Contig 008956:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN034J19Sequence629008956 (3)gb|KHG03863.1|2e-4039S ribosomal L41-A, mitochondrial [Gossypium arboreum] gb|KJB64218.1| hypotheti
JMFN043J08Sequence620008956 (3)gb|KHG03863.1|2e-4039S ribosomal L41-A, mitochondrial [Gossypium arboreum] gb|KJB64218.1| hypotheti
JMFN046F17Sequence566008956 (3)gb|KHG03863.1|1e-4039S ribosomal L41-A, mitochondrial [Gossypium arboreum] gb|KJB64218.1| hypotheti

Alignment

This contig is upended


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JMFN043J08+                         CAACCCGGACAAAACACGAAGCGGGGTTGGTGAGTGAAGAAACATC
JMFN034J19+                                          GAAGCGGGGTTGGTGAGTGAAGAAACATC
                      ____________________________________________________________
consensus                           CAACCCGGACAAAACACGAAGCGGGGTTGGTGAGTGAAGAAACATC
 
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JMFN043J08+           AAACATGTAGGGATCAAGTAATCTAATGTATTAGGGGAATGCATTCAGAAAATATGGCGA
JMFN046F17+                                       TATTAGGGGAATGCATTCAGAAAATATGGCGA
JMFN034J19+           AAACATGTAGGGATCAAGTAATCTAATGTATTAGGGGAATGCATTCAGAAAATATGGCGA
                      ____________________________________________________________
consensus             AAACATGTAGGGATCAAGTAATCTAATGTATTAGGGGAATGCATTCAGAAAATATGGCGA
 
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JMFN043J08+           GAGTGTACGATGAAATCTTTCAGAAGAAAGAGCAAAATGAAGCGAAAGTATGAATTGTGT
JMFN046F17+           GAGTGTACGATGAAATCTTTCAGAAGAAAGAGCAAAATGAAGCGAAAGTATGAATTGTGT
JMFN034J19+           GAGTGTACGATGAAATCTTTCAGAAGAAAGAGCAAAATGAAGCGAAAGTATGAATTGTGT
                      ____________________________________________________________
consensus             GAGTGTACGATGAAATCTTTCAGAAGAAAGAGCAAAATGAAGCGAAAGTATGAATTGTGT
 
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JMFN043J08+           ACTTCCTACAATCCTACTGAGATATTATTTAGCAGAATCGGCAGCCTCTGCTGTTTTGGC
JMFN046F17+           ACTTCCTACAATCCTACTGAGATATTATTTAGCAGAATCGGCAGCCTCTGCTGTTTTGGC
JMFN034J19+           ACTTCCTACAATCCTACTGAGATATTATTTAGCAGAATCGGCAGCCTCTGCTGTTTTGGC
                      ____________________________________________________________
consensus             ACTTCCTACAATCCTACTGAGATATTATTTAGCAGAATCGGCAGCCTCTGCTGTTTTGGC
 
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JMFN043J08+           TTCTGTTGGGCACTGCGATACGTATGGCTTTAGCTTGAAACCGGTTAAATCTGGAACCAC
JMFN046F17+           TTCTGTTGGGCACTGCGATACGTATGGCTTTAGCTTGAAACCGGTTAAATCTGGAACCAC
JMFN034J19+           TTCTGTTGGGCACTGCGATACGTATGGCTTTAGCTTGAAACCGGTTAAATCTGGAACCAC
                      ____________________________________________________________
consensus             TTCTGTTGGGCACTGCGATACGTATGGCTTTAGCTTGAAACCGGTTAAATCTGGAACCAC
 
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JMFN043J08+           ATAATTAGGAAGCTTTTCTGGAACCACGACATAACCGCCTTTGCGAGTGTGGAAGCCAGT
JMFN046F17+           ATAATTAGGAAGCTTTTCTGGAACCACGACATAACCGCCTTTGCGAGTGTGGAAGCCAGT
JMFN034J19+           ATAATTAGGAAGCTTTTCTGGAACCACGACATAACCGCCTTTGCGAGTGTGGAAGCCAGT
                      ____________________________________________________________
consensus             ATAATTAGGAAGCTTTTCTGGAACCACGACATAACCGCCTTTGCGAGTGTGGAAGCCAGT
 
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JMFN043J08+           GGGTATGCAATTCTTGCCCTTGTAGAAACCCCTCGGACCACGTTTGGAAGTGAGAATTTC
JMFN046F17+           GGGTATGCAATTCTTGCCCTTGTAGAAACCCCTCGGACCACGTTTGGAAGTGAGAATTTC
JMFN034J19+           GGGTATGCAATTCTTGCCCTTGTAGAAACCCCTCGGACCACGTTTGGAAGTGAGAATTTC
                      ____________________________________________________________
consensus             GGGTATGCAATTCTTGCCCTTGTAGAAACCCCTCGGACCACGTTTGGAAGTGAGAATTTC
 
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JMFN043J08+           GAGAGAAGATGTTCGCTTTCTTCTGAATGACCTTGCAAGTCCAAGCAATAGCCCCAGCGC
JMFN046F17+           GAGAGAAGATGTTCGCTTTCTTCTGAATGACCTTGCAAGTCCAAGCAATAGCCCCAGCGC
JMFN034J19+           GAGAGAAGATGTTCGCTTTCTTCTGAATGACCTTGCAAGTCCAAGCAATAGCCCCAGCGC
                      ____________________________________________________________
consensus             GAGAGAAGATGTTCGCTTTCTTCTGAATGACCTTGCAAGTCCAAGCAATAGCCCCAGCGC
 
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JMFN043J08+           CATTTTCTTCTTCTTGTTTCACAAAGAACCAGCGTAGAAATCTTCAAAGTTCAAACAATG
JMFN046F17+           CATTTTCTTCTTCTTGTTTCACAAAGAACCAGCGTAGAAATCTTCAAAGTTCAAACAATG
JMFN034J19+           CATTTTCTTCTTCTTGTTTCACAAAGAACCAGCGTAGAAATCTTCAAAGTTCAAACAATG
                      ____________________________________________________________
consensus             CATTTTCTTCTTCTTGTTTCACAAAGAACCAGCGTAGAAATCTTCAAAGTTCAAACAATG
 
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JMFN043J08+           GCGAGAACGGAAGCAGGGCAGGTGATCGGCGGGCTCGGCGCTGTCGCAGGGGAGGGGAGG
JMFN046F17+           GCGAGAACGGAAGCAGGGCAGGTGATCGGCGGGCTCGGCGCTGTCGCAGGGGAGGGGAGG
JMFN034J19+           GCGAGAACGGAAGCAGGGCAGGTGATCGGCGGGCTCGGCGCTGTCGCAGGGGAGGGGAGG
                      ____________________________________________________________
consensus             GCGAGAACGGAAGCAGGGCAGGTGATCGGCGGGCTCGGCGCTGTCGCAGGGGAGGGGAGG
 
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JMFN043J08+           AGCAGTGGATTGTGGAGGCGCTGTGGTGATTTTG                          
JMFN046F17+           AGCAGTGGATTGTGGAGGCGCTGTGGTGATTTTGTCTAGGGAGCGCTGGTTCGG      
JMFN034J19+           AGCAGTGGATTGTGGAGGCGCTGTGGTGATTTTGTCTAGGGAGCGCTGGTTCGGCTGGAG
                      ____________________________________________________________
consensus             AGCAGTGGATTGTGGAGGCGCTGTGGTGATTTTGTCTAGGGAGCGCTGGTTCGGCTGGAG