Contig 008942:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN018P01Sequence622008942 (2)
JMFN043B16Sequence502008942 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043B16-                                                                      A
                      ____________________________________________________________
consensus                                                                        A
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043B16-           GAACTAGTCTCGAGXXXXXXXXXXXXXXXXXXATCCGAATGAAATTATGAATTCGAAAGC
                      ____________________________________________________________
consensus             GAACTAGTCTCGAGNNNNNNNNNNNNNNNNNNATCCGAATGAAATTATGAATTCGAAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043B16-           AAACAGCTCAATACAAAAAGCTCCAATAATCTCAAAGAATCAAAGTAAATAAATGCATAT
                      ____________________________________________________________
consensus             AAACAGCTCAATACAAAAAGCTCCAATAATCTCAAAGAATCAAAGTAAATAAATGCATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043B16-           AAAATGCAGATCAAATAGATGTAAGATAGGCCGGCCTGATGGCAACTCCATCCGCACATA
JMFN018P01+                                                GATGGCAACTCCATCCGCACATA
                      ____________________________________________________________
consensus             AAAATGCAGATCAAATAGATGTAAGATAGGCCGGCCTGATGGCAACTCCATCCGCACATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043B16-           ATATATCTAAAGTAGCAGCAAATTCATGGCGCCAAACGCCGCCACCATGCTCGCCGCCAT
JMFN018P01+           ATATATCT-AAGTAGCAGCAAATTCATGGCGCCAAACGCCGCCACCATGCTCGCCGCCAT
                      ____________________________________________________________
consensus             ATATATCTAAAGTAGCAGCAAATTCATGGCGCCAAACGCCGCCACCATGCTCGCCGCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043B16-           CTTCATCACCGTCCTAATGCTCTCTGCTCCACTCTGATCGGTGGCCGATGGAGCAGGAGA
JMFN018P01+           CTTCATCACCGTCCTAATGCTCTCTGCTACACTCTGATCGGTGGCCGATGGAGCAGGAGA
                      ____________________________________________________________
consensus             CTTCATCACCGTCCTAATGCTCTCTGCTCCACTCTGATCGGTGGCCGATGGAGCAGGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043B16-           GAGAGATCCAAGGCTCGGGGCCGGAGCTCCGGACGGGGGTAATGGGGAACTGAATGTGGA
JMFN018P01+           GAGAGATCCAAGGCTCGGGGCCGGAGCTCCGGACGGGGGTAATGGGGAACTGAATGTGGA
                      ____________________________________________________________
consensus             GAGAGATCCAAGGCTCGGGGCCGGAGCTCCGGACGGGGGTAATGGGGAACTGAATGTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043B16-           AGGCGACGGTGCCGGACTCTTCTTGGGCTTCTTAAGGCTGGGAGCCGGAGCCGGAGATGC
JMFN018P01+           AGGCGACGGTGCCGGACTCTTCTTGGGCTTCTTAAGGCTGGGAGCCGGAGCCGGAGATGC
                      ____________________________________________________________
consensus             AGGCGACGGTGCCGGACTCTTCTTGGGCTTCTTAAGGCTGGGAGCCGGAGCCGGAGATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043B16-           GAGAGGGGAAGGTGTAGGAGCTGCCGGAGGTGGAGGGGAAGGAGTTGGCGGCGGTGGAGA
JMFN018P01+           GAGAGGGGAAGGTGTAGGAGCTGCCGGAGGTGGAGGGGAAGGAGTTGGCGGCGGTGGAGA
                      ____________________________________________________________
consensus             GAGAGGGGAAGGTGTAGGAGCTGCCGGAGGTGGAGGGGAAGGAGTTGGCGGCGGTGGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043B16-           TAGGGGAGACGGCGGGGGGCT                                       
JMFN018P01+           TAGGGGAGACGGCGGGGGGCTAGCGGGGGTTGGAGGAGGACTTGACGGCGGAGGGCTGGC
                      ____________________________________________________________
consensus             TAGGGGAGACGGCGGGGGGCTAGCGGGGGTTGGAGGAGGACTTGACGGCGGAGGGCTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN018P01+           AGGCGGTGTGGTGACTGGTGGGGGAGATGCCGGTGGAGTTGGCGGCGGTGAAGCTGGAGG
                      ____________________________________________________________
consensus             AGGCGGTGTGGTGACTGGTGGGGGAGATGCCGGTGGAGTTGGCGGCGGTGAAGCTGGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN018P01+           TGGTAGGTGTCGGCGGCGCAGGAGTTGACGTGGGAGGAGCAGGCGGCGCTTGGCCAACAA
                      ____________________________________________________________
consensus             TGGTAGGTGTCGGCGGCGCAGGAGTTGACGTGGGAGGAGCAGGCGGCGCTTGGCCAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN018P01+           CTCCGGCCACGATCAAGCACACAAATGCCACCACGGCAGCGCATTTCAAATCCATCATCA
                      ____________________________________________________________
consensus             CTCCGGCCACGATCAAGCACACAAATGCCACCACGGCAGCGCATTTCAAATCCATCATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN018P01+           CAATGTAATCAATCCAACGGCTCTAACTTTCTTATCTTTCTCGAAAACTCTCTCCGAGAG
                      ____________________________________________________________
consensus             CAATGTAATCAATCCAACGGCTCTAACTTTCTTATCTTTCTCGAAAACTCTCTCCGAGAG