Contig 008992:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039F20Sequence532008992 (4)gb|AEH41591.1|3e-1069-cis-epoxycarotenoid dioxygenase 1 [Ipomoea nil]776006926 (3)gb|AAY82458.1|7e-679-cis-epoxycarotenoid dioxygenase 1 [Cuscuta reflexa]
JMFF041M11Sequence647008992 (4)gb|AEH41591.1|1e-1339-cis-epoxycarotenoid dioxygenase 1 [Ipomoea nil]561006926 (3)gb|AAY82458.1|5e-179-cis-epoxycarotenoid dioxygenase 1 [Cuscuta reflexa]
JMFF051A15Sequence644008992 (4)gb|AEH41591.1|4e-1279-cis-epoxycarotenoid dioxygenase 1 [Ipomoea nil]564006926 (3)gb|AAY82458.1|1e-179-cis-epoxycarotenoid dioxygenase 1 [Cuscuta reflexa]
JMFS011G09Sequence601008992 (4)ref|NP_001275103.1|2e-449-cis-epoxy-carotenoid dioxygenase 1 [Solanum tuberosum] gb|AAT75151.1| 9-cis-ep

Alignment

This contig is upended


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JMFF051A15+                               CGGGACTGGGATTTCAATGTCCGGAGAT-TCTTCCCCGGT
JMFF041M11+                             TCCGGGACTGGGATTTCAATGTCCGGAGATNTCTCCCCGGTT
                      ____________________________________________________________
consensus                               TCCGGGACTGGGATTTCAATGTCCGGAGATNTCTTCCCGGTT
 
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JMFF051A15+           TTTGAGAACCGGAAGTACTTCAAGTACGGCTTCTGAATCACGTCGTAGCTGAGAGCGAAG
JMFF041M11+           TTTGAGAACCGGAAGTACTTCAAGTACGGCTTCTGAATCACGTCGTAGCTGAGAGCGAAG
                      ____________________________________________________________
consensus             TTTGAGAACCGGAAGTACTTCAAGTACGGCTTCTGAATCACGTCGTAGCTGAGAGCGAAG
 
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JMFF051A15+           AGCTCGCCGGAAACAGGGTCGAGTTTGGGGTGAGCGATCATTGTGGATTTCAGTTCGCCG
JMFF039F20+                        CAGGGTCGAGTTTGGGGTGAGCGATCATTGTGGATTTCAGTTCGCCG
JMFF041M11+           AGCTCGCCGGAAACAGGGTCGAGTTTGGGGTGAGCGATCATTGTGGATTTCAGTTCGCCG
                      ____________________________________________________________
consensus             AGCTCGCCGGAAACAGGGTCGAGTTTGGGGTGAGCGATCATTGTGGATTTCAGTTCGCCG
 
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JMFF051A15+           TCAAAGTCGTATCTTTCCACGGTTTTTAAGTCGCCGGCGGGCGTGACTCGCACGTGGTAC
JMFF039F20+           TCAAAGTCGTATCTTTCCACGGTTTTTAAGTCGCCGGCGGGCGTGACTCGCACGTGGTAC
JMFF041M11+           TCAAAGTCGTATCTTTCCACGGTTTTTAAGTCGCCGGCGGGCGTGACTCGCACGTGGTAC
                      ____________________________________________________________
consensus             TCAAAGTCGTATCTTTCCACGGTTTTTAAGTCGCCGGCGGGCGTGACTCGCACGTGGTAC
 
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JMFF051A15+           GGCAAATCGTCTTCCGACATCGCTAGCAAGCGGTTATTGAAGTAGACCAGCCCGGCGTTA
JMFF039F20+           GGCAAATCGTCTTCCGACATCGCTAGCAAGCGGTTATTGAAGTAGACCAGCCCGGCGTTA
JMFF041M11+           GGCAAATCGTCTTCCGACATCGCTAGCAAGCGGTTATTGAAGTAGACCAGCCCGGCGTTA
                      ____________________________________________________________
consensus             GGCAAATCGTCTTCCGACATCGCTAGCAAGCGGTTATTGAAGTAGACCAGCCCGGCGTTA
 
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JMFF051A15+           GCCACTCCGGTGCCTTTGCTGTGATCGACGAGCCCGAAAAGCCCGCGGGCGTAGAAAAGC
JMFF039F20+           GCCACTCCGGTGCCTTTGCTGTGATCGACGAGCCCGAAAAGCCCGCGGGCGTAGAAAAGC
JMFF041M11+           GCCACTCCGGTGCCTTTGCTGTGATCGACGAGCCCGAAAAGCCCGCGGGCGTAGAAAAGC
                      ____________________________________________________________
consensus             GCCACTCCGGTGCCTTTGCTGTGATCGACGAGCCCGAAAAGCCCGCGGGCGTAGAAAAGC
 
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JMFF051A15+           ATCAGCCTTGCAATCCCAGTGTGGCCGTGGAGCTCCCCAATGGCTTTCGGGAAAACGGGC
JMFF039F20+           ATCAGCCTTGCAATCCCAGTGTGGCCGTGGAGCTCCCCAATGGCTTTCGGGAAAACGGGC
JMFF041M11+           ATCAGCCTTGCAATCCCAGTGTGGCCGTGGAGCTCCCCAATGGCTTTCGGGAAAACGGGC
                      ____________________________________________________________
consensus             ATCAGCCTTGCAATCCCAGTGTGGCCGTGGAGCTCCCCAATGGCTTTCGGGAAAACGGGC
 
