Contig 008941:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016P18+                                                                GAGAATA
                      ____________________________________________________________
consensus                                                                  GAGAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016P18+           AAAATGAAAGAAGTTCCCATAAATAAGATGATATATATACCAATAATACAACATTACACC
JMFN018C15+                                                   CAATAATACAACATTACACC
                      ____________________________________________________________
consensus             AAAATGAAAGAAGTTCCCATAAATAAGATGATATATATACCAATAATACAACATTACACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016P18+           CAGAAATACTTATAGATGGCTGCAGGGTGGCTTAATTTATTTAAAAACTCAAATACAACA
JMFN018C15+           CAGAAATACTTATAGATGGCTGCAGGGTGGCTTAATTTATTTAAAAACTCAAATACAACA
                      ____________________________________________________________
consensus             CAGAAATACTTATAGATGGCTGCAGGGTGGCTTAATTTATTTAAAAACTCAAATACAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016P18+           AAATATATATATATATATATATATAAATATATATATATATATATATATATATATATATAT
JMFN042B13+           AAATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT
JMFS044D05+           AAATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT
JMFN018C15+           AAATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT
                      ____________________________________________________________
consensus             AAATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016P18+           TTAACACTTGGGAGTAGGCACACCACAAGCTGAAGCAACTTTTTTAGCATTGGGAGAGTT
JMFN042B13+           TTAACACTTGGGAGTAGGCACACCACAAGCTGAAGCAACTTTTTTAGCATTGGGAGAGTT
JMFS044D05+           TTAACACTTGGGAGTAGGCACACCACAAGCTGAAGCAACTTTTTTAGCATTGGGAGAGTT
JMFN018C15+           TTAACACTTGGGAGTAGGCACACCACAAGCTGAAGCAACTTTTTTAGCATTGGGAGAGTT
                      ____________________________________________________________
consensus             TTAACACTTGGGAGTAGGCACACCACAAGCTGAAGCAACTTTTTTAGCATTGGGAGAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016P18+           AACAAACTGTCTAAGGGTTGGATTTTTAAGGTATCCGCAAAGGCACGGCTTCTGCTCCTT
JMFN042B13+           AACAAACTGTCTAAGGGTTGGATTTTTAAGGTATCCGCAAAGGCACGGCTTCTGCTCCTT
JMFS044D05+           AACAAACTGTCTAAGGGTTGGATTTTTAAGGTATCCGCAAAGGCACGGCTTCTGCTCCTT
JMFN018C15+           AACAAACTGTCTAAGGGTTGGATTTTTAAGGTATCCGCAAAGGCACGGCTTCTGCTCCTT
                      ____________________________________________________________
consensus             AACAAACTGTCTAAGGGTTGGATTTTTAAGGTATCCGCAAAGGCACGGCTTCTGCTCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016P18+           CAGTTTACTGCAATATGCCGCCGACGGCGGCGTCCCCGATATGATTGCAGACGCGCATGG
JMFN042B13+           CAGTTTACTGCAACATGCCGCCGACGGCGGCGTCCCCGATATGATTGCAGACGCGCATGG
JMFS044D05+           CAGTTTACTGCAACATGCCGCCGACGGCGGCGTCCCCGATATGATTGCAGACGCGCATGG
JMFN018C15+           CAGTTTACTGCAACATGCCGCCGACGGCGGCGTCCCCGATATGATTGCAGACGCGCATGG
                      ____________________________________________________________
consensus             CAGTTTACTGCAACATGCCGCCGACGGCGGCGTCCCCGATATGATTGCAGACGCGCATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016P18+           GCTCAGCTCCGTCGCGCTGCACGTCACCGCCTCGCTCACCTCTAGTTTTCCGATAAGCAT
JMFN042B13+           GCTCAGCTCCGTCGCGCTGCACGTCACCGCCTCGCTCACCTCTAGTTTTCCGATAAGCAT
JMFS044D05+           GCTCAGCTCCGTCGCGCTGCACGTCACCGCCTCGCTCACCTCTAGTTTTCCGATAAGCAT
JMFN018C15+           GCTCAGCTCCGTCGCGCTGCACGTCACCGCCTCGCTCACCTCTAGTTTTCCGATAAGCAT
                      ____________________________________________________________
consensus             GCTCAGCTCCGTCGCGCTGCACGTCACCGCCTCGCTCACCTCTAGTTTTCCGATAAGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016P18+           CGCCGCCGCCATGATTATGTAGACCGCAACTAGTGTATGCCCCTTTCTCGCCATCTTCAA
JMFN042B13+           CGCCGCCGCCATGATTATGTAGACCGCAACTAGTGTATGCCCCTTTCTCGCCATCTTCAA
JMFS044D05+           CGCCGCCGCCATGATTATGTAGACCGCAACTAGTGTATGCCCCTTTCTC           
JMFN018C15+           CGCCGCCGCCATGATTATGTAGACCGCAACTAGTGTATGCCCCTTTCTCGCCATCTTCAA
                      ____________________________________________________________
consensus             CGCCGCCGCCATGATTATGTAGACCGCAACTAGTGTATGCCCCTTTCTCGCCATCTTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016P18+           GTGAAATGAAATAGGAGGGACTGAGGGATGGTATGGAGTGGAGTACTAGAGAAGTGGAGG
JMFN042B13+           GTGAAATGAAATAGGAGGGACTGAGGGATGGTATGGAGTGGAGTACTAGAGAAGTGGAGG
JMFN018C15+           GTGAAATGAAATAGGAGGGACTGAGGGATGGTATGGAGTGGAGTACTAGAGAAGTGGAGG
                      ____________________________________________________________
consensus             GTGAAATGAAATAGGAGGGACTGAGGGATGGTATGGAGTGGAGTACTAGAGAAGTGGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN016P18+           GTTAGAGGAGCTAAGATGTTTCTTTATTGTGT                            
JMFN042B13+           GTTAGAGGAGCTAAGATGTTTCTT                                    
JMFN018C15+           GTTAGAGGAGCTAAGATGTTTCTTTATTGTGTGGTGGTGGAGAGTGGAGTGAATGTTTTG
                      ____________________________________________________________
consensus             GTTAGAGGAGCTAAGATGTTTCTTTATTGTGTGGTGGTGGAGAGTGGAGTGAATGTTTTG