| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF013A10 | Sequence | 471 | 008900 (4) | ref|XP_007034646.1| | 9e-61 | E1 C-terminal related 1 isoform 2, partial [Theobroma cacao] gb|EOY05572.1| E1 C | |||||
| JMFF026P16 | Sequence | 527 | 008900 (4) | ref|XP_009779051.1| | 2e-73 | PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Nicotiana sylvestris] | 711 | 012799 (4) | ref|XP_009587145.1| | 2e-52 | PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Nicotiana tomentosifor |
| JMFF051F12 | Sequence | 557 | 008900 (4) | ref|XP_007034646.1| | 4e-69 | E1 C-terminal related 1 isoform 2, partial [Theobroma cacao] gb|EOY05572.1| E1 C | 600 | 012799 (4) | ref|XP_009587145.1| | 5e-25 | PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Nicotiana tomentosifor |
| JMSF001J07 | Sequence | 266 | 008900 (4) | ref|XP_006349226.1| | 1e-13 | PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like isoform X1 [Solanu | 727 | 012799 (4) | ref|XP_009779051.1| | 1e-66 | PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFF026P16+ TAATTGTTTCTTCTATTGGGTTGTCATCAGAGTCGTACT
JMFF051F12+ GTCATCAGAGTCGTACT
____________________________________________________________
consensus TAATTGTTTCTTCTATTGGGTTGTCATCAGAGTCGTACT
. : . : . : . : . : . :
JMFF013A10+ ACAGCATTTATGTAGCTNCGAGCCTCCACAGAATCAAGGCCAA
JMFF026P16+ CTAGGAATCCGCAGGCCACAGCATTTATGTAGCTCCGAGCCTCCACAGAATCAAGGCCAA
JMFF051F12+ CTAGGAATCCGCAGGCCACAGCATTTATGTAGCTCCGAGCCTCCACAGAATCAAGGCCAA
____________________________________________________________
consensus CTAGGAATCCGCAGGCCACAGCATTTATGTAGCTCCGAGCCTCCACAGAATCAAGGCCAA
. : . : . : . : . : . :
JMFF013A10+ GAACAATAATGTGGAAATCACTATAGAAGCTTAATGGTTTATCCTCAATTCGGCAGAAAT
JMFF026P16+ GAACAATAATGTGGAAATCACTATAGAAGCTTAATGGTTTATCCTCAATTCGGCAGAAAT
JMFF051F12+ GAACAATAATGTGGAAATCACTATAGAAGCTTAATGGTTTATCCTCAATTCGGCAGAAAT
____________________________________________________________
consensus GAACAATAATGTGGAAATCACTATAGAAGCTTAATGGTTTATCCTCAATTCGGCAGAAAT
. : . : . : . : . : . :
JMFF013A10+ GTGGTATGATATTCACACCACTAACTCTTTCCATCACTCGCTTTGCAGCAACTTCAGCCT
JMFF026P16+ GTGGTATGATATTCACACCACTAACTCTTTCCATCACTCGCTTTGCAGCAACTTCAGCCT
JMFF051F12+ GTGGTATGATATTCACACCACTAACTCTTTCCATCACTCGCTTTGCAGCAACTTCAGCCT
____________________________________________________________
consensus GTGGTATGATATTCACACCACTAACTCTTTCCATCACTCGCTTTGCAGCAACTTCAGCCT
. : . : . : . : . : . :
JMFF013A10+ TTGGCTTCCCCACATCTTCAAGTCTGAAGAGAAATTGGCGATTGAGATTGGTGACTTCGA
JMFF026P16+ TTGGCTTCCCCACATCTTCAAGTCTGAAGAGAAATTGGCGATTGAGATTGGTGACTTCGA
JMSF001J07+ AGATTGGTGACTTCGA
JMFF051F12+ TTGGCTTCCCCACATCTTCAAGTCTGAAGAGAAATTGGCGATTGAGATTGGTGACTTCGA
____________________________________________________________
consensus TTGGCTTCCCCACATCTTCAAGTCTGAAGAGAAATTGGCGATTGAGATTGGTGACTTCGA
. : . : . : . : . : . :
JMFF013A10+ TTCTGTCCATATCAATCACCTCAAGGTTTTGAAAACCCGATAGAGCCAAGTCCTTGAGCA
JMFF026P16+ TTCTGTCCATATCAATCACCTCAAGGTTTTGAAAACCCGATAGAGCCAAGTCCTTGAGCA
JMSF001J07+ TTCTGTCCATATCAATCACCTCAAGGTTTTGAAAACCCGATAGAGCCAAGTCCTTGAGCA
JMFF051F12+ TTCTGTCCATATCAATCACCTCAAGGTTTTGAAAACCCGATAGAGCCAAGTCCTTGAGCA
____________________________________________________________
consensus TTCTGTCCATATCAATCACCTCAAGGTTTTGAAAACCCGATAGAGCCAAGTCCTTGAGCA
. : . : . : . : . : . :
JMFF013A10+ ATTCACAACCCAATCCACCCGCCCCAACCACCAACAGCCTAGCAACCTCCTTGATGTCAT
JMFF026P16+ ATTCACAACCCAATCCACCCGCCCCAACCACCAACAGCCTAGCAACCTCCTTGATGTCAT
JMSF001J07+ ATTCACAACCCAATCCACCCGCCCCAACCACCAACAGCCTAGCAACCTCCTTGATGTCAT
JMFF051F12+ ATTCACAACCCAATCCACCCGCCCCAACCACCAACAGCCTAGCAACCTCCTTGATGTCAT
____________________________________________________________
consensus ATTCACAACCCAATCCACCCGCCCCAACCACCAACAGCCTAGCAACCTCCTTGATGTCAT
. : . : . : . : . : . :
JMFF013A10+ CTCTCAGCTCTTCCCCGGGCTCGAAAGCTGGCCCGACGAGGTGGCCGGGTCGGAGAAGGA
JMFF026P16+ CTCTCAGCTCTTCCCCGGGCTCGAAAGCTGGCCCGACGAGGTGGCCGGGTCGGAGAAGGA
JMSF001J07+ CTCTCAGCTCTTCCCCGGGCTCGAAAGCTGGCCCGACGAGGTGGCCGGGTCGGAGAAGGA
JMFF051F12+ CTCTCAGCTCTTCCCCGGGCTCGAAAGCTGGCCCGACGAGGTGGCCGGGTCGGAGAAGGA
____________________________________________________________
consensus CTCTCAGCTCTTCCCCGGGCTCGAAAGCTGGCCCGACGAGGTGGCCGGGTCGGAGAAGGA
. : . : . : . : . : . :
JMFF013A10+ GCTTGTCGAGGTCGCGCGATCGGCTTTGGACGGCGGAATCCGCCATTGATGGAGTACAGA
JMFF026P16+ GCTTGTCGAGGTCGCGCGATCGGCTTTGGACGGCGGAATCCGCCATTGATGGAGTACAGA
JMSF001J07+ GCTTGTCGAGGTCGCGCGATCGGCTTTGGACGGCGGAATCCGCCATTGATGGAGTACAGA
JMFF051F12+ GCTTGTCGAGGTCGCGCGATCGGCTTTGGACGGCGGAATCCGCCATTGATGGAGTACAGA
____________________________________________________________
consensus GCTTGTCGAGGTCGCGCGATCGGCTTTGGACGGCGGAATCCGCCATTGATGGAGTACAGA
. : . : . : . : . : . :
JMFF013A10+ ATTAGTAT
JMFF026P16+ ATTAGTAT
JMSF001J07+ ATTAGTAT
JMFF051F12+ ATTAGTATCGAAGTAGCAGAAGGATGTATGGTTTCGCGTTTATTGGGTATGGTGGCTTGT
____________________________________________________________
consensus ATTAGTATCGAAGTAGCAGAAGGATGTATGGTTTCGCGTTTATTGGGTATGGTGGCTTGT