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JMFF051A15+           TTGCCCACGGCCCGTTCCTGGACCAATCTATGCGTCTCCGTGAACCGGCAAGAATAACTC
JMFF039F20+           TTGCCCACGGCCCGTTCCTGGACCAATCTATGCGTCTCCGTGAACCGGCAAGAATAACTC
JMFF041M11+           TTGCCCACGGCCCGTTCCTGGACCAATCTATGCGTCTCCGTGAACCGGCAAGAATAACTC
                      ____________________________________________________________
consensus             TTGCCCACGGCCCGTTCCTGGACCAATCTATGCGTCTCCGTGAACCGGCAAGAATAACTC
 
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JMFF051A15+           ACTTCCCCCTTATTAAACTTCACGGCGTGAACCATGCCGTCACCGTCAAAGAAGTGGTGA
JMFF039F20+           ACTTCCCCCTTATTAAACTTCACGGCGTGAACCATGCCGTCACCGTCAAAGAAGTGGTGA
JMFF041M11+           ACTTCCCCCTTATTAAACTTCACGGCGTGAACCATGCCGTCACCGTCAAAGAAGTGGTGA
JMFS011G09+                                                                      A
                      ____________________________________________________________
consensus             ACTTCCCCCTTATTAAACTTCACGGCGTGAACCATGCCGTCACCGTCAAAGAAGTGGTGA
 
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JMFF051A15+           CCGGCTACCGGCTCGTAGTGCGGGTTAGCGCCGTTCCGCACGTACACCCCCTCAATACAC
JMFF039F20+           CCGGCTACCGGCTCGTAGTGCGGGTTAGCGCCGTTCCGCACGTACACCCCCTCAATACAC
JMFF041M11+           CCGGCTACCGGCTCGTAGTGCGGGTTAGCGCCGTTCCGCACGTACACCCCCTCAATACAC
JMFS011G09+           CCGGCTACCGGCTCGTAGTGCGGGTTAGCGCCGTTCCGCACGTACACCCCCTCAATACAC
                      ____________________________________________________________
consensus             CCGGCTACCGGCTCGTAGTGCGGGTTAGCGCCGTTCCGCACGTACACCCCCTCAATACAC
 
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JMFF051A15+           TCCGGGATCTTCCCCACCGCCGGAAGCCCCCGCCGGACTGGCTGCTCCGTCACCGGAGCA
JMFF039F20+           TCCGGGATCTTCCCCACCGCCGGAAGCCCCCGCCGGACTGGCTGCTCCGTCACCGGAGCA
JMFF041M11+           TCCGGGATCTTCCCCACCGCCGGAAGCCCCCGCCGGACTGGCTGCTCCGTCACCGGAGCA
JMFS011G09+           TCCGGGATCTTCCCCACCACCGGAAGCCCCCGCCGGACTGGCTGCTCCGTCACCGGAGCA
                      ____________________________________________________________
consensus             TCCGGGATCTTCCCCACCGCCGGAAGCCCCCGCCGGACTGGCTGCTCCGTCACCGGAGCA
 
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JMFF051A15+           AAATT                                                       
JMFF039F20+           AAATT                                                       
JMFF041M11+           AAATT                                                       
JMFS011G09+           AAATTCCCGGCAATCTGAACCCTCGGGTCGGCCGTTTTAGGCAAAGGGTGCTCAAGCTCA
                      ____________________________________________________________
consensus             AAATTCCCGGCAATCTGAACCCTCGGGTCGGCCGTTTTAGGCAAAGGGTGCTCAAGCTCA
 
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JMFS011G09+           TGCGCCGTTAACCCACCCTCCACTGCATCCAAGGCCATTGCAGCCATCCTCTGAAACAAA
                      ____________________________________________________________
consensus             TGCGCCGTTAACCCACCCTCCACTGCATCCAAGGCCATTGCAGCCATCCTCTGAAACAAA
 
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JMFS011G09+           TTCCACCGCGGAGCCGCCGAAGAAGAAGAAGAAGAACACCGTTCCTCCACCGGACACGAA
                      ____________________________________________________________
consensus             TTCCACCGCGGAGCCGCCGAAGAAGAAGAAGAAGAACACCGTTCCTCCACCGGACACGAA
 
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JMFS011G09+           ACCGCAACGCCTGAACTCAAACCGGTAACAGGACTGGAAGTCTGCTTGGGAAAATGGAGC
                      ____________________________________________________________
consensus             ACCGCAACGCCTGAACTCAAACCGGTAACAGGACTGGAAGTCTGCTTGGGAAAATGGAGC
 
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JMFS011G09+           AGAGAAGGAGTAGTTTGCAGAGAGCAATTAACTCTCACGCTCTTTCTACTACACAACCTG
                      ____________________________________________________________
consensus             AGAGAAGGAGTAGTTTGCAGAGAGCAATTAACTCTCACGCTCTTTCTACTACACAACCTG
 
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JMFS011G09+           GGCTTACAACTTATAGCAGTAGAAGCTGCAGTACTGTAATTCGCCATGGCTGCCTTTATA
                      ____________________________________________________________
consensus             GGCTTACAACTTATAGCAGTAGAAGCTGCAGTACTGTAATTCGCCATGGCTGCCTTTATA
 
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JMFS011G09+           TATTCTCTGCAAATTCTTGATTGTGATTGTATAATAAGAGTACGTGTTCGTTGTAGTTTT
                      ____________________________________________________________
consensus             TATTCTCTGCAAATTCTTGATTGTGATTGTATAATAAGAGTACGTGTTCGTTGTAGTTTT
 
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JMFS011G09+           GAGGAAAGAAAGAGTAATGCAGATCAGAGAAGAAGACTACTGAGCTAGAATGATGAGTAA
                      ____________________________________________________________
consensus             GAGGAAAGAAAGAGTAATGCAGATCAGAGAAGAAGACTACTGAGCTAGAATGATGAGTAA