| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002O22 | Sequence | 543 | 004448 (7) | ref|XP_009593905.1| | 5e-74 | PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis] | 744 | 008936 (6) | ref|XP_010113097.1| | 4e-108 | Eukaryotic initiation factor 4A-1 [Morus notabilis] gb|EXC64543.1| Eukaryotic in |
| JMFF009A13 | Sequence | 593 | 004448 (7) | ref|XP_009593905.1| | 5e-90 | PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis] | 698 | 008936 (6) | ref|XP_010113097.1| | 1e-115 | Eukaryotic initiation factor 4A-1 [Morus notabilis] gb|EXC64543.1| Eukaryotic in |
| JMFF013K15 | Sequence | 595 | 004448 (7) | ref|XP_009593905.1| | 8e-91 | PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis] | 756 | 008936 (6) | ref|XP_010113097.1| | 2e-117 | Eukaryotic initiation factor 4A-1 [Morus notabilis] gb|EXC64543.1| Eukaryotic in |
| JMFF021D10 | Sequence | 536 | 004448 (7) | ref|XP_009593905.1| | 3e-90 | PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis] | 742 | 008936 (6) | ref|XP_010113097.1| | 3e-111 | Eukaryotic initiation factor 4A-1 [Morus notabilis] gb|EXC64543.1| Eukaryotic in |
| JMFN015C01 | Sequence | 609 | 008936 (6) | gb|AAD20980.1| | 7e-72 | translation initiation factor 4A2 [Zea mays] | |||||
| JMSF039D04 | Sequence | 674 | 004448 (7) | ref|XP_009593905.1| | 7e-118 | PREDICTED: eukaryotic initiation factor 4A-9-like [Nicotiana tomentosiformis] | 815 | 008936 (6) | gb|AAD20980.1| | 6e-136 | translation initiation factor 4A2 [Zea mays] |
This contig is upended
. : . : . : . : . : . :
rJMSF039D04+ CTTCTCAGCTACAATGCCTC
____________________________________________________________
consensus CTTCTCAGCTACAATGCCTC
. : . : . : . : . : . :
rJMFF021D10+ GTGAAGC
rJMSF039D04+ CTGAGGCACTTGAGATAACAAGGAAATTCATGAACAAACCTGTGAGAATTCTTGTGAAGC
____________________________________________________________
consensus CTGAGGCACTTGAGATAACAAGGAAATTCATGAACAAACCTGTGAGAATTCTTGTGAAGC
. : . : . : . : . : . :
rJMFF021D10+ GTGATGAGCTGACACTAGAGGGGTATTAAGCAATTCCATGTCAATGTCGACAAAGAAGAG
rJMFF009A13+ GGGTATTAAGCAATTCCATGTCAATGTCGACAAAGAAGAG
rJMSF039D04+ GTGATGAGCTGACACTAGA-GGGTATTAAGCAATTCCATGTCAATGTCGACAAAGAAGAG
rJMFF013K15+ GTGATGAGCTGACACTAGA-GGGTATTAAGCAATTCCATGTCAATGTCGACAAAGAAGAG
rJMFF002O22+ TAAGCAATTCCATGTCAATGTCGACGAAGAAGAG
____________________________________________________________
consensus GTGATGAGCTGACACTAGA-GGGTATTAAGCAATTCCATGTCAATGTCGACAAAGAAGAG
. : . : . : . : . : . :
rJMFF021D10+ TGGAAGCTTGAGACACTTTGTGATTTGTACGAAACCCTTGCCATTACACAGAGTGTGATT
rJMFF009A13+ TGGAAGCTTGAGACACTTTGTGATTTGTACGAAACCCTTGCCATTACACAGAGTGTGATT
rJMSF039D04+ TGGAAGCTTGAGACACTTTGTGATTTGTACGAAACCCTTGCCATTACACAGAGTGTGATT
rJMFF013K15+ TGGAAGCTTGAGACACTTTGTGATTTGTACGAAACCCTTGCCATTACACAGAGTGTGATT
rJMFF002O22+ TGGAAGCTTGAGACACTTTGTGATTNGTACGAAACCCTTGCCATTACACAGAGTGTGATT
____________________________________________________________
consensus TGGAAGCTTGAGACACTTTGTGATTTGTACGAAACCCTTGCCATTACACAGAGTGTGATT
. : . : . : . : . : . :
rJMFF021D10+ TTTGTGAATACCCGTCGTAAGGTTGACTGGTTAACTGACAAGATGAGAAGCCGAGACCAT
rJMFF009A13+ TTTGTGAATACCCGTCGTAAGGTTGACTGGTTAACTGACAAGATGAGAAGCCGAGACCAT
rJMSF039D04+ TTTGTGAATACCCGTCGTAAGGTTGACTGGTTAACTGACAAGATGAGAAGCCGAGACCAT
rJMFF013K15+ TTTGTGAATACCCGTCGTAAGGTTGACTGGTTAACTGACAAGATGAGAAGCCGAGACCAT
rJMFF002O22+ TTTGTGAATACCCGTCGTAAGGTTGACTGGTTAACTGACAAGATGAGAAGCCGAGACCAT
JMFN015C01- CGAGACCAT
____________________________________________________________
consensus TTTGTGAATACCCGTCGTAAGGTTGACTGGTTAACTGACAAGATGAGAAGCCGAGACCAT
. : . : . : . : . : . :
rJMFF021D10+ ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
rJMFF009A13+ ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
rJMSF039D04+ ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
rJMFF013K15+ ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
rJMFF002O22+ ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
JMFN015C01- ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
____________________________________________________________
consensus ACAGTGTCAGCCACCCATGGTGACATGGACCAGAACACAAGGGACATTATTATGCGTGAA
. : . : . : . : . : . :
rJMFF021D10+ TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
rJMFF009A13+ TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
rJMSF039D04+ TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
rJMFF013K15+ TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
rJMFF002O22+ TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
JMFN015C01- TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
