Contig 008936:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002O22Sequence543004448 (7)ref|XP_009593905.1|5e-74PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis]744008936 (6)ref|XP_010113097.1|4e-108Eukaryotic initiation factor 4A-1 [Morus notabilis] gb|EXC64543.1| Eukaryotic in
JMFF009A13Sequence593004448 (7)ref|XP_009593905.1|5e-90PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis]698008936 (6)ref|XP_010113097.1|1e-115Eukaryotic initiation factor 4A-1 [Morus notabilis] gb|EXC64543.1| Eukaryotic in
JMFF013K15Sequence595004448 (7)ref|XP_009593905.1|8e-91PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis]756008936 (6)ref|XP_010113097.1|2e-117Eukaryotic initiation factor 4A-1 [Morus notabilis] gb|EXC64543.1| Eukaryotic in
JMFF021D10Sequence536004448 (7)ref|XP_009593905.1|3e-90PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis]742008936 (6)ref|XP_010113097.1|3e-111Eukaryotic initiation factor 4A-1 [Morus notabilis] gb|EXC64543.1| Eukaryotic in
JMFN015C01Sequence609008936 (6)gb|AAD20980.1|7e-72translation initiation factor 4A2 [Zea mays]
JMSF039D04Sequence674004448 (7)ref|XP_009593905.1|7e-118PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis]815008936 (6)gb|AAD20980.1|6e-136translation initiation factor 4A2 [Zea mays]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF039D04+ CTTCTCAGCTACAATGCCTC
                      ____________________________________________________________
consensus CTTCTCAGCTACAATGCCTC
 
. : . : . : . : . : . :
rJMFF021D10+ GTGAAGC
rJMSF039D04+ CTGAGGCACTTGAGATAACAAGGAAATTCATGAACAAACCTGTGAGAATTCTTGTGAAGC
                      ____________________________________________________________
consensus CTGAGGCACTTGAGATAACAAGGAAATTCATGAACAAACCTGTGAGAATTCTTGTGAAGC
 
. : . : . : . : . : . :
rJMFF021D10+ GTGATGAGCTGACACTAGAGGGGTATTAAGCAATTCCATGTCAATGTCGACAAAGAAGAG
rJMFF009A13+ GGGTATTAAGCAATTCCATGTCAATGTCGACAAAGAAGAG
rJMSF039D04+ GTGATGAGCTGACACTAGA-GGGTATTAAGCAATTCCATGTCAATGTCGACAAAGAAGAG
rJMFF013K15+ GTGATGAGCTGACACTAGA-GGGTATTAAGCAATTCCATGTCAATGTCGACAAAGAAGAG
rJMFF002O22+ TAAGCAATTCCATGTCAATGTCGACGAAGAAGAG
                      ____________________________________________________________
consensus GTGATGAGCTGACACTAGA-GGGTATTAAGCAATTCCATGTCAATGTCGACAAAGAAGAG
 
. : . : . : . : . : . :
rJMFF021D10+ TGGAAGCTTGAGACACTTTGTGATTTGTACGAAACCCTTGCCATTACACAGAGTGTGATT
rJMFF009A13+ TGGAAGCTTGAGACACTTTGTGATTTGTACGAAACCCTTGCCATTACACAGAGTGTGATT
rJMSF039D04+ TGGAAGCTTGAGACACTTTGTGATTTGTACGAAACCCTTGCCATTACACAGAGTGTGATT
rJMFF013K15+ TGGAAGCTTGAGACACTTTGTGATTTGTACGAAACCCTTGCCATTACACAGAGTGTGATT
rJMFF002O22+ TGGAAGCTTGAGACACTTTGTGATTNGTACGAAACCCTTGCCATTACACAGAGTGTGATT
                      ____________________________________________________________
consensus TGGAAGCTTGAGACACTTTGTGATTTGTACGAAACCCTTGCCATTACACAGAGTGTGATT
 
. : . : . : . : . : . :
rJMFF021D10+ TTTGTGAATACCCGTCGTAAGGTTGACTGGTTAACTGACAAGATGAGAAGCCGAGACCAT
rJMFF009A13+ TTTGTGAATACCCGTCGTAAGGTTGACTGGTTAACTGACAAGATGAGAAGCCGAGACCAT
rJMSF039D04+ TTTGTGAATACCCGTCGTAAGGTTGACTGGTTAACTGACAAGATGAGAAGCCGAGACCAT
rJMFF013K15+ TTTGTGAATACCCGTCGTAAGGTTGACTGGTTAACTGACAAGATGAGAAGCCGAGACCAT
rJMFF002O22+ TTTGTGAATACCCGTCGTAAGGTTGACTGGTTAACTGACAAGATGAGAAGCCGAGACCAT
JMFN015C01- CGAGACCAT
                      ____________________________________________________________
consensus TTTGTGAATACCCGTCGTAAGGTTGACTGGTTAACTGACAAGATGAGAAGCCGAGACCAT
 
. : . : . : . : . : . :
rJMFF021D10+ ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
rJMFF009A13+ ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
rJMSF039D04+ ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
rJMFF013K15+ ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
rJMFF002O22+ ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
JMFN015C01- ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
                      ____________________________________________________________
consensus ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
 
. : . : . : . : . : . :
rJMFF021D10+ TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
rJMFF009A13+ TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
rJMSF039D04+ TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
rJMFF013K15+ TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
rJMFF002O22+ TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
JMFN015C01- TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
                      ____________________________________________________________
consensus TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
 
. : . : . : . : . : . :
rJMFF021D10+ GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
rJMFF009A13+ GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
rJMSF039D04+ GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
rJMFF013K15+ GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
rJMFF002O22+ GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
JMFN015C01- GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
                      ____________________________________________________________
consensus GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
 
. : . : . : . : . : . :
rJMFF021D10+ CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
rJMFF009A13+ CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
rJMSF039D04+ CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
rJMFF013K15+ CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
rJMFF002O22+ CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
JMFN015C01- CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
                      ____________________________________________________________
consensus CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
 
. : . : . : . : . : . :
rJMFF021D10+ AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
rJMFF009A13+ AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
rJMSF039D04+ AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
rJMFF013K15+ AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
rJMFF002O22+ AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
JMFN015C01- AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
                      ____________________________________________________________
consensus AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
 
. : . : . : . : . : . :
rJMFF021D10+ CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
rJMFF009A13+ CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
rJMSF039D04+ CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
rJMFF013K15+ CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
rJMFF002O22+ CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
JMFN015C01- CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
                      ____________________________________________________________
consensus CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
 
. : . : . : . : . : . :
rJMFF021D10+ AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
rJMFF009A13+ AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
rJMSF039D04+ AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
rJMFF013K15+ AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
rJMFF002O22+ AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
JMFN015C01- AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
                      ____________________________________________________________
consensus AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
 
. : . : . : . : . : . :
rJMFF021D10+ ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
rJMFF009A13+ ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
rJMSF039D04+ ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
rJMFF013K15+ ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
rJMFF002O22+ ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
JMFN015C01- ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
                      ____________________________________________________________
consensus ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
 
. : . : . : . : . : . :
rJMFF021D10+ TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTACCTTATTAACCTAAGGATTGT
rJMFF009A13+ TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTA
rJMSF039D04+ TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTACCTTATTAACCTAAGGATTGT
rJMFF013K15+ TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTACCTTATTAACCTAAGGATTGT
rJMFF002O22+ TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTACCTTATTAACCTAAGGATTGT
JMFN015C01- TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTACCTTATTAACCTAAGGATTGT
                      ____________________________________________________________
consensus TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTACCTTATTAACCTAAGGATTGT
 
. : . : . : . : . : . :
rJMFF021D10+ TACTTTGGTTATGT
rJMSF039D04+ TACTTTGGTTATGTTT
rJMFF013K15+ TACTTTGGTTATGTTTTGTCTTTTATTGCT
rJMFF002O22+ TACTTTGGTTATGTTTTGTCTTTTATTGCTTGAATGATGGAAGCAGTGAT
JMFN015C01- TACTTTGGTTATGTTTTGTCTTTTATTGCTTGAATGATGGAAGCAGTGATTACTGGGAGC
                      ____________________________________________________________
consensus TACTTTGGTTATGTTTTGTCTTTTATTGCTTGAATGATGGAAGCAGTGATTACTGGGAGC