Contig 008905:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003B01Sequence642008905 (4)ref|XP_004252368.1|5e-86PREDICTED: 60S ribosomal protein L28-1 [Solanum lycopersicum]
JMSF002P21Sequence222008905 (4)gb|EYU45845.1|3e-27hypothetical protein MIMGU_mgv1a015892mg [Erythranthe guttata]725000081 (3)ref|XP_009591144.1|142PREDICTED: uncharacterized protein LOC104088205 [Nicotiana tomentosiformis]
JMSF038E12Sequence704008905 (4)ref|XP_004252368.1|2e-85PREDICTED: 60S ribosomal protein L28-1 [Solanum lycopersicum]659008905 (4)ref|XP_004252368.1|1e-85PREDICTED: 60S ribosomal protein L28-1 [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF038E12+                                                           TTTTTTTTTTAG
                      ____________________________________________________________
consensus                                                             TTTTTTTTTTAG
 
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JMSF038E12+           GAAAATGTATATAGTTTGCAGGCATAAAAGCATGGGTTGAATGGTATAAGGTCCAAATAT
                      ____________________________________________________________
consensus             GAAAATGTATATAGTTTGCAGGCATAAAAGCATGGGTTGAATGGTATAAGGTCCAAATAT
 
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JMSF038E12+           ACTGTCTAATATTACTCAAAATATGATGATATTATCTCCACAAGGACCACAGCTAAAAGG
                      ____________________________________________________________
consensus             ACTGTCTAATATTACTCAAAATATGATGATATTATCTCCACAAGGACCACAGCTAAAAGG
 
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JMSF038E12+           AGAAGAACAAAAATGCAAAATCCAAAACTGGACTGGATGATCAAAGGATGATGATACTTA
                      ____________________________________________________________
consensus             AGAAGAACAAAAATGCAAAATCCAAAACTGGACTGGATGATCAAAGGATGATGATACTTA
 
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JMSF038E12+           AACGCTGCAGTTCTCATACAGCCTGCCTGTTCCTCTTCTTGACACCAGATTTTGCGACCT
rJMSF038E12-                 CAGTTCTCATACAGCCTGCCTGTTCCTCTTCTTGACACCAGATTTTGCGACCT
JMFN003B01+                  CAGTTCTCATACAGCCTGCCTGTTCCTCTTCTTGACACCAGATTTTGCGACCT
                      ____________________________________________________________
consensus             AACGCTGCAGTTCTCATACAGCCTGCCTGTTCCTCTTCTTGACACCAGATTTTGCGACCT
 
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JMSF038E12+           TGAGGCTCCTGTTTACAACGCTCAACCTTGCAAGGGCGGCCTTCTTCAAGTCTGGCCTAT
rJMSF038E12-          TGAGGCTCCTGTTTACAACGCTCAACCTTGCAAGGGCGGCCTTCTTCAAGTCTGGCCTAT
JMFN003B01+           TGAGGCTCCTGTTTACAACGCTCAACCTTGCAAGGGCGGCCTTCTTCAAGTCTGGCCTAT
                      ____________________________________________________________
consensus             TGAGGCTCCTGTTTACAACGCTCAACCTTGCAAGGGCGGCCTTCTTCAAGTCTGGCCTAT
 
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JMSF038E12+           AATAGTTATCTGCAACCTGGCTGATAACAGCCTTGGCCATGCGGCGGAATTCCTTCTTCA
rJMSF038E12-          AATAGTTATCTGCAACCTGGCTGATAACAGCCTTGGCCATGCGGCGGAATTCCTTCTTCA
JMFN003B01+           AATAGTTATCTGCAACCTGGCTGATAACAGCCTTGGCCATGCGGCGGAATTCCTTCTTCA
                      ____________________________________________________________
consensus             AATAGTTATCTGCAACCTGGCTGATAACAGCCTTGGCCATGCGGCGGAATTCCTTCTTCA
 
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JMSF038E12+           TGACAGACTTGTTAAGCAAGTTAGCAGGCTTGTTCTGCTTTTTGGTCTTTGTTGTAGCAA
rJMSF038E12-          TGACAGACTTGTTAAGCAAGTTAGCAGGCTTGTTCTGCTTTTTGGTCTTTGTTGTAGCAA
JMFN003B01+           TGACAGACTTGTTAAGCAAGTTAGCAGGCTTGTTCTGCTTTTTGGTCTTTGTTGTAGCAA
                      ____________________________________________________________
consensus             TGACAGACTTGTTAAGCAAGTTAGCAGGCTTGTTCTGCTTTTTGGTCTTTGTTGTAGCAA
 
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JMSF038E12+           GCACCACGGTTTGATCTTTTCCCCCCTGAATGGTAACAGTTTTCTTGTTTGCCAATCCAG
rJMSF038E12-          GCACCACGGTTTGATCTTTTCCCCCCTGAATGGTAACAGTTTTCTTGTTTGCCAATCCAG
JMSF002P21+                                                               CAATCCAG
JMFN003B01+           GCACCACGGTTTGATCTTTTCCCCCCTGAATGGTAACAGTTTTCTTGTTTGCCAATCCAG
                      ____________________________________________________________
consensus             GCACCACGGTTTGATCTTTTCCCCCCTGAATGGTAACAGTTTTCTTGTTTGCCAATCCAG
 
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JMSF038E12+           AGTGCTTGTATGAGTGAAGATTGCAGAGATTGTTGGGCTCTTTGCTAAACGTAACACCAG
rJMSF038E12-          AGTGCTTGTATGAGTGAAGATTGCAGAGATTGTTGGGCTCTTTGCTAAACGTAACACCAG
JMSF002P21+           AGTGCTTGTATGAGTGAAGATTGCAGAGATTGTTGGGCTCTTTGCTAAACGTAACACCAG
JMFN003B01+           AGTGCTTGTATGAGTGAAGATTGCAGAGATTGTTGGGCTCTTTGCTAAACGTAACACCAG
                      ____________________________________________________________
consensus             AGTGCTTGTATGAGTGAAGATTGCAGAGATTGTTGGGCTCTTTGCTAAACGTAACACCAG
 
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JMSF038E12+           CGGTGCCATCACCGAACTCCTTAACCAAAAAGGAGTTATTTTTCTTCACGATCTCCCACA
rJMSF038E12-          CGGTGCCATCACCGAACTCCTTAACCAAAAAGGAGTTATTTTTCTTCACGATCTCCCACA
JMSF002P21+           CGGTGCCATCACCGAACTCCTTAACCAAAAAGGAGTTATTTTTCTTCACGATCTCCCACA
JMFN003B01+           CGGTGCCATCACCGAACTCCTTAACCAAAAAGGAGTTATTTTTCTTCACGATCTCCCACA
                      ____________________________________________________________
consensus             CGGTGCCATCACCGAACTCCTTAACCAAAAAGGAGTTATTTTTCTTCACGATCTCCCACA
 
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JMSF038E12+           CCAGCTGCCCCGGTACCGTCGCCATT                                  
rJMSF038E12-          CCAGCTGCCCCGGTACCGTCGCCATT                                  
JMSF002P21+           CCAGCTGCCCCGGTACCGTCGCCATT                                  
JMFN003B01+           CCAGCTGCCCCGGTACCGTCGCCATTTCGAGAGATTGGAGAAGAGACAACAACGATTTTG
                      ____________________________________________________________
consensus             CCAGCTGCCCCGGTACCGTCGCCATTTCGAGAGATTGGAGAAGAGACAACAACGATTTTG