Contig 008967:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN040E12Sequence614008967 (3)ref|XP_007039480.1|8e-16PLATZ transcription factor family protein isoform 2 [Theobroma cacao] gb|EOY239
JMSF043G09Sequence825008967 (3)ref|XP_009795307.1|384PREDICTED: uncharacterized protein LOC104242030 [Nicotiana sylvestris]203008967 (3)

Alignment

This contig is upended


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JMSF043G09-                        GATACTCCCCAAAATCGCAATTTCAAAACCTTTTCTCTTCTCCCTCC
                      ____________________________________________________________
consensus                          GATACTCCCCAAAATCGCAATTTCAAAACCTTTTCTCTTCTCCCTCC
 
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JMSF043G09-           ATTCCAACAAGCTGGCGATTGATAATCAAGACACCACTATCAAGCCCAAGAACAGGCGAA
                      ____________________________________________________________
consensus             ATTCCAACAAGCTGGCGATTGATAATCAAGACACCACTATCAAGCCCAAGAACAGGCGAA
 
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JMSF043G09-           TCATGGGAGCTGGAGGGCCTGATGAAGATGAGTATAGATGGCCGCCATGGCTGAAACCCA
                      ____________________________________________________________
consensus             TCATGGGAGCTGGAGGGCCTGATGAAGATGAGTATAGATGGCCGCCATGGCTGAAACCCA
 
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JMSF043G09-           TGCTCAAAGAACGCTTCTTTGTTCAATGCAATCTCCACGCCGATTCCCACAAGAGCGAAT
                      ____________________________________________________________
consensus             TGCTCAAAGAACGCTTCTTTGTTCAATGCAATCTCCACGCCGATTCCCACAAGAGCGAAT
 
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JMSF043G09-           GCAATATGTACTGCCTTGACTGTATGAATGGCGCTCTCTGCTCTCTCTGTTTGCCCAATC
                      ____________________________________________________________
consensus             GCAATATGTACTGCCTTGACTGTATGAATGGCGCTCTCTGCTCTCTCTGTTTGCCCAATC
 
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JMSF043G09-           ACCCTCACCACCGCGCCATTCAGATTAGGAGATCATCGTACCATGATGTGATCAGAGTTA
                      ____________________________________________________________
consensus             ACCCTCACCACCGCGCCATTCAGATTAGGAGATCATCGTACCATGATGTGATCAGAGTTA
 
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JMSF043G09-           ACGAGATTCAGAAGTTCCTGGACATCTCCGCCGTCCAGACCTACATTATCAACAGCGCCA
                      ____________________________________________________________
consensus             ACGAGATTCAGAAGTTCCTGGACATCTCCGCCGTCCAGACCTACATTATCAACAGCGCCA
 
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JMSF043G09-           AAGTTGTGTTCTTGAACGAAAGGCCCCAACCCAGACCCGGCAAGGGCGTCACCAATACTT
                      ____________________________________________________________
consensus             AAGTTGTGTTCTTGAACGAAAGGCCCCAACCCAGACCCGGCAAGGGCGTCACCAATACTT
 
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JMSF043G09-           GTGAAGTTTGCCGCCGCAGCCTTCTTGATTCTTTCCGTTTCTGCTCTTTGGGCTGCAAGA
                      ____________________________________________________________
consensus             GTGAAGTTTGCCGCCGCAGCCTTCTTGATTCTTTCCGTTTCTGCTCTTTGGGCTGCAAGA
 
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JMSF043G09-           TTGTCGGGACATCGAAGAATTTCGTGAGAAACCCGAAACGGTTGCCGGAGAAGAAGAGGA
JMFN040E12+                                                        CGGAGAAGAAGAGGA
                      ____________________________________________________________
consensus             TTGTCGGGACATCGAAGAATTTCGTGAGAAACCCGAAACGGTTGCCGGAGAAGAAGAGGA
 
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JMSF043G09-           CGGCGCCGCCGCCGTCGGACTCGGAGGATTCCTCGTATTGCAGCCATAGCCATGGGCGGG
JMFN040E12+           CGGCGCCGCCGCCGTCGGACTCGGAGGATTCCTCGTATTGCAGCCATAGCCATGGGCGGG
                      ____________________________________________________________
consensus             CGGCGCCGCCGCCGTCGGACTCGGAGGATTCCTCGTATTGCAGCCATAGCCATGGGCGGG
 
