Contig 008938:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004L17Sequence748008938 (4)ref|XP_009597029.1|1e-83PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 16 [Nicot
JMFF018B14Sequence685008938 (4)ref|XP_009597029.1|4e-71PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 16 [Nicot
JMFN016J16Sequence580008938 (4)ref|XP_009762866.1|8e-45PREDICTED: brassinosteroid-regulated protein BRU1-like isoform X1 [Nicotiana sy
JMFN043K24Sequence596008938 (4)ref|XP_009597029.1|5e-83PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 16 [Nicot

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN043K24- TTTGTATGATAATGATAATAGGTGTGG
                      ____________________________________________________________
consensus TTTGTATGATAATGATAATAGGTGTGG
 
. : . : . : . : . : . :
JMFN043K24- TGGCGTGCAGCCTGGTAGGTGTGGCATTAGCCGTGCCCCCGCCCCCGCTTAACTTCAACA
                      ____________________________________________________________
consensus TGGCGTGCAGCCTGGTAGGTGTGGCATTAGCCGTGCCCCCGCCCCCGCTTAACTTCAACA
 
. : . : . : . : . : . :
JMFN043K24- ATGATGTCCAAATGTATTTTGGGAATCATCTTGGGCAAGTGCAAGACAACGGCAACACGA
                      ____________________________________________________________
consensus ATGATGTCCAAATGTATTTTGGGAATCATCTTGGGCAAGTGCAAGACAACGGCAACACGA
 
. : . : . : . : . : . :
JMFN043K24- TGGCCCTGAATCTTGACCAACAAACTGGTTTTGGTTTCAATACCAAAAATGAGTACCTGT
                      ____________________________________________________________
consensus TGGCCCTGAATCTTGACCAACAAACTGGTTTTGGTTTCAATACCAAAAATGAGTACCTGT
 
. : . : . : . : . : . :
JMFN043K24- TCGGCAGATTCGACATGCAAATGAAGTTAGTGAAAGGCTTCTCGGCTGGCACTGTCACCA
                      ____________________________________________________________
consensus TCGGCAGATTCGACATGCAAATGAAGTTAGTGAAAGGCTTCTCGGCTGGCACTGTCACCA
 
. : . : . : . : . : . :
JMFN043K24- CCTTCTATCTAACATCACCTATAGGACAAGCGCACGATGAAGTGGACTTTGAATTCTTAG
rJMFF004L17+ AGGACAAGCGCACGATGAAGTGGACTTTGAATTCTTAG
                      ____________________________________________________________
consensus CCTTCTATCTAACATCACCTATAGGACAAGCGCACGATGAAGTGGACTTTGAATTCTTAG
 
. : . : . : . : . : . :
JMFN043K24- GGAATGCTACTTTTCAGCCTTACACAGTCCATACCAATGTATTTGCTGATGGGAAAGGTG
rJMFF018B14+ ACAGTCCATACCAATGTATTTGCTGATGGGAAAGGTG
rJMFF004L17+ GGAATGCTACTTTTCAGCCTTACACAGTCCATACCAATGTATTTGCTGATGGGAAAGGTG
                      ____________________________________________________________
consensus GGAATGCTACTTTTCAGCCTTACACAGTCCATACCAATGTATTTGCTGATGGGAAAGGTG
 
. : . : . : . : . : . :
JMFN043K24- ACAGGGAGCAACAGTTCCATCTCTGGTTTGACCCAACAGCCGCATATCACGATTACACTA
rJMFF018B14+ ACAGGGAGCAACAGTTCCATCTCTGGTTTGACCCAACAGCCGCATATCACGATTACACTA
rJMFF004L17+ ACAGGGAGCAACAGTTCCATCTCTGGTTCGACCCAACAGCCGCATATCACGATTACACTA
                      ____________________________________________________________
consensus ACAGGGAGCAACAGTTCCATCTCTGGTTTGACCCAACAGCCGCATATCACGATTACACTA
 
. : . : . : . : . : . :
JMFN043K24- TTATCTGGAACTCACAAAGAATTGTTTGGTTGGTGGATAACGTTCCGATTAGAGTATACG
rJMFF018B14+ TTATCTGGAACTCACAAAGAATTGTTTGGTTGGTGGATAACGTTCCGATTAGAGTATACG
rJMFF004L17+ TTATCTGGAACTCACAAAGAATTGTTTGGTTGGTGGATAACGTTCCGATTAGAGTATACG
JMFN016J16- ATTGTTTGGTTGGTGGATAACGTTCCGATTAGAGTATACG
                      ____________________________________________________________
consensus TTATCTGGAACTCACAAAGAATTGTTTGGTTGGTGGATAACGTTCCGATTAGAGTATACG
 
. : . : . : . : . : . :
JMFN043K24- AGAATCACGAAAATGTTGGGGTTCCATTCCCAAAGAGCAAGCCCATGAAAGTATTCTGCA
rJMFF018B14+ AGAATCACGAAAATGTTGGGGTTCCATTCCCAAAGAGCAAGCCCATGAAAGTATTCTGCA
rJMFF004L17+ AGAATCACGAAAATGTTGGGGTTCCATTCCCAAAGAGCAAGCCCATGAAAGTATTCTGCA
JMFN016J16- AGAATCACGAAAATGTTGGGGTTCCATTCCCAAAGAGCAAGCCCATGAAAGTATTCTGCA
                      ____________________________________________________________
consensus AGAATCACGAAAATGTTGGGGTTCCATTCCCAAAGAGCAAGCCCATGAAAGTATTCTGCA
 
