Contig 008898:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039B17Sequence588008898 (4)ref|XP_006407422.1|6e-13hypothetical protein EUTSA_v10021370mg [Eutrema salsugineum] gb|ESQ48875.1| hypo
JMFF050N23Sequence577008898 (4)emb|CDY47923.1|2e-09BnaAnng09550D [Brassica napus]597008898 (4)emb|CDP10564.1|1e-15unnamed protein product [Coffea canephora]
JMFN009G05Sequence601008898 (4)emb|CDY47923.1|1e-09BnaAnng09550D [Brassica napus]

Alignment

This contig is upended


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rJMFF050N23-            GCTAAGATAGGAATTTTTCTTGAACTGGGAATTATTACATTTCTGTATAGTCACAATT
rJMFF039B17-                        ATTTTTCTTGAACTGGGAATTATTACATTTCTGTATAGTCACAATT
                      ____________________________________________________________
consensus               GCTAAGATAGGAATTTTTCTTGAACTGGGAATTATTACATTTCTGTATAGTCACAATT
 
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rJMFF050N23-          GAGATATATCAGTCCTTTGAGAGGGACTTCTCCAGAATCCGGCGCCGGAAAACTTGTTCC
rJMFF039B17-          GAGATATATCAGTCCTTTGAGAGGGACTTCTCCAGAATCCGGCGCCGGAAAACTTGTTCC
                      ____________________________________________________________
consensus             GAGATATATCAGTCCTTTGAGAGGGACTTCTCCAGAATCCGGCGCCGGAAAACTTGTTCC
 
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rJMFF050N23-          ACATTTCCCTTTCCAACTCGACCGCATCTTCGTCCGCCTCCACGGCGGCGTCCACATCGA
rJMFF039B17-          ACATTTCCCTTTCCAACTCGACCGCATCTTCGTCCGCCTCCACGGCGGCGTCCACATCGA
JMFN009G05+                                                     CGGCGGCGTCCACATCGA
                      ____________________________________________________________
consensus             ACATTTCCCTTTCCAACTCGACCGCATCTTCGTCCGCCTCCACGGCGGCGTCCACATCGA
 
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rJMFF050N23-          GGTGGCGGTGCATGCGCATCACCGAATCATCCCAGAAGCTGTGCCGCGTCGACGCCGGAA
rJMFF039B17-          GGTGGCGGTGCATGCGCATCACCGAATCATCCCAGAAGCTGTGCCGCGTCGACGCCGGAA
JMFN009G05+           GGTGGCGGTGCATGCGCATCACCGAATCATCCCAGAAGCTGTGCCGCGTCGACGCCGGAA
JMFF050N23+                                  GAATCATCCCAGAAGCTGTGCCGCGTCGACGCCGGAA
                      ____________________________________________________________
consensus             GGTGGCGGTGCATGCGCATCACCGAATCATCCCAGAAGCTGTGCCGCGTCGACGCCGGAA
 
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rJMFF050N23-          ACACCCCATTCTTCGCCCGCCTGCGCCGCCGCCTCCTCAGAGCTTTCCGGCACAGCTCCG
rJMFF039B17-          ACACCCCATTCTTCGCCCGCCTGCGCCGCCGCCTCCTCANAGCTTTCCGGCACAGCTCCG
JMFN009G05+           ACACCCCATTCTTCGCCCGCCTGCGCCGCCGCCTCCTCAGAGCTTTCCGGCACAGCTCCG
JMFF050N23+           ACACCCCATTCTTCGCCCGCCTGCGCCGCCGCCTCCTCAGAGCTTTCCGGCACAGCTCCG
                      ____________________________________________________________
consensus             ACACCCCATTCTTCGCCCGCCTGCGCCGCCGCCTCCTCAGAGCTTTCCGGCACAGCTCCG
 
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rJMFF050N23-          ACGGGACCTTGTAAAAGGCCTGCACCAGCATCTCCACCAGGACGCAGGGGATGCAGCACC
rJMFF039B17-          ACGGGACCTTGTAAAAGGCCTGCACCAGCATCTCCACCAGGACGCAGGGGATGCAGCACC
JMFN009G05+           ACGGGACCTTGTAAAAGGCCTGCACCAGCATCTCCACCAGGACGCAGGGGATGCAGCACC
JMFF050N23+           ACGGGACCTTGTAAAAGGCCTGCACCAGCATCTCCACCAGGACGCAGGGGATGCAGCACC
                      ____________________________________________________________
consensus             ACGGGACCTTGTAAAAGGCCTGCACCAGCATCTCCACCAGGACGCAGGGGATGCAGCACC
 