____________________________________________________________
consensus TTCCGTTCTGGGTCCTCCCGTGTTCTCATCACTACTGATCTGTTGGCAAGAGGAATTGAT
. : . : . : . : . : . :
rJMFF021D10+ GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
rJMFF009A13+ GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
rJMSF039D04+ GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
rJMFF013K15+ GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
rJMFF002O22+ GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
JMFN015C01- GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
____________________________________________________________
consensus GTTCAACAAGTATCCCTCGTCATTAACTATGATCTCCCTACTCAACCCGAGAACTACCTG
. : . : . : . : . : . :
rJMFF021D10+ CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
rJMFF009A13+ CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
rJMSF039D04+ CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
rJMFF013K15+ CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
rJMFF002O22+ CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
JMFN015C01- CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
____________________________________________________________
consensus CATCGTATTGGTCGTAGTGGAAGGTTCGGGAGGAAAGGTGTGGCAATCAACTTTGTAACA
. : . : . : . : . : . :
rJMFF021D10+ AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
rJMFF009A13+ AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
rJMSF039D04+ AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
rJMFF013K15+ AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
rJMFF002O22+ AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
JMFN015C01- AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
____________________________________________________________
consensus AAGGACGATGAGAGGATGCTTTTTGACATCCAGAAGTTCTACAACGTGATGATCGAGGAG
. : . : . : . : . : . :
rJMFF021D10+ CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
rJMFF009A13+ CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
rJMSF039D04+ CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
rJMFF013K15+ CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
rJMFF002O22+ CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
JMFN015C01- CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
____________________________________________________________
consensus CTGCCAGCAAATGTTGCTGATCTCCTGTAACAAAGTTTTGTCACTACAAGCTCAAAAACC
. : . : . : . : . : . :
rJMFF021D10+ AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
rJMFF009A13+ AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
rJMSF039D04+ AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
rJMFF013K15+ AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
rJMFF002O22+ AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
JMFN015C01- AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
____________________________________________________________
consensus AGTCTCTTCCTGCTTTCGACTTTTCTTCTTTTCTGCAGTTCCCTTAGTTTAGCAACTCTT
. : . : . : . : . : . :
rJMFF021D10+ ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
rJMFF009A13+ ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
rJMSF039D04+ ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
rJMFF013K15+ ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
rJMFF002O22+ ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
JMFN015C01- ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
____________________________________________________________
consensus ATTGTCTAAATTTATGAAGCAATGTAATCCATCTCTGTATCTTATAAGTGGGGATCAATT
. : . : . : . : . : . :
rJMFF021D10+ TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTACCTTATTAACCTAAGGATTGT
rJMFF009A13+ TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTA
rJMSF039D04+ TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTACCTTATTAACCTAAGGATTGT
rJMFF013K15+ TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTACCTTATTAACCTAAGGATTGT
rJMFF002O22+ TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTACCTTATTAACCTAAGGATTGT
JMFN015C01- TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTACCTTATTAACCTAAGGATTGT
____________________________________________________________
consensus TAGAAGATTTTGCATTTGAGGTTTGTAACTGAAAGGTTACCTTATTAACCTAAGGATTGT
. : . : . : . : . : . :
rJMFF021D10+ TACTTTGGTTATGT
rJMSF039D04+ TACTTTGGTTATGTTT
rJMFF013K15+ TACTTTGGTTATGTTTTGTCTTTTATTGCT
rJMFF002O22+ TACTTTGGTTATGTTTTGTCTTTTATTGCTTGAATGATGGAAGCAGTGAT
JMFN015C01- TACTTTGGTTATGTTTTGTCTTTTATTGCTTGAATGATGGAAGCAGTGATTACTGGGAGC
____________________________________________________________
consensus TACTTTGGTTATGTTTTGTCTTTTATTGCTTGAATGATGGAAGCAGTGATTACTGGGAGC