Contig 008910:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN006C23Sequence618008910 (3)gb|KJB48499.1|2e-45hypothetical protein B456_008G072300 [Gossypium raimondii]
JMSF016L03Sequence550008910 (3)emb|CDP04362.1|2e-47unnamed protein product [Coffea canephora]742008910 (3)emb|CDP04362.1|1e-44unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF016L03-                          GGCACCTATTGTATTACATCAAGGATCTCTTTCCCCAGAAGCTT
                      ____________________________________________________________
consensus                             GGCACCTATTGTATTACATCAAGGATCTCTTTCCCCAGAAGCTT
 
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rJMSF016L03-          AATTGCATGGTAAATCCATAGCTACTGACTGAATAAAAACATAGTATATAATAATAATAA
                      ____________________________________________________________
consensus             AATTGCATGGTAAATCCATAGCTACTGACTGAATAAAAACATAGTATATAATAATAATAA
 
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rJMSF016L03-          CAACAATACCAAGGGCGAGTACCAAAACCTCAAGCTTTACTGTTTAGACAATGTGGATTC
                      ____________________________________________________________
consensus             CAACAATACCAAGGGCGAGTACCAAAACCTCAAGCTTTACTGTTTAGACAATGTGGATTC
 
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rJMSF016L03-          GATTTAAGAAAACAAGGGACAAGTTGGCGAAGTAATACAAACAGAGAGTATAATCAGTCG
                      ____________________________________________________________
consensus             GATTTAAGAAAACAAGGGACAAGTTGGCGAAGTAATACAAACAGAGAGTATAATCAGTCG
 
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rJMSF016L03-          ATACACATGACAGCCTCAAATACTTGCAATCCTCGTGCAAATCCAAGGTGAGGTGAAGAG
JMFN006C23+                                        TCCTCGTGCAAATCCAAGGTGAGGTGAAGAG
                      ____________________________________________________________
consensus             ATACACATGACAGCCTCAAATACTTGCAATCCTCGTGCAAATCCAAGGTGAGGTGAAGAG
 
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rJMSF016L03-          TTGCTATGGATCAAGTATTCCTTAATTTTTTGTCTTTCAAACGACGTTTTTCTTTCTTGA
JMSF016L03+                                                    CGACGTTTTTCTTTCTTGA
JMFN006C23+           TTGCTATGGATCAAGTATTCCTTAATTTTTTGTCTTTCAAACGACGTTTTTCTTTCTTGA
                      ____________________________________________________________
consensus             TTGCTATGGATCAAGTATTCCTTAATTTTTTGTCTTTCAAACGACGTTTTTCTTTCTTGA
 
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rJMSF016L03-          AACTTGCAACACTTCGATCAAAGGTGCTCCTAGTGTGTTTGCACATAAACAACAGATCTT
JMSF016L03+           AACTTGCAACACTTCGATCAAAGGTGCTCCTAGTGTGTTTGCACATAAACAACAGATCTT
JMFN006C23+           AACTTGCAACACTTCGATCAAAGGTGCTCCTAGTGTGTTTGCACATAAACAACAGATCTT
                      ____________________________________________________________
consensus             AACTTGCAACACTTCGATCAAAGGTGCTCCTAGTGTGTTTGCACATAAACAACAGATCTT
 
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rJMSF016L03-          GCAATGAATCTTTCAACACTTCCCTAGCTGGATCCCCAGTAGTCTGAACTCTTATGTTCA
JMSF016L03+           GCAATGAATCTTTCAACACTTCCCTAGCTGGATCCCCAGTAGTCTGAACTCTTATGTTCA
JMFN006C23+           GCAATGAATCTTTCAACACTTCCCTAGCTGGATCCCCAGTAGTCTGAACTCTTATGTTCA
                      ____________________________________________________________
consensus             GCAATGAATCTTTCAACACTTCCCTAGCTGGATCCCCAGTAGTCTGAACTCTTATGTTCA
 
