Contig 008899:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032H23Sequence427008899 (10)gb|KHG30732.1|1e-52Transcription initiation factor TFIID subunit taf73 [Gossypium arboreum] gb|KJB
JMFF051D09Sequence557008899 (10)gb|KHG30732.1|2e-74Transcription initiation factor TFIID subunit taf73 [Gossypium arboreum] gb|KJB522008899 (10)gb|KHG30732.1|3e-60Transcription initiation factor TFIID subunit taf73 [Gossypium arboreum] gb|KJB
JMFN003J08Sequence148008899 (10)gb|KHG30732.1|4e-20Transcription initiation factor TFIID subunit taf73 [Gossypium arboreum] gb|KJB
JMFN005A07Sequence620008899 (10)gb|KHG30732.1|5e-74Transcription initiation factor TFIID subunit taf73 [Gossypium arboreum] gb|KJB
JMFN010J19Sequence623008899 (10)gb|KHG30732.1|5e-74Transcription initiation factor TFIID subunit taf73 [Gossypium arboreum] gb|KJB
JMFN043A20Sequence519008899 (10)gb|KHG30732.1|2e-58Transcription initiation factor TFIID subunit taf73 [Gossypium arboreum] gb|KJB
JMSF005K20Sequence317008899 (10)gb|KHG30732.1|1e-48Transcription initiation factor TFIID subunit taf73 [Gossypium arboreum] gb|KJB
JMSF030N14Sequence547008899 (10)gb|KHG30732.1|3e-54Transcription initiation factor TFIID subunit taf73 [Gossypium arboreum] gb|KJB677008899 (10)gb|KHG30732.1|1e-73Transcription initiation factor TFIID subunit taf73 [Gossypium arboreum] gb|KJB

Alignment

This contig is upended


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JMFN043A20-                                  GAGAACTAGTCTCGAGXXXXXXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus                                    GAGAACTAGTCTCGAGNNNNNNNNNNNNNNNNNNNNN
 
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JMFN043A20-           XXXXXAACACAAGAATAGCTGTATTATTGTAGCAATCAAAGTTAAGCACTGAATTGTCAG
JMFN005A07+                          TAGCTGTATTATTGTAGCAATCAAAGTTAAGCACTGAATTGTCAG
JMFN010J19+                          TAGCTGTATTATTGTAGCAATCAAAGTTAAGCACTGAATTGTCAG
rJMFF051D09-               AACACAAGAATAGCTGTATTATTGTAGCAATCAAAGTTAAGCACTGAATTGTCAG
rJMSF030N14-               AACACAAGAATAGCTGTATTATTGTAGCAATCAAAGTTAAGCACTGAATTGTCAG
                      ____________________________________________________________
consensus             NNNNNAACACAAGAATAGCTGTATTATTGTAGCAATCAAAGTTAAGCACTGAATTGTCAG
 
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JMFN043A20-           CTTCAAAAACTTTTTTGAGGGAAACAATCTTGATGTAGGAGTGTCAGCTCTCACTCAGAT
JMFN005A07+           CTTCAAAAACTTTTTTGAGGGAAACAATCTTGATGTAGGAGTGTCAGCTCTCACTCAGAT
JMFN010J19+           CTTCAAAAACTTTTTTGAGGGAAACAATCTTGATGTAGGAGTGTCAGCTCTCACTCAGAT
rJMFF051D09-          CTTCAAAAACTTTTTTGAGGGAAACAATCTTGATGTAGGAGTGTCAGCTCTCACTCAGAT
rJMSF030N14-          CTTCAAAAACTTTTTTGAGGGAAACAATCTTGATGTAGGAGTGTCAGCTCTCACTCAGAT
JMSF030N14+                                                               ACTCAGAT
JMFF051D09+                                                     GTCAGCTCTCACTCAGAT
                      ____________________________________________________________
consensus             CTTCAAAAACTTTTTTGAGGGAAACAATCTTGATGTAGGAGTGTCAGCTCTCACTCAGAT
 
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JMFN043A20-           CATCTTAATAAACACAGAAAGCTTATAGCTATCATCAACTTGGCTAAATAATGTATGATC
JMFN005A07+           CATCTTAATAAACACAGAAAGCTTATAGCTATCATCAACTTGGCTAAATAATGTATGATC
JMFN010J19+           CATCTTAATAAACACAGAAAGCTTATAGCTATCATCAACTTGGCTAAATAATGTATGATC
rJMFF051D09-          CATCTTAATAAACACAGAAAGCTTATAGCTATCATCAACTTGGCTAAATAATGTATGATC
rJMSF030N14-          CATCTTAATAAACACAGAAAGCTTATAGCTATCATCAACTTGGCTAAATAATGTATGATC
JMSF030N14+           CATCTTAATAAACACAGAAAGCTTATAGCTATCATCAACTTGGCTAAATAATGTATGATC
JMFF051D09+           CATCTTAATAAACACAGAAAGCTTATAGCTATCATCAACTTGGCTAAATAATGTATGATC
                      ____________________________________________________________
consensus             CATCTTAATAAACACAGAAAGCTTATAGCTATCATCAACTTGGCTAAATAATGTATGATC
 
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JMFN043A20-           AACTGTTCTTTTTCAAGGATAGTAACCAGTGAATGTAAAACCTCTTCCTACAATCTCTCC
JMFN005A07+           AACTGTTCTTTTTCAAGGATAGTAACCAGTGAATGTAAAACCTCTTCCTACAATCTCTCC
JMFN010J19+           AACTGTTCTTTTTCAAGGATAGTAACCAGTGAATGTAAAACCTCTTCCTACAATCTCTCC
rJMFF051D09-          AACTGTTCTTTTTCAAGGATAGTAACCAGTGAATGTAAAACCTCTTCCTACAATCTCTCC
rJMSF030N14-          AACTGTTCTTTTTCAAGGATAGTAACCAGTGAATGTAAAACCTCTTCCTACAATCTCTCC
JMSF030N14+           AACTGTTCTTTTTCAAGGATAGTAACCAGTGAATGTAAAACCTNTTCCTACAATNTTTCC
JMFF032H23+                                                                    TCC
JMFF051D09+           AACTGTTCTTTTTCAAGGATAGTAACCAGTGAATGTAAAACCTCTTCCTACAATCTCTCC
                      ____________________________________________________________
consensus             AACTGTTCTTTTTCAAGGATAGTAACCAGTGAATGTAAAACCTCTTCCTACAATCTCTCC
 
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JMFN043A20-           AGCACAAAACCATGCAAAGCACTCGAGCCCAAATAAAGCTGCAAT-ACCGGCATGTTCAA
JMFN005A07+           AGCACAAAACCATGCAAAGCACTCGAGCCCAAATAAAGCTGCAAT-ACCGGCATGTTCAA
JMFN010J19+           AGCACAAAACCATGCAAAGCACTCGAGCCCAAATAAAGCTGCAAT-ACCGGCATGTTCAA
JMFN003J08+                                   GAGCCCAAATAAAGCTGCAATGACCGGCATGTTCAA
rJMFF051D09-          AGCACAAAACCATGCAAAGCACTCGAGCCCAAATAAAGCTGCAAT-ACCGGCATGTTCAA
JMSF005K20+                                                      AT-ACCGGCATGTTCAA
rJMSF030N14-          AGCACAAAACCATGCAAAGCACTCGAGCCCAAATAAAGCTGCAAT-ACCGGCATGTTCAA
JMSF030N14+           AGCACAAAACCATGCAAAGCACTCGAGCCCAAATAAAGNTGCAAN-ACCGGCATGTTCAA
JMFF032H23+           AGCNCAAAACCATGCAAAGCNCTCGAGCCCAAATAAAGCTGCAAT-ACCGGCATGTTCAA
JMFF051D09+           AGCACAAAACCATGCAAAGCACTCGAGCCCAAATAAAGCTGCAAT-ACCGGCATGTTCAA
                      ____________________________________________________________
consensus             AGCACAAAACCATGCAAAGCACTCGAGCCCAAATAAAGCTGCAAT-ACCGGCATGTTCAA
 
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JMFN043A20-           CTTTCAACTCCTGCCTATTCTTCCACATGTTCTTCACATAATCCAGCTCCTTCCAAAATG
JMFN005A07+           CTTTCAACTCCTGCCTATTCTTCCACATGTTCTTCACATAATCCAGCTCCTTCCAAAATG
JMFN010J19+           CTTTCAACTCCTGCCTATTCTTCCACATGTTCTTCACATAATCCAGCTCCTTCCAAAATG
JMFN003J08+           CTTTCAACTCCTGCCTATTCTTCCACATGTTCTTCACATAATCCAGCTCCTTCCAAAATG
rJMFF051D09-          CTTTCAACTCCTGCCTATTCTTCCACATGTTCTTCACATAATCCAGCTCCTTCCAAAATG
JMSF005K20+           CTTTCAACTCCTGCCTATTNTTCCACATGTTCTTCACATAATCCAGCTCCTTCCAAAATG
rJMSF030N14-          CTTTCAACTCCTGCCTATTCTTCCACATGTTCTTCACATAATCCAGCTCCTTCCAAAATG
JMSF030N14+           CTTTCAACTCCTGCCTATTTTTCCACATGTTNTTCACATAATCCAGCTCCTTCCAAAATG
JMFF032H23+           CTTTCAACTCCTGCCTATTTTTCCNCATGTTTTTCACATAATCCAGCTCCTTCCAAAATG
JMFF051D09+           CTTTCAACTCCTGCCTATTCTTCCACATGTTCTTCACATAATCCAGCTCCTTCCAAAATG
                      ____________________________________________________________
consensus             CTTTCAACTCCTGCCTATTCTTCCACATGTTCTTCACATAATCCAGCTCCTTCCAAAATG
 
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JMFN043A20-           CTTCATTCCGCCCAGGAATGCTAGCAAGGCGAGTGTAAAACAGCTGCTTAGATAACTCAG
JMFN005A07+           CTTCATTCCGCCCAGGAATGCTAGCAAGGCGAGTGTAAAACAGCTGCTTAGATAACTCAG
JMFN010J19+           CTTCATTCCGCCCAGGAATGCTAGCAAGGCGAGTGTAAAACAGCTGCTTAGATAACTCAG
JMFN003J08+           CTTCATTCCGCCCAGGAATGCTAGCAAGGCGAGTGTAAAACAGCTGCTTAGA        
rJMFF051D09-          CTTCATTCCGCCCAGGAATGCTAGCAAGGCGAGTGTAAAACAGCTGCTTAGATAACTCAG
JMSF005K20+           CTTCATTCCGCCCAGGAATGCTAGCAAGGCGAGTGTAAAACAGCTGCTTAGATAACTCAG
rJMSF030N14-          CTTCATTCCGCCCAGGAATGCTAGCAAGGCGAGTGTAAAACAGCTGCTTAGATAACTCAG
JMSF030N14+           NTTCATTCCGCCCAGGAATGCTAGCAAGGNGAGNGTAAAACAGCTGCTTAGATAACTCAG
JMFF032H23+           CTTCATTCCGCCCAGGAATGCTAGCAAGGNGAGNGTAAAACAGCTGCTTAGATAACTCAG
JMFF051D09+           CTTCATTCCGCCCAGGAATGCTAGCAAGGCGAGTGTAAAACAGCTGCTTAGATAACTCAG
                      ____________________________________________________________
consensus             CTTCATTCCGCCCAGGAATGCTAGCAAGGCGAGTGTAAAACAGCTGCTTAGATAACTCAG
 
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JMFN043A20-           AGCACTTCTCCACAGTCGGAGGCTCAACAATATACTGTTTGTTCTGCTCCAATGCCTGCC
JMFN005A07+           AGCACTTCTCCACAGTCGGAGGCTCAACAATATACTGTTTGTTCTGCTCCAATGCCTGCC
JMFN010J19+           AGCACTTCTCCACAGTCGGAGGCTCAACAATATACTGTTTGTTCTGCTCCAATGCCTGCC
rJMFF051D09-          AGCACTTCTCCACAGTCGGAGGCTCAACAATATACTGTTTGTTCTGCTCCAATGCCTGCC
JMSF005K20+           AGCACTTCTCCACAGTCGGAGGCTCAACAATATACTGTTTGTTNTGCTCCAATGCCTGCC
rJMSF030N14-          AGCACTTCTCCACAGTCGGAGGCTCAACAATATACTGTTTGTTCTGCTCCAATGCCTGCC
JMSF030N14+           AGCACTTNTCCACAGTNGGNGGCTCAACAATATACTGTTTGTTTTGCTCCAANGCCTGCC
JMFF032H23+           AGCACTTNTCCNCAGTCGGAGGCTCAACAATATACTGTTTGTTTTGCTCCAATGCCTGCC
JMFF051D09+           AGCACTTCTCCACAGTCGGAGGCTCAACAATATACTGTTTGTTCTGCTCCAATGCCTGCC
                      ____________________________________________________________
consensus             AGCACTTCTCCACAGTCGGAGGCTCAACAATATACTGTTTGTTCTGCTCCAATGCCTGCC
 
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JMFN043A20-           TGT                                                         
JMFN005A07+           TGTAGTAAGTCGAACCATTCTTGGCAACAAACTTTGTTAATTCACAAGCCTTTGCTGAAA
JMFN010J19+           TGTAGTAAGTCGAACCATTCTTGGCAACAAACTTTGTTAATTCACAAGCCTTTGCTGAAA
rJMFF051D09-          TGTAGTAAGTC                                                 
JMSF005K20+           TGTAGTAAGTCGAACCATTCTTGGCAACAAACTTTGCTAATTCACAAGCCTTTGCTGAAA
rJMSF030N14-          TGTAGTAAGTCGAACCATTCTTGGCAACAAACTTTGTTAATTCACAAGCCTTTGCTGAAA
JMSF030N14+           TGTAGTAAGTCGAACCNTTNTTGGCAACAAACTTTGTTAATTCNCAAGCCTTTGNTGAAA
JMFF032H23+           TGTAGTAAGTCGAACCATTNTTGGCAACAAACTTTGTTAATTCNCAAGCCTTTGNTGAAA
JMFF051D09+           TGTAGTAAGTCGAACCATTCTTGGCAACAAACTTTGTTAATTCACAAGCCTTTGCTGAAA
                      ____________________________________________________________
consensus             TGTAGTAAGTCGAACCATTCTTGGCAACAAACTTTGTTAATTCACAAGCCTTTGCTGAAA
 
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JMFN005A07+           CTTGCTGAAGCTTGGACGCCATTGTTGCCCCCTGAGTTTTTTTTTTTATCCAGAAGGAAG
JMFN010J19+           CTTGCTGAAGCTTGGACGCCATTGTTGCCCCCTGAGTTTTTTTTTTTATCCAGAAGGAAG
JMSF005K20+           CTTGCTGAAGCTTGGACGCCATTGTTGCCCCCTGAGTTTTTTTTTT              
rJMSF030N14-          CTTGCTGAAGCTTGGACGCCATTGTTGCCCCCTGAGTTTTTTTTTTTATCCAGAAGGAAG
JMSF030N14+           CTTGCTGAAGCTTGGACGCCATTGTTGCCCCCTGAGTTTTTTTTTTTATCCAGAAGGAAG
JMFF032H23+           CTTGCTGAAGCTTGGACGCCATTGTTGCCCCCTGAGTTTTTTTTTTTATCCAGAAGGAAG
JMFF051D09+           CTTGCTGAAGCTTGGACGCCATTGTTGCCCCCTGAGTTTTTTTTTTTATCCAGAAGGAAG
                      ____________________________________________________________
consensus             CTTGCTGAAGCTTGGACGCCATTGTTGCCCCCTGAGTTTTTTTTTTTATCCAGAAGGAAG
 
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JMFN005A07+           CTCAGGGTCGTAAACCCTAACCCGCTGAGGTATTGA                        
JMFN010J19+           CTCAGGGTCGTAAACCCTAACCCGCTGAGGTATTGACTA                     
rJMSF030N14-          CTCAGGGTCGTAAACCCTAACCCGCTGAGGTATTGACTATTGAG                
JMSF030N14+           CTCAGGGTCGTAAACCCTAACCCGCTGAGGTATTGACTATTGAGAAACTCAGATTAATCC
JMFF032H23+           CTCAGGGTCGTAAACCCTAACCCGCTGAGGTATTGACTATTGAGAAACTCAGATTAATCC
JMFF051D09+           CTCAGGGTCGTAAACCCTAACCCGCTGAGGTATTGACTATTGAGAAACTCAGATTAATCC
                      ____________________________________________________________
consensus             CTCAGGGTCGTAAACCCTAACCCGCTGAGGTATTGACTATTGAGAAACTCAGATTAATCC