxygenase 1 [Cuscuta reflexa]
JMFF041M11Sequence647008992 (4)gb|AEH41591.1|1e-1339-cis-epoxycarotenoid dioxygenase 1 [Ipomoea nil]561006926 (3)gb|AAY82458.1|5e-179-cis-epoxycarotenoid dioxygenase 1 [Cuscuta reflexa]
JMFF051A15Sequence644008992 (4)gb|AEH41591.1|4e-1279-cis-epoxycarotenoid dioxygenase 1 [Ipomoea nil]564006926 (3)gb|AAY82458.1|1e-179-cis-epoxycarotenoid dioxygenase 1 [Cuscuta reflexa]
JMFS011G09Sequence601008992 (4)ref|NP_001275103.1|2e-449-cis-epoxy-carotenoid dioxygenase 1 [Solanum tuberosum] gb|AAT75151.1| 9-cis-ep

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF051A15+ CGGGACTGGGATTTCAATGTCCGGAGAT-TCTTCCCCGGT
JMFF041M11+ TCCGGGACTGGGATTTCAATGTCCGGAGATNTCTCCCCGGTT
                      ____________________________________________________________
consensus TCCGGGACTGGGATTTCAATGTCCGGAGATNTCTTCCCGGTT
 
. : . : . : . : . : . :
JMFF051A15+ TTTGAGAACCGGAAGTACTTCAAGTACGGCTTCTGAATCACGTCGTAGCTGAGAGCGAAG
JMFF041M11+ TTTGAGAACCGGAAGTACTTCAAGTACGGCTTCTGAATCACGTCGTAGCTGAGAGCGAAG
                      ____________________________________________________________
consensus TTTGAGAACCGGAAGTACTTCAAGTACGGCTTCTGAATCACGTCGTAGCTGAGAGCGAAG
 
. : . : . : . : . : . :
JMFF051A15+ AGCTCGCCGGAAACAGGGTCGAGTTTGGGGTGAGCGATCATTGTGGATTTCAGTTCGCCG
JMFF039F20+ CAGGGTCGAGTTTGGGGTGAGCGATCATTGTGGATTTCAGTTCGCCG
JMFF041M11+ AGCTCGCCGGAAACAGGGTCGAGTTTGGGGTGAGCGATCATTGTGGATTTCAGTTCGCCG
                      ____________________________________________________________
consensus AGCTCGCCGGAAACAGGGTCGAGTTTGGGGTGAGCGATCATTGTGGATTTCAGTTCGCCG
 
. : . : . : . : . : . :
JMFF051A15+ TCAAAGTCGTATCTTTCCACGGTTTTTAAGTCGCCGGCGGGCGTGACTCGCACGTGGTAC
JMFF039F20+ TCAAAGTCGTATCTTTCCACGGTTTTTAAGTCGCCGGCGGGCGTGACTCGCACGTGGTAC
JMFF041M11+ TCAAAGTCGTATCTTTCCACGGTTTTTAAGTCGCCGGCGGGCGTGACTCGCACGTGGTAC
                      ____________________________________________________________
consensus TCAAAGTCGTATCTTTCCACGGTTTTTAAGTCGCCGGCGGGCGTGACTCGCACGTGGTAC
 
. : . : . : . : . : . :
JMFF051A15+ GGCAAATCGTCTTCCGACATCGCTAGCAAGCGGTTATTGAAGTAGACCAGCCCGGCGTTA
JMFF039F20+ GGCAAATCGTCTTCCGACATCGCTAGCAAGCGGTTATTGAAGTAGACCAGCCCGGCGTTA
JMFF041M11+ GGCAAATCGTCTTCCGACATCGCTAGCAAGCGGTTATTGAAGTAGACCAGCCCGGCGTTA
                      ____________________________________________________________
consensus GGCAAATCGTCTTCCGACATCGCTAGCAAGCGGTTATTGAAGTAGACCAGCCCGGCGTTA
 
. : . : . : . : . : . :
JMFF051A15+ GCCACTCCGGTGCCTTTGCTGTGATCGACGAGCCCGAAAAGCCCGCGGGCGTAGAAAAGC
JMFF039F20+ GCCACTCCGGTGCCTTTGCTGTGATCGACGAGCCCGAAAAGCCCGCGGGCGTAGAAAAGC
JMFF041M11+ GCCACTCCGGTGCCTTTGCTGTGATCGACGAGCCCGAAAAGCCCGCGGGCGTAGAAAAGC
                      ____________________________________________________________
consensus GCCACTCCGGTGCCTTTGCTGTGATCGACGAGCCCGAAAAGCCCGCGGGCGTAGAAAAGC
 
. : . : . : . : . : . :
JMFF051A15+ ATCAGCCTTGCAATCCCAGTGTGGCCGTGGAGCTCCCCAATGGCTTTCGGGAAAACGGGC
JMFF039F20+ ATCAGCCTTGCAATCCCAGTGTGGCCGTGGAGCTCCCCAATGGCTTTCGGGAAAACGGGC
JMFF041M11+ ATCAGCCTTGCAATCCCAGTGTGGCCGTGGAGCTCCCCAATGGCTTTCGGGAAAACGGGC
                      ____________________________________________________________
consensus ATCAGCCTTGCAATCCCAGTGTGGCCGTGGAGCTCCCCAATGGCTTTCGGGAAAACGGGC
 
. : . : . : . : . : . :
JMFF051A15+ TTGCCCACGGCCCGTTCCTGGACCAATCTATGCGTCTCCGTGAACCGGCAAGAATAACTC
JMFF039F20+ TTGCCCACGGCCCGTTCCTGGACCAATCTATGCGTCTCCGTGAACCGGCAAGAATAACTC
JMFF041M11+ TTGCCCACGGCCCGTTCCTGGACCAATCTATGCGTCTCCGTGAACCGGCAAGAATAACTC
                      ____________________________________________________________
consensus TTGCCCACGGCCCGTTCCTGGACCAATCTATGCGTCTCCGTGAACCGGCAAGAATAACTC
 
. : . : . : . : . : . :
JMFF051A15+ ACTTCCCCCTTATTAAACTTCACGGCGTGAACCATGCCGTCACCGTCAAAGAAGTGGTGA
JMFF039F20+ ACTTCCCCCTTATTAAACTTCACGGCGTGAACCATGCCGTCACCGTCAAAGAAGTGGTGA
JMFF041M11+ ACTTCCCCCTTATTAAACTTCACGGCGTGAACCATGCCGTCACCGTCAAAGAAGTGGTGA
JMFS011G09+ A
                      ____________________________________________________________
consensus ACTTCCCCCTTATTAAACTTCACGGCGTGAACCATGCCGTCACCGTCAAAGAAGTGGTGA
 
. : . : . : . : . : . :
JMFF051A15+ CCGGCTACCGGCTCGTAGTGCGGGTTAGCGCCGTTCCGCACGTACACCCCCTCAATACAC
JMFF039F20+ CCGGCTACCGGCTCGTAGTGCGGGTTAGCGCCGTTCCGCACGTACACCCCCTCAATACAC
JMFF041M11+ CCGGCTACCGGCTCGTAGTGCGGGTTAGCGCCGTTCCGCACGTACACCCCCTCAATACAC
JMFS011G09+ CCGGCTACCGGCTCGTAGTGCGGGTTAGCGCCGTTCCGCACGTACACCCCCTCAATACAC
                      ____________________________________________________________
consensus CCGGCTACCGGCTCGTAGTGCGGGTTAGCGCCGTTCCGCACGTACACCCCCTCAATACAC
 
. : . : . : . : . : . :
JMFF051A15+ TCCGGGATCTTCCCCACCGCCGGAAGCCCCCGCCGGACTGGCTGCTCCGTCACCGGAGCA
JMFF039F20+ TCCGGGATCTTCCCCACCGCCGGAAGCCCCCGCCGGACTGGCTGCTCCGTCACCGGAGCA
JMFF041M11+ TCCGGGATCTTCCCCACCGCCGGAAGCCCCCGCCGGACTGGCTGCTCCGTCACCGGAGCA
JMFS011G09+ TCCGGGATCTTCCCCACCACCGGAAGCCCCCGCCGGACTGGCTGCTCCGTCACCGGAGCA
                      ____________________________________________________________
consensus TCCGGGATCTTCCCCACCGCCGGAAGCCCCCGCCGGACTGGCTGCTCCGTCACCGGAGCA
 
. : . : . : . : . : . :
JMFF051A15+ AAATT
JMFF039F20+ AAATT
JMFF041M11+ AAATT
JMFS011G09+ AAATTCCCGGCAATCTGAACCCTCGGGTCGGCCGTTTTAGGCAAAGGGTGCTCAAGCTCA
                      ____________________________________________________________
consensus AAATTCCCGGCAATCTGAACCCTCGGGTCGGCCGTTTTAGGCAAAGGGTGCTCAAGCTCA
 
. : . : . : . : . : . :
JMFS011G09+ TGCGCCGTTAACCCACCCTCCACTGCATCCAAGGCCATTGCAGCCATCCTCTGAAACAAA
                      ____________________________________________________________
consensus TGCGCCGTTAACCCACCCTCCACTGCATCCAAGGCCATTGCAGCCATCCTCTGAAACAAA
 
. : . : . : . : . : . :
JMFS011G09+ TTCCACCGCGGAGCCGCCGAAGAAGAAGAAGAAGAACACCGTTCCTCCACCGGACACGAA
                      ____________________________________________________________
consensus TTCCACCGCGGAGCCGCCGAAGAAGAAGAAGAAGAACACCGTTCCTCCACCGGACACGAA
 
. : . : . : . : . : . :
JMFS011G09+ ACCGCAACGCCTGAACTCAAACCGGTAACAGGACTGGAAGTCTGCTTGGGAAAATGGAGC
                      ____________________________________________________________
consensus ACCGCAACGCCTGAACTCAAACCGGTAACAGGACTGGAAGTCTGCTTGGGAAAATGGAGC
 
. : . : . : . : . : . :
JMFS011G09+ AGAGAAGGAGTAGTTTGCAGAGAGCAATTAACTCTCACGCTCTTTCTACTACACAACCTG
                      ____________________________________________________________
consensus AGAGAAGGAGTAGTTTGCAGAGAGCAATTAACTCTCACGCTCTTTCTACTACACAACCTG
 
. : . : . : . : . : . :
JMFS011G09+ GGCTTACAACTTATAGCAGTAGAAGCTGCAGTACTGTAATTCGCCATGGCTGCCTTTATA
                      ____________________________________________________________
consensus GGCTTACAACTTATAGCAGTAGAAGCTGCAGTACTGTAATTCGCCATGGCTGCCTTTATA
 
. : . : . : . : . : . :
JMFS011G09+ TATTCTCTGCAAATTCTTGATTGTGATTGTATAATAAGAGTACGTGTTCGTTGTAGTTTT
                      ____________________________________________________________
consensus TATTCTCTGCAAATTCTTGATTGTGATTGTATAATAAGAGTACGTGTTCGTTGTAGTTTT
 
. : . : . : . : . : . :
JMFS011G09+ GAGGAAAGAAAGAGTAATGCAGATCAGAGAAGAAGACTACTGAGCTAGAATGATGAGTAA
                      ____________________________________________________________
consensus GAGGAAAGAAAGAGTAATGCAGATCAGAGAAGAAGACTACTGAGCTAGAATGATGAGTAA