Contig 008954:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN016L18Sequence558008954 (3)gb|AIS71915.1|7e-14hypothetical protein [Nicotiana tabacum]
JMFN017C16Sequence497008954 (3)gb|AIS71915.1|1e-13hypothetical protein [Nicotiana tabacum]
JMFN034D16Sequence624008954 (3)gb|AIS71915.1|3e-20hypothetical protein [Nicotiana tabacum]

Alignment

This contig is upended


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JMFN034D16+                                               TGCAGTAAAGGCAAAGGCTTGGCC
                      ____________________________________________________________
consensus                                                 TGCAGTAAAGGCAAAGGCTTGGCC
 
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JMFN034D16+           ACCAGTTGAAAAGGTACCCTTTTCCATTAAAATTTTTCTGAATCCTAAACCAGTTGCCAA
                      ____________________________________________________________
consensus             ACCAGTTGAAAAGGTACCCTTTTCCATTAAAATTTTTCTGAATCCTAAACCAGTTGCCAA
 
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JMFN016L18+                             CTATAACGCCTCCGGTCACTATTGCCGTCTCATCATTAAGCT
JMFN017C16+                             CTATAACGCCTCCGGTCACTATTGCCGTCTCATCATTAAGCT
JMFN034D16+           GATCACCTTTCACCACGCCTATAACGCCTCCGGTCACTATTGCCGTCTCATCATTAAGCT
                      ____________________________________________________________
consensus             GATCACCTTTCACCACGCCTATAACGCCTCCGGTCACTATTGCCGTCTCATCATTAAGCT
 
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JMFN016L18+           TCCAAACGTTCTCCTTAGCGCAGGGATCTGATGGGTCCGGCGAGTCGATGGCCACGTTCA
JMFN017C16+           TCCAAACGTTCTCCTTAGCGCAGGGATCTGATGGGTCCGGCGAGTCGAAGGCCACGTTCA
JMFN034D16+           TCCAAACGTTCTCCTTAGCGCAGGGATCTGATGGGTCCGGCGAGTCGAAGGCCACGTTCA
                      ____________________________________________________________
consensus             TCCAAACGTTCTCCTTAGCGCAGGGATCTGATGGGTCCGGCGAGTCGAAGGCCACGTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016L18+           GTGGGTACTGCGATATGATGACGTCGTCGTCGGTGGCGGCGGCGGAGCGTGAAGCCTCGG
JMFN017C16+           GTGGGTACTGCGATATGATGACGTCGTCGTCGGTGGCGGCGGCGGAGCGTGAAGCCTCGG
JMFN034D16+           GTGGGTACTGCGATATGATGACGTCGTCGTCGGTGGCGGCGGCGGAGCGTGAAGCCTCGG
                      ____________________________________________________________
consensus             GTGGGTACTGCGATATGATGACGTCGTCGTCGGTGGCGGCGGCGGAGCGTGAAGCCTCGG
 
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JMFN016L18+           CCTCGCGCTTTAGAGGGTAGAAAGTTAAAGGAAGACCCACGGCGGGAGGTTGGTGGCCGG
JMFN017C16+           CCTCGCGCTTTAGAGGGTAGAAAGTTAAAGGAAGACCCACGGCGGGAGGTTGGTGGCCGG
JMFN034D16+           CCTCGCGCTTTAGAGGGTAGAAAGTTAAAGGAAGACCCACGGCGGGAGGTTGGTGGCCGG
                      ____________________________________________________________
consensus             CCTCGCGCTTTAGAGGGTAGAAAGTTAAAGGAAGACCCACGGCGGGAGGTTGGTGGCCGG
 
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JMFN016L18+           CTAATGTGACGTTTATTACTACGTCGGTGGGGCAGGCGGAGGGGTTTCCTGTGTCCGGGT
JMFN017C16+           CTAATGTGACGTTTATTACTACGTCGGTGGGGCAGGCGGAGGGGTTTCCTGTGTCCGGGT
JMFN034D16+           CTAATGTGACGTTTATTACTACGTCGGTGGGGCAGGCGGAGGGGTTTCCTGTGTCCGGGT
                      ____________________________________________________________
consensus             CTAATGTGACGTTTATTACTACGTCGGTGGGGCAGGCGGAGGGGTTTCCTGTGTCCGGGT
 
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JMFN016L18+           TAGCCACGCTTATGCCGCCTTCCACGCCGATGAGGGCTGGGATGGCGTAGTATTTGGCTC
JMFN017C16+           TAGCCACGCTTATGCCGCCTTCCACGCCGATGAGGGCTGGGATGGCGTAGTATTTGGCTC
JMFN034D16+           TAGCCACGCTTATGCCGCCTTCCACGCCGATGAGGGCTGGGATGGCGTAGTATTTGGCTC
                      ____________________________________________________________
consensus             TAGCCACGCTTATGCCGCCTTCCACGCCGATGAGGGCTGGGATGGCGTAGTATTTGGCTC
 
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JMFN016L18+           CGGCGACTACTGGGTTGCCGGCCGTGTCTAAGATGGCGTTGTCGGGTACGTCGGCCTTTG
JMFN017C16+           CGGCGACTACTGGGTTGCCGGCCGTGTCTAAGATGGCGTTGTCGGGTACGTCGGCCTTTG
JMFN034D16+           CGGCGACTACTGGGTTGCCGGCCGTGTCTAAGATGGCGTTGTCGGGTACGTCGGCCTTTG
                      ____________________________________________________________
consensus             CGGCGACTACTGGGTTGCCGGCCGTGTCTAAGATGGCGTTGTCGGGTACGTCGGCCTTTG
 
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JMFN016L18+           TGGGGAGGCGGATGAGTGGAGGAAGGCCGCCGGAGATGGCCAGCGGAAGGAAAGAAATGG
JMFN017C16+           TGGGGAGGCGGATGAGTGGAGGAAGGCCG                               
JMFN034D16+           TGGGGAGGCGGATGAGTGGAGGAAGGCCGCCGGAGATGGCCAGCGGAAGGAAAGAAATGG
                      ____________________________________________________________
consensus             TGGGGAGGCGGATGAGTGGAGGAAGGCCGCCGGAGATGGCCAGCGGAAGGAAAGAAATGG
 
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JMFN016L18+           C                                                           
JMFN034D16+           CGGAGAGAACCAAAAGGATTATTGCTGTCTTCATCTTCAGAGCAGAGATAGATAGATAAA
                      ____________________________________________________________
consensus             CGGAGAGAACCAAAAGGATTATTGCTGTCTTCATCTTCAGAGCAGAGATAGATAGATAAA