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rJMSF016L03-          CACGAACCTCAGAGGGATGTGGAATGCTATACCCAGAGACTACAACTCTGGGATCTTGGT
JMSF016L03+           CACGAACCTCAGAGGGATGTGGAATGCTATACCCAGAGACTACAACTCTGGGATCTTGGT
JMFN006C23+           CACGAACCTCAGAGGGATGTGGAATGCTATACCCAGAGACTACAACTCTGGGATCTTGGT
                      ____________________________________________________________
consensus             CACGAACCTCAGAGGGATGTGGAATGCTATACCCAGAGACTACAACTCTGGGATCTTGGT
 
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rJMSF016L03-          TAAGGGTGAATCTGAGAGCATTGGCGAGTGTATGATCCTCGTCTGTCAACGAGAAAGTAG
JMSF016L03+           TAAGGGTGAATCTGAGAGCATTGGCGAGTGTATGATCCTCGTCTGTCAACGAGAAAGTAG
JMFN006C23+           TAAGGGTGAATCTGAGAGCATTGGCGAGTGTATGATCCTCGTCTGTCAACGAGAAAGTAG
                      ____________________________________________________________
consensus             TAAGGGTGAATCTGAGAGCATTGGCGAGTGTATGATCCTCGTCTGTCAACGAGAAAGTAG
 
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rJMSF016L03-          CATTGGATTGATCATGGAGTGTACCGTGTTCCATTTATCAATCGCAACAAACTCTTCAGA
JMSF016L03+           CATTGGATTGATCATGGAGTGTACCGTGTTCCATTTATCAATCGCAACAAACTCTTCAGA
JMFN006C23+           CATTGGATTGATCATGGAGTGTACCGTGTTCCATTTAT-------------CTCTTCAGA
                      ____________________________________________________________
consensus             CATTGGATTGATCATGGAGTGTACCGTGTTCCATTTATCAATCGCAACAAACTCTTCAGA
 
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rJMSF016L03-          CGATTTGGACTTTCTAGCAGCAGCAGCAGTCCACGGTGGGTCACGGCTCCGGATGGCGGC
JMSF016L03+           CGATTTGGACTTTCTAGCAGCAGCAGCAGTCCACGGTGGGTCACGGCTCCGGATGGCGGC
JMFN006C23+           CGATTTGGACTTTCTAGCAGCAGCAGCAGTCCACGGTGGGTCACGGCTCCGGATGGCGGC
                      ____________________________________________________________
consensus             CGATTTGGACTTTCTAGCAGCAGCAGCAGTCCACGGTGGGTCACGGCTCCGGATGGCGGC
 
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rJMSF016L03-          GGAAGTGCTCGGCGATTGCGATGGCGGCTCTGCTCGGA                      
JMSF016L03+           GGAAGTGCTCGGCGATTGCGATGGCGGCTCTGCTCGGAGTCGGAGACGGCGTATTTTGGC
JMFN006C23+           GGAAGTGCTCGGCGATTGCGATGGCGGCTCTGCTCGGAGTCGGAGACGGCGTATTTTGGC
                      ____________________________________________________________
consensus             GGAAGTGCTCGGCGATTGCGATGGCGGCTCTGCTCGGAGTCGGAGACGGCGTATTTTGGC
 
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JMSF016L03+           TGAGAAGAGAAAGTAGGAGGGATGCCGGTGCTGGGTGACGGTGATGTGCGGTGGTGCTGG
JMFN006C23+           TGAGAAGAGAAAGTAGGAGGGATGCCGGTGCTGGGTGACGGTGATGTGCGGTGGTGCTGG
                      ____________________________________________________________
consensus             TGAGAAGAGAAAGTAGGAGGGATGCCGGTGCTGGGTGACGGTGATGTGCGGTGGTGCTGG
 
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JMSF016L03+           CCCCGGCCGTTTTTCCTTTCCGGCAACTCCGTTCGGCGTCTCTCTCTCTT          
JMFN006C23+           CCCCGGCCGTTTTTCCTTTCCGGCAACTCCGTTCGGCGTCTCTCTCTCTTGCCTGACTGG
                      ____________________________________________________________
consensus             CCCCGGCCGTTTTTCCTTTCCGGCAACTCCGTTCGGCGTCTCTCTCTCTTGCCTGACTGG