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JMSF043G09-           TGAGCAGAAAGGTGCAGAGCTTCACGCCGTCAACGCCGCCGCCAACTTGCGTTAATTACA
JMFN040E12+           TGAGCAGAAAGGTGCAGAGCTTCACGCCGTCAACGCCGCCGCCAACTTGCGTTAATTACA
                      ____________________________________________________________
consensus             TGAGCAGAAAGGTGCAGAGCTTCACGCCGTCAACGCCGCCGCCAACTTGCGTTAATTACA
 
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JMSF043G09-           AAACTGCCAAGCGAAGAAAGGGAATTCCACATAGAGCCCCAATGGGAGGGCTCATTATTG
JMFN040E12+           AAACTGCCAAGCGAAGAAAGGGAATTCCACATAGAGCCCCAATGGGAGGGCTCATTATTG
                      ____________________________________________________________
consensus             AAACTGCCAAGCGAAGAAAGGGAATTCCACATAGAGCCCCAATGGGAGGGCTCATTATTG
 
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JMSF043G09-           AATACTAGGCTTTTGCAGTTTTGCTCACAGGCCCTTCATCTTCTCCTAAATTACCCTA  
JMFN040E12+           AATACTAGGCTTTTGCAGTTTTGCTCACAGGCCCTTCATTTTCTCCTAAATTACCCTAGC
                      ____________________________________________________________
consensus             AATACTAGGCTTTTGCAGTTTTGCTCACAGGCCCTTCATTTTCTCCTAAATTACCCTAGC
 
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rJMSF043G09+                                                                     A
JMFN040E12+           TCACCCATAGCCATGTTGTTGTATGTATATAGTAGCCACTAATAGAAGAATGAATGTTAA
                      ____________________________________________________________
consensus             TCACCCATAGCCATGTTGTTGTATGTATATAGTAGCCACTAATAGAAGAATGAATGTTAA
 
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rJMSF043G09+          AAAAAAAAAAAAGTAGGGGCAGAAGTTGGAATAAGTAAATGTGGAAGGACTAAAGCCGCT
JMFN040E12+           AAAAAAAAAAAAGTAGGGGCAGAAGTTGGAATAAGTAAATGTGGAAGGACTAAAGCCGCT
                      ____________________________________________________________
consensus             AAAAAAAAAAAAGTAGGGGCAGAAGTTGGAATAAGTAAATGTGGAAGGACTAAAGCCGCT
 
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rJMSF043G09+          AAGTTAGAAGTTTGGCTTAGAAAATAAGCTATATATATATTACTATAATAATAATAATAG
JMFN040E12+           AAGTTAGAAGTTTGGCTTAGAAAATAAGCTATATATATATTACTATAATAATAATAATAG
                      ____________________________________________________________
consensus             AAGTTAGAAGTTTGGCTTAGAAAATAAGCTATATATATATTACTATAATAATAATAATAG
 
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rJMSF043G09+          TTTGATAATGAAATATGAGATACTAGAGTGGTTGTTTACACATATAAACAGGTTTTTGTG
JMFN040E12+           TTTGATAATGAAATATGAGATACTAGAGTGGTTGTTTACACATAT-AACAGGTTTTTGTG
                      ____________________________________________________________
consensus             TTTGATAATGAAATATGAGATACTAGAGTGGTTGTTTACACATATAAACAGGTTTTTGTG
 
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rJMSF043G09+          TGTATGAATGAAAAAT                                            
JMFN040E12+           TGTATGAATGAAAAATGTAAATATCGTTTTCTGTGTTTATATGCCGTAATGGAATATCAC
                      ____________________________________________________________
consensus             TGTATGAATGAAAAATGTAAATATCGTTTTCTGTGTTTATATGCCGTAATGGAATATCAC
 
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JMFN040E12+           TTTGTTATTTTTTTATXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTCTCTCTCTCTC
                      ____________________________________________________________
consensus             TTTGTTATTTTTTTATNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTCTCTCTCTCTC