Contig 008917:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN008K18Sequence504008917 (2)emb|CDP06893.1|4e-09unnamed protein product [Coffea canephora]
JMFN038H14Sequence612008917 (2)sp|Q06450.2|ATP5E_IPOBA4e-36RecName: Full=ATP synthase subunit epsilon, mitochondrial; Short=ATPase subunit

Alignment

This contig is upended


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JMFN038H14-                                                       TGGCGTCGAACGCAGC
                      ____________________________________________________________
consensus                                                         TGGCGTCGAACGCAGC
 
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JMFN038H14-           GGTGCCGTTCTGGAGAGCAGCGGGGATGACTTATATCACGTACTCGAACCTGTGCGCAAA
                      ____________________________________________________________
consensus             GGTGCCGTTCTGGAGAGCAGCGGGGATGACTTATATCACGTACTCGAACCTGTGCGCAAA
 
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JMFN038H14-           CATGGTGAGGAACTGCCTCAAGGATCCTTACAAGTCTGAAGCTTTGAGCAGAGAGAAGGT
JMFN008K18+                                               TGAAGCTTTGAGCAGAGAGAAGGT
                      ____________________________________________________________
consensus             CATGGTGAGGAACTGCCTCAAGGATCCTTACAAGTCTGAAGCTTTGAGCAGAGAGAAGGT
 
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JMFN038H14-           CCACTTCTCCATCTCCAAGTGGATCGATGGAAAAGCGGAGAAGCCTGCTATCCGCTCGGA
JMFN008K18+           CCACTTCTCCATCTCCAAGTGGATCGATGGAAAAGCGGAGAAGCCTGCTATCCGCTCGGA
                      ____________________________________________________________
consensus             CCACTTCTCCATCTCCAAGTGGATCGATGGAAAAGCGGAGAAGCCTGCTATCCGCTCGGA
 
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JMFN038H14-           CACTACTGAAGCATGATATTGATCTTGGGTGCTCTGGGCTCGAGTGTTCGCCTTTGAATT
JMFN008K18+           CACTCCTGAAGCATGATATTGATCTTGGGTGCTCTGGGCTCGAGTGTTCGCCTTTGAATT
                      ____________________________________________________________
consensus             CACTCCTGAAGCATGATATTGATCTTGGGTGCTCTGGGCTCGAGTGTTCGCCTTTGAATT
 
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JMFN038H14-           CCGCTGGCATTCTTATAACATGCTCCGCTCCCTCGCACACGAGAGGCTGGAAATAATGTA
JMFN008K18+           CCGCTGGCATTCTTATAACATGCTCCGCTCCCTCGCACACGAGAGGCTGGAAATAATGTA
                      ____________________________________________________________
consensus             CCGCTGGCATTCTTATAACATGCTCCGCTCCCTCGCACACGAGAGGCTGGAAATAATGTA
 
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JMFN038H14-           GGTGATGAAGTTGTTGGCGAGGGCCGGGGATCTTGATTTTGTTGACAAATAATTGGATCA
JMFN008K18+           GGTGATGAAGTTGTTGGCGAGGGCCGGGGATCTTGATTTTGTTGACAAATAATTGGATCA
                      ____________________________________________________________
consensus             GGTGATGAAGTTGTTGGCGAGGGCCGGGGATCTTGATTTTGTTGACAAATAATTGGATCA
 
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JMFN038H14-           TAATAGTTTTACTGGCAATTGTGTCCATAGAACATTGTGTTTGATTCATTGGAGTTATTG
JMFN008K18+           TAATAGTTTTACTGGCAATTGTGTCCATAGAACATTGTGTTTGATTCATTGGAGTTATTG
                      ____________________________________________________________
consensus             TAATAGTTTTACTGGCAATTGTGTCCATAGAACATTGTGTTTGATTCATTGGAGTTATTG
 
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JMFN038H14-           TTTTCTCCATCTGTGATTGAAGCACAAATGAAAGTGCCATAACATACCCTTTTGGTGTTG
JMFN008K18+           TTTTCTCCATCTGTGATTGAAGCACAAATGAAAGTGCCATAACATACCCTTTTGGTGTTG
                      ____________________________________________________________
consensus             TTTTCTCCATCTGTGATTGAAGCACAAATGAAAGTGCCATAACATACCCTTTTGGTGTTG
 
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JMFN038H14-           GCCTGGGGATCTCCTTTTTGTTGACAAACAATTGGATTTAGTGGCAATTATGTCCATGTA
JMFN008K18+           GCCTGGGGATCTCCTTTTTGTTGACAAACAATTGGATTTAGTGGCAATTATGTCCATGTA
                      ____________________________________________________________
consensus             GCCTGGGGATCTCCTTTTTGTTGACAAACAATTGGATTTAGTGGCAATTATGTCCATGTA
 
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JMFN038H14-           ATAATGTTTTTGATTCATTAGTGTT                                   
JMFN008K18+           ATAATGTTTTTGATTCATTAGTGTTXXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTC
                      ____________________________________________________________
consensus             ATAATGTTTTTGATTCATTAGTGTTNNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTC