Contig 008931:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013I14Sequence630008931 (2)ref|XP_009778590.1|1e-74PREDICTED: protease Do-like 5, chloroplastic [Nicotiana sylvestris]
JMSF043B24Sequence656011874 (5)ref|XP_009778590.1|9e-47PREDICTED: protease Do-like 5, chloroplastic [Nicotiana sylvestris]725008931 (2)ref|XP_009786681.1|1e-45PREDICTED: protease Do-like 5, chloroplastic [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF043B24-                                                                 TTCCA
                      ____________________________________________________________
consensus                                                                    TTCCA
 
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rJMSF043B24-          AGAAGGATCCATTGCAACATTCTGCATCTATTTGAAATTCAAGTGCAATAGATCTTCANA
                      ____________________________________________________________
consensus             AGAAGGATCCATTGCAACATTCTGCATCTATTTGAAATTCAAGTGCAATAGATCTTCANA
 
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rJMSF043B24-          ATCTATCTTTGTAAGCTGTTCCATACACGATCAAGTAAGGTACGGTTCGTACAACTGTGT
                      ____________________________________________________________
consensus             ATCTATCTTTGTAAGCTGTTCCATACACGATCAAGTAAGGTACGGTTCGTACAACTGTGT
 
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rJMSF043B24-          CTACTGGTATGGCAAAATTAACTCCCGAGGACATTCCTGAACCTTTGCGAGTGAACGTGG
                      ____________________________________________________________
consensus             CTACTGGTATGGCAAAATTAACTCCCGAGGACATTCCTGAACCTTTGCGAGTGAACGTGG
 
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rJMSF043B24-          CTGTATTTACTCCAACAACATGGCCGTCTGAATCAATCAATGGGCCGCCAGAATTCCCGG
                      ____________________________________________________________
consensus             CTGTATTTACTCCAACAACATGGCCGTCTGAATCAATCAATGGGCCGCCAGAATTCCCGG
 
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rJMSF043B24-          CATTAATAGCGGCATCTGTTTGAATAGCACCTCGAATGGCTCCTCCACTCGGTGAAGGTA
                      ____________________________________________________________
consensus             CATTAATAGCGGCATCTGTTTGAATAGCACCTCGAATGGCTCCTCCACTCGGTGAAGGTA
 
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rJMSF043B24-          TCTCTCTGCCTAATCCACTGACCACCTGGACATCTAAATTAATCAAATAGTTGCATGAAA
                      ____________________________________________________________
consensus             TCTCTCTGCCTAATCCACTGACCACCTGGACATCTAAATTAATCAAATAGTTGCATGAAA
 
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rJMSF043B24-          TGCAATCATTCAATAAGTGCCAATAACCATATGCGCCTTTCGACAAAAAGAAATTGGTAG
                      ____________________________________________________________
consensus             TGCAATCATTCAATAAGTGCCAATAACCATATGCGCCTTTCGACAAAAAGAAATTGGTAG
 
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rJMSF043B24-          TATGAGGAGAATATTTAAAGTTTACGAAAGTAGACAATTTCCGGGTAGCATGCGGCATGA
                      ____________________________________________________________
consensus             TATGAGGAGAATATTTAAAGTTTACGAAAGTAGACAATTTCCGGGTAGCATGCGGCATGA
 
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rJMSF043B24-          AGTGTGATGACCAATTCAAAATCACGTTACCCCTGTTGTTAGCGTGTTCTCAAATCCATA
                      ____________________________________________________________
consensus             AGTGTGATGACCAATTCAAAATCACGTTACCCCTGTTGTTAGCGTGTTCTCAAATCCATA
 
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rJMSF043B24-          GGGATTTCCTATGGCANAGCAACTCTGACCAACACGTAAACCACGAGATGAACCGAGAAT
JMFN013I14+                                        CAACACGTAAACCACGAGATGAACCGAGAAT
                      ____________________________________________________________
consensus             GGGATTTCCTATGGCANAGCAACTCTGACCAACACGTAAACCACGAGATGAACCGAGAAT
 
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rJMSF043B24-          GACAGGCTTTAGTTCAACCCCTTCAACGTCANCCTTC-AGACAGCGAGATCATTTGCGGG
JMFN013I14+           GACAGGCTTTAGTTCAACCCCTTCAACGTCAACCTTCAAGACAGCGAGATCATTTGCGGG
                      ____________________________________________________________
consensus             GACAGGCTTTAGTTCAACCCCTTCAACGTCAACCTTCAAGACAGCGAGATCATTTGCGGG
 
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rJMSF043B24-          AATCCACACCAATAATCTTTCCTTC-TTANCAATGCTATTACCTTTANCGTCCACTAAAA
JMFN013I14+           -ATCCACACCAATAATCTTTCCTTCTTTAGCAATGCTATTACCTTTAGCGTCCACTAAAA
                      ____________________________________________________________
consensus             AATCCACACCAATAATCTTTCCTTCTTTAGCAATGCTATTACCTTTAGCGTCCACTAAAA
 
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rJMSF043B24-          A                                                           
JMFN013I14+           ATACCTTACAACGCTGCCGTCCACTTTGATCTGTTGCCAATTTAGCGACGACATGGTAAT
                      ____________________________________________________________
consensus             ATACCTTACAACGCTGCCGTCCACTTTGATCTGTTGCCAATTTAGCGACGACATGGTAAT
 
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JMFN013I14+           TAGTAACAATGTGACCAAACTTATCCCAAATGAAGCCAGAACCTGTTCCTTCCACCTTTG
                      ____________________________________________________________
consensus             TAGTAACAATGTGACCAAACTTATCCCAAATGAAGCCAGAACCTGTTCCTTCCACCTTTG
 
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JMFN013I14+           CGTTCTCATCATCTGCCAGTTCGGTCACAGCAGTGTCCTTGAAGCCTTTGGCCAGCTCAA
                      ____________________________________________________________
consensus             CGTTCTCATCATCTGCCAGTTCGGTCACAGCAGTGTCCTTGAAGCCTTTGGCCAGCTCAA
 
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JMFN013I14+           TATCCTTAATGTAAACAACCGAAGGGGATGCCTCCTGAAAGAGTTGAACAAGCCTGTCTT
                      ____________________________________________________________
consensus             TATCCTTAATGTAAACAACCGAAGGGGATGCCTCCTGAAAGAGTTGAACAAGCCTGTCTT
 
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JMFN013I14+           CCTCTTGCTGAAGCTCATCATCCACTTGTAATGCGGCAGCAGAGGAATTAGCCGATGAAG
                      ____________________________________________________________
consensus             CCTCTTGCTGAAGCTCATCATCCACTTGTAATGCGGCAGCAGAGGAATTAGCCGATGAAG
 
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JMFN013I14+           TCTGGTACAAATCAAGAATGTAAGAGGACACAACCGAAGCAGTAAAGGCGAAAGCTTTAC
                      ____________________________________________________________
consensus             TCTGGTACAAATCAAGAATGTAAGAGGACACAACCGAAGCAGTAAAGGCGAAAGCTTTAC
 
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JMFN013I14+           GCCTTGTTAAGCAATGGGTGTTGCTTGAATTTGAAGAGGAAGAGGAAGAAGGAGGTGCTT
                      ____________________________________________________________
consensus             GCCTTGTTAAGCAATGGGTGTTGCTTGAATTTGAAGAGGAAGAGGAAGAAGGAGGTGCTT
 
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JMFN013I14+           GGGGCTGGTGAGTAGGAGCAGAAGGTGGATTTGGGCGTATGAGGACACAGTGGGGTGAAG
                      ____________________________________________________________
consensus             GGGGCTGGTGAGTAGGAGCAGAAGGTGGATTTGGGCGTATGAGGACACAGTGGGGTGAAG