Contig 008921:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048O24Sequence419008921 (4)ref|XP_009626872.1|4e-55PREDICTED: dynein light chain LC6, flagellar outer arm-like [Nicotiana tomentos165008921 (4)
JMFN009K11Sequence640008921 (4)ref|XP_011072629.1|5e-39PREDICTED: rho guanine nucleotide exchange factor 8-like [Sesamum indicum]
JMFN013G15Sequence562008921 (4)ref|XP_009626872.1|5e-54PREDICTED: dynein light chain LC6, flagellar outer arm-like [Nicotiana tomentos

Alignment

This contig is upended


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JMFN013G15+                            GGCTTGCAGGGCTGTAGTCCATTCAAAGTTCAAACACACCCTG
JMFN009K11+                               TTGCAGGGCTGTAGTCCATTCAAAGTTCAAACACACCCTG
                      ____________________________________________________________
consensus                              GGCTTGCAGGGCTGTAGTCCATTCAAAGTTCAAACACACCCTG
 
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rJMFF048O24-                                                 AGCAGTAATTACACATCATCT
JMFN013G15+           GAAGCATCTTCAGCTATGGATTAGAGAGAACAAAAAACTAGCAGTAATTACACATCATCT
JMFN009K11+           GAAGCATCTTCAGCTATGGATTAGAGAGAACAAAAAACTAGCAGTAATTACACATCATCT
                      ____________________________________________________________
consensus             GAAGCATCTTCAGCTATGGATTAGAGAGAACAAAAAACTAGCAGTAATTACACATCATCT
 
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rJMFF048O24-          ATTACATGAATCTAGTCTGGGCGAGGCCAACCAGATCGGACTCTCATGGAGTCTAAATTA
JMFN013G15+           ATTACATGAATCTAGTCTGGGCGAGGCCAACCAGATCGGACTCTCATGGAGTCTAAATTA
JMFN009K11+           ATTACATGAATCTAGTCTGGGCGAGGCCAACCAGATCGGACTCTCATGGAGTCTAAATTA
                      ____________________________________________________________
consensus             ATTACATGAATCTAGTCTGGGCGAGGCCAACCAGATCGGACTCTCATGGAGTCTAAATTA
 
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rJMFF048O24-          CAATGAGCTGCCAACCAGTCTGCACTTGGGAGTTTGTAATGGCAGCAGATCAAGGAGAGG
JMFN013G15+           CAATGAGCTGCCAACCAGTCTGCACTTGGGAGTTTGTAATGGCAGCAGATCAAGGAGAGG
JMFF048O24+              TGAGCTGCCAACCAGTCTGCACTTGGGAGTTTGTAATGGCAGCAGATCAAGGAGAGG
JMFN009K11+           CAATGAGCTGCCAACCAGTCTGCACTTGGGAGTTTGTAATGGCAGCAGATCAAGGAGAGG
                      ____________________________________________________________
consensus             CAATGAGCTGCCAACCAGTCTGCACTTGGGAGTTTGTAATGGCAGCAGATCAAGGAGAGG
 
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rJMFF048O24-          TTGGGGGAGAAGAAGACCCTTTGA                                    
JMFN013G15+           TTGGGGGAGAAGAAGACCCTTTGAAGATGAGGAAGTTGAGAGTCTCCAAGGTGAAGTAGA
JMFF048O24+           TTGGGGGAGAAGAAGACCCTTTGAAGATGAGGAAGTTGAGAGTCTCCAAGGTGAAGTAGA
JMFN009K11+           TTGGGGGAGAAGAAGACCCTTTGAAGATGAGGAAGTTGAGAGTCTCCAAGGTGAAGTAGA
                      ____________________________________________________________
consensus             TTGGGGGAGAAGAAGACCCTTTGAAGATGAGGAAGTTGAGAGTCTCCAAGGTGAAGTAGA
 
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JMFN013G15+           TGAAAGTTCCTTTGGTATGAGTGAAGAAACAACTGAAGTGTGAGCCCACTACACATTGCC
JMFF048O24+           TGAAAGTTCCTTTGGTATGAGTGAAGAAACAACTGAAGTGTGAGCCCACTACACATTGCC
JMFN009K11+           TGAAAGTTCCTTTGGTATGAGTGAAGAAACAACTGAAGTGTGAGCCCACTACACATTGCC
                      ____________________________________________________________
consensus             TGAAAGTTCCTTTGGTATGAGTGAAGAAACAACTGAAGTGTGAGCCCACTACACATTGCC
 
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JMFN013G15+           ACCCGCCTCCATATTCCTTGTCAAACTCCT                              
JMFF048O24+           ACCCGCCTCCATATTCCTTGTCAAACTCCT                              
JMFN009K11+           ACCCGCCTCCATATTCCTTGTCAAACTCCTGCACATACATCATAATCAGGGTAAAAGATG
                      ____________________________________________________________
consensus             ACCCGCCTCCATATTCCTTGTCAAACTCCTGCACATACATCATAATCAGGGTAAAAGATG
 
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JMFN009K11+           AAGAAGCAGGAAGAAAGGGTTAAGGGCTACAAGGTTACAGCTTTTACCTTCTTGATGTGA
                      ____________________________________________________________
consensus             AAGAAGCAGGAAGAAAGGGTTAAGGGCTACAAGGTTACAGCTTTTACCTTCTTGATGTGA
 
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JMFN009K11+           GCAGCAATGGATTTGCAGTCCAGAACATCATAAAGATCCAGAGCTTGAGAAGCACAAGCC
                      ____________________________________________________________
consensus             GCAGCAATGGATTTGCAGTCCAGAACATCATAAAGATCCAGAGCTTGAGAAGCACAAGCC
 
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JMFN009K11+           ATGGCTTGAATCTGCATCTTCCCTGGCATGTCTGTATCTTCAACCAAAGCTTTTCCTTCC
                      ____________________________________________________________
consensus             ATGGCTTGAATCTGCATCTTCCCTGGCATGTCTGTATCTTCAACCAAAGCTTTTCCTTCC
 
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JMFN009K11+           AACATCTTCTCTCTTCTGGTTCTTGCTTGTTACCCAGAAAGGAAGGTATCTCTCTTTTTC
                      ____________________________________________________________
consensus             AACATCTTCTCTCTTCTGGTTCTTGCTTGTTACCCAGAAAGGAAGGTATCTCTCTTTTTC