Contig 008960:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN035K11Sequence608008960 (2)ref|XP_008376947.1|3e-102PREDICTED: RNA polymerase sigma factor sigA-like isoform X2 [Malus domestica]
JMSF032H08Sequence631015789ref|XP_004235299.1|4e-32PREDICTED: RNA polymerase sigma factor sigA [Solanum lycopersicum]748008960 (2)ref|XP_010662046.1|1e-90PREDICTED: RNA polymerase sigma factor sigA isoform X2 [Vitis vinifera]

Alignment

This contig is upended


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rJMSF032H08-                  TGACATACAAATATACAATACGGCTATGTTCGCTCCTGACTGTCGGGAATTT
                      ____________________________________________________________
consensus                     TGACATACAAATATACAATACGGCTATGTTCGCTCCTGACTGTCGGGAATTT
 
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rJMSF032H08-          AAAACGCGTTTGCTACATCTGACAGACAACTCTATTAGGATTTATATTAGTGTTTCTGTA
                      ____________________________________________________________
consensus             AAAACGCGTTTGCTACATCTGACAGACAACTCTATTAGGATTTATATTAGTGTTTCTGTA
 
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rJMSF032H08-          AAATCTTCCGAGAAAGAAAATCTCTCAACTGTCTGGAAAGTGGAATATATGATGGCTCGA
                      ____________________________________________________________
consensus             AAATCTTCCGAGAAAGAAAATCTCTCAACTGTCTGGAAAGTGGAATATATGATGGCTCGA
 
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rJMSF032H08-          TTTGTGTATTTACAGTGAATTTTACCATTGCCAGAAACGTTCCAAAACGTCATTGTTTCA
                      ____________________________________________________________
consensus             TTTGTGTATTTACAGTGAATTTTACCATTGCCAGAAACGTTCCAAAACGTCATTGTTTCA
 
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rJMSF032H08-          CCAGCATGGCTTTCAGTCTGTTTTTCCTTGCAGCGTGTTTTAGTTTCTCGAATGCCACCA
                      ____________________________________________________________
consensus             CCAGCATGGCTTTCAGTCTGTTTTTCCTTGCAGCGTGTTTTAGTTTCTCGAATGCCACCA
 
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rJMSF032H08-          GCCCGACCTGCCTAACTCTCTCTCTCGATAATCCTATCCTTTTACTAATATCTTCCCAGG
                      ____________________________________________________________
consensus             GCCCGACCTGCCTAACTCTCTCTCTCGATAATCCTATCCTTTTACTAATATCTTCCCAGG
 
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rJMSF032H08-          TAAGACACTCATTGCCCAGCCCATGGTATAATCGGATAATCTCCCTCTCCCGCTCCTTTA
                      ____________________________________________________________
consensus             TAAGACACTCATTGCCCAGCCCATGGTATAATCGGATAATCTCCCTCTCCCGCTCCTTTA
 
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rJMSF032H08-          GTGTTGTGTGAATGAGGTTGTTTACTTCATCCTTGAGTGCACACTCATCAACTCTGTGCC
                      ____________________________________________________________
consensus             GTGTTGTGTGAATGAGGTTGTTTACTTCATCCTTGAGTGCACACTCATCAACTCTGTGCC
 
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rJMSF032H08-          ATGGGTTGTTTTCCAAGTGACTGTCAGCAATATAACTATGAAGTGATTCTCCTGGAAGGC
JMFN035K11+                                                               TGGAAGGC
                      ____________________________________________________________
consensus             ATGGGTTGTTTTCCAAGTGACTGTCAGCAATATAACTATGAAGTGATTCTCCTGGAAGGC
 
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rJMSF032H08-          CATCTATAGAAGGGAAAGCTTCCCTGTCAAGAGAGAAAACCTTGCTGACTGCCTCAGTTG
JMFN035K11+           CATCTATAGAAGGGAAAGCTTCCCTGTCAAGAGAGAAAACCTTGCTGACTGCCTCAGTTG
                      ____________________________________________________________
consensus             CATCTATAGAAGGGAAAGCTTCCCTGTCAAGAGAGAAAACCTTGCTGACTGCCTCAGTTG
 
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rJMSF032H08-          CATTCGTGACTTTCTTTTTCGAAATGTTAAGTGATTCAGCAATTCTATCAATTGATGGAG
JMFN035K11+           CATTCGTGACTTTCTTTTTCGAAATGTTAAGTGATTCAGCAATTCTATCAATTGATGGAG
                      ____________________________________________________________
consensus             CATTCGTGACTTTCTTTTTCGAAATGTTAAGTGATTCAGCAATTCTATCAATTGATGGAG
 
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rJMSF032H08-          TTATCCCCTTATCTTTAAGCTTGGTTTCTGCATTCCGGATTAGGCTCAATCTTCCATGAA
JMFN035K11+           TTATCCCCTTATCTTTAAGCTTGGTTTCTGCATTCCGGATTAGGCTCAATCTTCCATGAA
                      ____________________________________________________________
consensus             TTATCCCCTTATCTTTAAGCTTGGTTTCTGCATTCCGGATTAGGCTCAATCTTCCATGAA
 
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rJMSF032H08-          GATGTTTTGGCAATCTTAACATGCTTGAGTTC                            
JMFN035K11+           GATGTTTTGGCAATCTTAACATGCTTGAGTTCTTAACTAATGCCCTGGAGATACCCTGAC
                      ____________________________________________________________
consensus             GATGTTTTGGCAATCTTAACATGCTTGAGTTCTTAACTAATGCCCTGGAGATACCCTGAC
 
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JMFN035K11+           GAATCCACCAATACACATAAGTTGATAGTTTATATCCTTTTGAAGGATCAAATTTTTCTA
                      ____________________________________________________________
consensus             GAATCCACCAATACACATAAGTTGATAGTTTATATCCTTTTGAAGGATCAAATTTTTCTA
 
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JMFN035K11+           TTCCACGGAGTAGTCCAACAAGGCCACCCTGAATAAGGTCAGCCATTTCAGCACCCATGT
                      ____________________________________________________________
consensus             TTCCACGGAGTAGTCCAACAAGGCCACCCTGAATAAGGTCAGCCATTTCAGCACCCATGT
 
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JMFN035K11+           TATCATATCTTTGTGCAATTGACATGACAAGACGAACATTACTCATTGCCAGCTTTTCTC
                      ____________________________________________________________
consensus             TATCATATCTTTGTGCAATTGACATGACAAGACGAACATTACTCATTGCCAGCTTTTCTC
 
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JMFN035K11+           GAGCCAACGAACACTCAATCATCGTTAATTTTAAATCAGTACGAGAAATCCTCAAGGAAA
                      ____________________________________________________________
consensus             GAGCCAACGAACACTCAATCATCGTTAATTTTAAATCAGTACGAGAAATCCTCAAGGAAA
 
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JMFN035K11+           CTGCAAGTTGCTCCTCTGAAGGATCACATCCCAGTCTTTCCTTCAGCCTGAACTTTCCGG
                      ____________________________________________________________
consensus             CTGCAAGTTGCTCCTCTGAAGGATCACATCCCAGTCTTTCCTTCAGCCTGAACTTTCCGG
 
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JMFN035K11+           CGACGATTGACGACAGAAGAACGATGTGCGAGTGCCAAGTGTGAGCTCCAAATCCAATGC
                      ____________________________________________________________
consensus             CGACGATTGACGACAGAAGAACGATGTGCGAGTGCCAAGTGTGAGCTCCAAATCCAATGC