| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF043G22 | Sequence | 639 | 014236 | dbj|BAB71048.1| | 2e-04 | unnamed protein product [Homo sapiens] gb|EAW99920.1| RAB1A, member RAS oncogene | 643 | 008964 (3) | ref|XP_006477111.1| | 2e-64 | PREDICTED: ras-related protein RABD2a-like [Citrus sinensis] gb|KDO57090.1| hypo |
| JMFN036J15 | Sequence | 557 | 008964 (3) | ref|NP_001233823.1| | 2e-48 | small GTP-binding protein [Solanum lycopersicum] gb|AAA80678.1| small GTP-bindin | |||||
| JMFN038H24 | Sequence | 638 | 008964 (3) | ref|XP_010919741.1| | 2e-121 | PREDICTED: GTP-binding protein YPTM2-like [Elaeis guineensis] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF043G22- A
____________________________________________________________
consensus A
. : . : . : . : . : . :
JMFN036J15+ GCCTTAAAAAGGAAAGCATGTGTCATTCACCAC
rJMFF043G22- CCCTGGAGAGTTTTTTTTTTTTTTTTGGCCTTAAAAAGGAAAGCATGTGTCATTCACCAC
____________________________________________________________
consensus CCCTGGAGAGTTTTTTTTTTTTTTTTGGCCTTAAAAAGGAAAGCATGTGTCATTCACCAC
. : . : . : . : . : . :
JMFN036J15+ TTGATTTTTATGAAAACAAATCACTAAAACAATGAGGGCAAATACTGCCTTGTAGCAATC
rJMFF043G22- TTGATTTTTATGAAAACAAATCACTAAAACAATGAGGGCAAATACTGCCTTGTAGCAATC
____________________________________________________________
consensus TTGATTTTTATGAAAACAAATCACTAAAACAATGAGGGCAAATACTGCCTTGTAGCAATC
. : . : . : . : . : . :
JMFN036J15+ ATCTTCTACACTTTTGTACAAAAGCTGTTTATAACTGAATAGTGGAAAGAATTGGTGTTT
rJMFF043G22- ATCTTCTACACTTTTGTACAAAAGCTGTTTATAACTGAATAGTGGAAAGAATTGGTGTTT
____________________________________________________________
consensus ATCTTCTACACTTTTGTACAAAAGCTGTTTATAACTGAATAGTGGAAAGAATTGGTGTTT
. : . : . : . : . : . :
JMFN036J15+ TAACAAAACGCGGGAATGAAAAAATATATATAAAGCAAACATGCAGAATAGTCTACTTCA
rJMFF043G22- TAACAAAACGCGGGAATGAAAAAATATATATAAAGCAAACATGCAGAATAGTCTACTTCA
____________________________________________________________
consensus TAACAAAACGCGGGAATGAAAAAATATATATAAAGCAAACATGCAGAATAGTCTACTTCA
. : . : . : . : . : . :
JMFN036J15+ TGTCAAACAACTAAGATTAATTTTACATGCCACATGAAGAGCATCTGAGCATATCCAGAA
rJMFF043G22- TGTCAAACAACTAAGATTAATTTTACATGCCACATGAAGAGCATCTGAGCATATCCAGAA
____________________________________________________________
consensus TGTCAAACAACTAAGATTAATTTTACATGCCACATGAAGAGCATCTGAGCATATCCAGAA
. : . : . : . : . : . :
JMFN036J15+ AATAGAATCTCCCTTTCAACTTGAGCAGCAACCAGAATTTTGGTTGACGGGCTGTCCTCG
rJMFF043G22- AATAGAATCTCCCTTTCAACTTGAGCAGCAACCAGAATTTTGGTTGACGGGCTGTCCTCG
____________________________________________________________
consensus AATAGAATCTCCCTTTCAACTTGAGCAGCAACCAGAATTTTGGTTGACGGGCTGTCCTCG
. : . : . : . : . : . :
JMFN036J15+ GATCTGCACAGTAGGAGGCCGTGCATTGCTTGAGGAGGGTTGAGTCGCCATTCTGTTTTT
rJMFF043G22- GATCTGCACAGTAGGAGGCCGTGCATTGCTTGAGGAGGGTTGAGTCGCCATTCTGTTTTT
____________________________________________________________
consensus GATCTGCACAGTAGGAGGCCGTGCATTGCTTGAGGAGGGTTGAGTCGCCATTCTGTTTTT
