Contig 008990:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS011D07Sequence627008990 (2)ref|XP_007013810.1|3e-46Shaker pollen inward K+ channel isoform 2 [Theobroma cacao] gb|EOY31429.1| Shake
JMFS084A06Sequence627008990 (2)ref|XP_007013810.1|4e-47Shaker pollen inward K+ channel isoform 2 [Theobroma cacao] gb|EOY31429.1| Shake

Alignment

This contig is upended


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JMFS084A06+                                          TGGGTCATCAATGAGAAGATAAGTAGTTT
JMFS011D07+                                            GGTCATCAATGAGAAGATAAGTAGTTT
                      ____________________________________________________________
consensus                                            TGGGTCATCAATGAGAAGATAAGTAGTTT
 
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JMFS084A06+           TATCAAGGTAAGCAACAAAGAATGTCAACACAATATCTATAGCAAAAACTGCATTCACAA
JMFS011D07+           TATCAAGGTAAGCAACAAAGAATGTCAACACAATATCTATAGCAAAAACTGCATTCACAA
                      ____________________________________________________________
consensus             TATCAAGGTAAGCAACAAAGAATGTCAACACAATATCTATAGCAAAAACTGCATTCACAA
 
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JMFS084A06+           CATTGTCACAGATAGCAAGAGGTCCATTTGGCGTTTCTAGGAACCCAAACTCAAAAGGAG
JMFS011D07+           CATTGTCACAGATAGCAAGAGGTCCATTTGGCGTTTCTAGGAACCCAAACTCAAAAGGAG
                      ____________________________________________________________
consensus             CATTGTCACAGATAGCAAGAGGTCCATTTGGCGTTTCTAGGAACCCAAACTCAAAAGGAG
 
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JMFS084A06+           ATACCCATGCTGTGTAGAACACAAGTAGTACTAGAAATGTCTCCCAGTTCCTGTAATAGG
JMFS011D07+           ATACCCATGCTGTGTAGAACACAAGTAGTACTAGAAATGTCTCCCAGTTCCTGTAATAGG
                      ____________________________________________________________
consensus             ATACCCATGCTGTGTAGAACACAAGTAGTACTAGAAATGTCTCCCAGTTCCTGTAATAGG
 
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JMFS084A06+           GATCAAAGGGGGAGATGATGGCGCTGCGCAGACTAGCCTTGCGGTTGCTGCTAAGAGCTC
JMFS011D07+           GATCAAAGGGGGAGATGATGGCGCTGCGCAGACTAGCCTTGCGGTTGCTGCTAAGAGCTC
                      ____________________________________________________________
consensus             GATCAAAGGGGGAGATGATGGCGCTGCGCAGACTAGCCTTGCGGTTGCTGCTAAGAGCTC
 
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JMFS084A06+           CAAGAGAAGGAAGAATGTTGTTGTTTAAGCTATATTGAGAGCTCATATGAGAGCTCAAAT
JMFS011D07+           CAAGAGAAGGAAGAATGTTGTTGTTTAAGCTATATTGAGAGCTCATATGAGAGCTCAAAT
                      ____________________________________________________________
consensus             CAAGAGAAGGAAGAATGTTGTTGTTTAAGCTATATTGAGAGCTCATATGAGAGCTCAAAT
 
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JMFS084A06+           CATCCTTTGCCGAGAGTCTCTCTATCTCGCAGTCGATTTCTCTCATCCCACACATTAGCT
JMFS011D07+           CATCCTTTGCCGAGAGTCTCTCTATCTCGCAGTCGATTTCTCTCATCCCACACATTAGCT
                      ____________________________________________________________
consensus             CATCCTTTGCCGAGAGTCTCTCTATCTCGCAGTCGATTTCTCTCATCCCACACATTAGCT
 
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JMFS084A06+           TCCCCTTCCAGGATGCCCCCTTCGTTCTATTCTTTTCACTATTCATTATTATTCTTGCCA
JMFS011D07+           TCCCCTTCCAGGATGCCCCCTTCGTTCTATTCTTTTCACTATTCATTATTATTCTTGCCA
                      ____________________________________________________________
consensus             TCCCCTTCCAGGATGCCCCCTTCGTTCTATTCTTTTCACTATTCATTATTATTCTTGCCA
 
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JMFS084A06+           CACACAAGCATATATTATATTAATATAATATATGCATGTGTCTGGCCGTCTTCCCTCGTA
JMFS011D07+           CACACAAGCATATATTATATTAATATAATATATGCATGTGTCTGGCCGTCTTCCCTCGTA
                      ____________________________________________________________
consensus             CACACAAGCATATATTATATTAATATAATATATGCATGTGTCTGGCCGTCTTCCCTCGTA
 
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JMFS084A06+           CGTCTGCACAGCATGCAGCGGCTCGGCCACCGGAACCGCCGGTCGCCGACCACTACCGCC
JMFS011D07+           CGTCTGCACAGCATGCAGCGGCTCGGCCACCGGAACCGCCGGTCGCCGACCACTACCGCC
                      ____________________________________________________________
consensus             CGTCTGCACAGCATGCAGCGGCTCGGCCACCGGAACCGCCGGTCGCCGACCACTACCGCC
 
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JMFS084A06+           TCGTCAGAACGTGTCTTTCTTGCCTTCCCTTCTCTAGTTGAAGAAAAGTTTTCTGTTT  
JMFS011D07+           TCGTCAGAACGTGTCTTTCTTGCCTTCCCTTCTCTAGTTGAAGAAAAGTTTTCTGTTTTC
                      ____________________________________________________________
consensus             TCGTCAGAACGTGTCTTTCTTGCCTTCCCTTCTCTAGTTGAAGAAAAGTTTTCTGTTTTC