. : . : . : . : . : . :
JMFN043K24- GCTTGTGGGAAGCGTCTGATTGGGCAACC
rJMFF018B14+ GCTTGTGGGAAGCGTCTGATTGGGCAACCCAGGGAGGAGATGTGAAGGTAGATTGGTCAA
rJMFF004L17+ GCTTGTGGGAAGCGTCTGATTGGGCAACCCAGGGAGGAGATGTGAAGGTAGATTGGTCAA
JMFN016J16- GCTTGTGGGAAGCGTCTGATTGGGCAACCCAGGGAGGAGATGTGAAGGTAGATTGGTCAA
                      ____________________________________________________________
consensus GCTTGTGGGAAGCGTCTGATTGGGCAACCCAGGGAGGAGATGTGAAGGTAGATTGGTCAA
 
. : . : . : . : . : . :
rJMFF018B14+ AAGCTCCCTTCACTGCCTACTACAAAAACTTTGTTATCGACGGTTGTGTCGGAACTTCCT
rJMFF004L17+ AAGCTCCCTTCACTGCCTACTACAAAAACTTTGTTATCGACGGTTGTGTCGGAACTTCCT
JMFN016J16- AAGCTCCCTTCACTGCCTACTACAAAAACTTTGTTATCGACGGTTGTGTCGGAACTTCCT
                      ____________________________________________________________
consensus AAGCTCCCTTCACTGCCTACTACAAAAACTTTGTTATCGACGGTTGTGTCGGAACTTCCT
 
. : . : . : . : . : . :
rJMFF018B14+ CCTGCGCCGATAGTAAGCCATGGGGAAAGTATGCGCTTGATGCCGATGCCAATAATAAAC
rJMFF004L17+ CCTGCGCCGATAGTAAGCCATGGGGAAAGTATGCGCTTGATGCCGATGCCAATAATAAAC
JMFN016J16- CCTGCGCCGATAGTAAGCCATGGGGAAAGTATGCGCTTGATGCCGATGCCAATAATAAAC
                      ____________________________________________________________
consensus CCTGCGCCGATAGTAAGCCATGGGGAAAGTATGCGCTTGATGCCGATGCCAATAATAAAC
 
. : . : . : . : . : . :
rJMFF018B14+ TCCAAGGCGTACGAACAAAGAATAGGGTCTACAATTACTGCACTGATAACAAGCGTTTCG
rJMFF004L17+ TCCAAGGCGTACGAACAAAGAATAGGGTCTACAATTACTGCACTGATAACAAGCGTTTCG
JMFN016J16- TCCAAGGCGTACGAACAAAGAATAGGGTCTACAATTACTGCACTGATAACAAGCGTTTCG
                      ____________________________________________________________
consensus TCCAAGGCGTACGAACAAAGAATAGGGTCTACAATTACTGCACTGATAACAAGCGTTTCG
 
. : . : . : . : . : . :
rJMFF018B14+ GGGGCAACCCTCCTGCTGAATGCAAACCCGCAGGCCCACAGCCTAAATAATTTAAGTTGC
rJMFF004L17+ GGGGCAACCCTCCTGCTGAATGCAAACCCGCAGGCCCACAGCCTAAATAATTTAAGTTGC
JMFN016J16- GGGGCAACCCTCCTGCTGAATGCAAACCCGCAGGCCCACAGCCTAAATAATTTAAGTTGC
                      ____________________________________________________________
consensus GGGGCAACCCTCCTGCTGAATGCAAACCCGCAGGCCCACAGCCTAAATAATTTAAGTTGC
 
. : . : . : . : . : . :
rJMFF018B14+ CGCCCGGCCACTCGCGTGCGTCGTTACAGATCGATCAATAATAATGCATGAGATTCAATT
rJMFF004L17+ CGCCCGGCCACTCGCGTGCGTCGTTACAGATCGATCAATAATAATGCATGAGATTCAATT
JMFN016J16- CGCCCGGCCACTCGCGTGCGTCGTTACAGATCGATCAATAATAATGCATGAGATTCAATT
                      ____________________________________________________________
consensus CGCCCGGCCACTCGCGTGCGTCGTTACAGATCGATCAATAATAATGCATGAGATTCAATT
 
. : . : . : . : . : . :
rJMFF018B14+ CATTATTATTTCTCATTTTGTAGATAGGTTATTATTATCTAGCTAAGCTAGATTGTATGT
rJMFF004L17+ CATTATTATTTCTCATTTTGTAGATAGGTTATTATTATCTAGCTAAGCTAGATTGTATGT
JMFN016J16- CATTATTATTTCTCATTTTGTAGATAGGTTATTATTATCTAGCTAAGCTAGATTGTATGT
                      ____________________________________________________________
consensus CATTATTATTTCTCATTTTGTAGATAGGTTATTATTATCTAGCTAAGCTAGATTGTATGT
 
. : . : . : . : . : . :
rJMFF018B14+ AATCCACTCATATATATGTAATGTATATATGGAT
rJMFF004L17+ AATCCACTCATATATATGTAATGTATATATGGAT
JMFN016J16- AATCCACTCATATATATGTAATGTATATATGGATTGCAATTAATAAACATTATTTATTTC
                      ____________________________________________________________
consensus AATCCACTCATATATATGTAATGTATATATGGATTGCAATTAATAAACATTATTTATTTC