. : . : . : . : . : . :
JMFN036J15+ TATTGAACCAGTCATGGCCATGAAAGCCTGCTCCACATTGGTTGCATTTTTTGCACTTGT
rJMFF043G22- TATTGAACCAGTCATGGCCATGAAAGCCTGCTCCACATTGGTTGCATTTTTTGCACTTGT
JMFN038H24+ GTCATGGCCATGAAAGCCTGCTCCACATTGGTTGCATTTTTTGCACTTGT
____________________________________________________________
consensus TATTGAACCAGTCATGGCCATGAAAGCCTGCTCCACATTGGTTGCATTTTTTGCACTTGT
. : . : . : . : . : . :
JMFN036J15+ CTCCAGGAATGGAATTCCAATCTCATCAGCAAAAGCCTTGGCTGTCTCATAGGACACAAC
rJMFF043G22- CTCCAGGAATGGAATTCCAATCTCATCAGCAAAAGCCTTGGCTGTCTCATAGGACACAAC
JMFN038H24+ CTCCAGGAATGGAATTCCAATCTCATCAGCAAAAGCCTTGGCTGTCTCATAGGACACAAC
____________________________________________________________
consensus CTCCAGGAATGGAATTCCAATCTCATCAGCAAAAGCCTTGGCTGTCTCATAGGACACAAC
. : . : . : . : . : . :
JMFN036J15+ CTTCTGTGCCGTTAGGTCACACTTATTCCCGACAAGAAGCTTGT
rJMFF043G22- CTTCTGTGCCGTTAGGTCACACTTATTCCCGACAAGAAGCTTGTTTACATTCTCACTTGC
JMFN038H24+ CTTCTGTGCCGTTAGGTCACACTTATTCCCGACAAGAAGCTTGTTTACATTCTCACTTGC
____________________________________________________________
consensus CTTCTGTGCCGTTAGGTCACACTTATTCCCGACAAGAAGCTTGTTTACATTCTCACTTGC
. : . : . : . : . : . :
rJMFF043G22- ATATCGATCAATTTCATTCAACCATTGCTTGACATTGTTGAA
JMFN038H24+ ATATCGATCAATTTCATTCAACCATTGCTTGACATTGTTGAAACTATCTTGATCAGTGAC
____________________________________________________________
consensus ATATCGATCAATTTCATTCAACCATTGCTTGACATTGTTGAAACTATCTTGATCAGTGAC
. : . : . : . : . : . :
JMFN038H24+ ATCATAAACCACAATTATGCCATGAGCCCCACGATAGTAACTGCTGGTAATTGTCCTAAA
____________________________________________________________
consensus ATCATAAACCACAATTATGCCATGAGCCCCACGATAGTAACTGCTGGTAATTGTCCTAAA
. : . : . : . : . : . :
JMFN038H24+ CCGTTCTTGACCAGCAGTGTCCCAAATTTGGAGTTTAATGGTTTTCCCCTCCTGTTCCAC
____________________________________________________________
consensus CCGTTCTTGACCAGCAGTGTCCCAAATTTGGAGTTTAATGGTTTTCCCCTCCTGTTCCAC
. : . : . : . : . : . :
JMFN038H24+ TGTCCGGATTTTAAAATCTACTCCAATGGTACTGATGTAACTTTCAAGATACGAGTCATC
____________________________________________________________
consensus TGTCCGGATTTTAAAATCTACTCCAATGGTACTGATGTAACTTTCAAGATACGAGTCATC
. : . : . : . : . : . :
JMFN038H24+ AGCAAACCTCAGAAGAAGACAGGATTTTCCAACACCAGAATCTCCAATCAGCAAAAGCTT
____________________________________________________________
consensus AGCAAACCTCAGAAGAAGACAGGATTTTCCAACACCAGAATCTCCAATCAGCAAAAGCTT
. : . : . : . : . : . :
JMFN038H24+ AAAAAGATAGTCATATTCAGGATTCATAGCTGCAGCACGGCTTGAGATCGATGAGGCTGA
____________________________________________________________
consensus AAAAAGATAGTCATATTCAGGATTCATAGCTGCAGCACGGCTTGAGATCGATGAGGCTGA
. : . : . : . : . : . :
JMFN038H24+ ACGGAAATACGTAGAAATTCGGCGGAATTTCCTGTTTCCCGGCAAGAATTAATCAGGCTT
____________________________________________________________
consensus ACGGAAATACGTAGAAATTCGGCGGAATTTCCTGTTTCCCGGCAAGAATTAATCAGGCTT