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rJMFF050N23-          ACACCGCCGCGCACTCCGCCGTGGTCCCTCCGATCACCTCCGCCACCCGCACCCTTCTCC
rJMFF039B17-          ACACCGCCGCGCACTCCGCCGTGGTCCCTCCGATCACCTCCGCCACCCGCACCCTTCTCC
JMFN009G05+           ACACCGCCGCGCACTCCGCCGTGGTCCCTCCGATCACCTCCGCCACCCGCACCCTTCTCC
JMFF050N23+           ACACCGCCGCGCACTCCGCCGTGGTCCCTCCGATCACCTCCGCCACCCGCACCCTTCTCC
                      ____________________________________________________________
consensus             ACACCGCCGCGCACTCCGCCGTGGTCCCTCCGATCACCTCCGCCACCCGCACCCTTCTCC
 
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rJMFF050N23-          GGCGCCGCCCACACGAATAGTCCTGCTCCGCCAGCAACGGCGGCCCCCGCTGCTTTTCCA
rJMFF039B17-          GGCGCCGCCCACACGAATAGTCCTGCTCCGCCAGCAACGGCGGCCCCCGCTGCTTTTCCA
JMFN009G05+           GGCGCCGCCCACACGAATAGTCCTGCTCCGCCAGCAACGGCGGCCCCCGCTGCTTTTCCA
JMFF050N23+           GGCGCCGCCCACACGAATAGTCCTGCTCCGCCAGCAACGGCGGCCCCCGCTGCTTTTCCA
                      ____________________________________________________________
consensus             GGCGCCGCCCACACGAATAGTCCTGCTCCGCCAGCAACGGCGGCCCCCGCTGCTTTTCCA
 
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rJMFF050N23-          TCGGTCTTGTATTGAGAAGGCGCTAAAAATGAGCGTCGATGATGGCGATCGTGGAAATTA
rJMFF039B17-          TCGGTCTTGTATTGAGAAGGCGCTAAAAATGAGCGTCGATGATGGCGATCGTGGAAATTA
JMFN009G05+           TCGGTCTTGTATTGAGAAGGCGCTAAAAATGAGCGTCGATGATGGCGATCGTGGAAATTA
JMFF050N23+           TCGGTCTTGTATTGAGAAGGCGCTAAAAATGAGCGTCGATGATGGCGATCGTGGAAATTA
                      ____________________________________________________________
consensus             TCGGTCTTGTATTGAGAAGGCGCTAAAAATGAGCGTCGATGATGGCGATCGTGGAAATTA
 
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rJMFF050N23-          ATCTGATCTCGATTGTTTAATACAGAGGATACATTTTTTTTCTTTTTTTTTTTTTT    
rJMFF039B17-          ATCTGATCTCGATTGTTTAATACAGAGGATACATTTTTTTTCTTTTTTTTTTTTTT    
JMFN009G05+           ATCTGATCTCGATTGTTTAATACAGAGGATACATTTTTTTTC-TTTTTTTTTTTTTTGGG
JMFF050N23+           ATCTGATCTCGATTGTTTAATACAGAGGATACATTTTTTTTCTTTTTTTTTTTTTTTGGG
                      ____________________________________________________________
consensus             ATCTGATCTCGATTGTTTAATACAGAGGATACATTTTTTTTCTTTTTTTTTTTTTTTGGG
 
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JMFN009G05+           TTTAATCTAAGATAAATTTGGAACGACAAGATAGATGTTCGATCGGACAACGAAAGCAGG
JMFF050N23+           TTTAATCTAAGATAAATTTGGAACGACAAGATAGATGTTCGATCGGACAACGAAAGCAGG
                      ____________________________________________________________
consensus             TTTAATCTAAGATAAATTTGGAACGACAAGATAGATGTTCGATCGGACAACGAAAGCAGG
 
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JMFN009G05+           ATCGAATTGAAAGCAAATATTTTGTTTATGATAAATGGGAAATGGAAGATATTGGGACGG
JMFF050N23+           ATCGAATTGAAAGCAAATATTTTGTTTATGATAAATGGGAAATGGAAGATATTGGGACGG
                      ____________________________________________________________
consensus             ATCGAATTGAAAGCAAATATTTTGTTTATGATAAATGGGAAATGGAAGATATTGGGACGG
 
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JMFN009G05+           CGGCCGGCGACGGGGAGGAGGAAATGGTCATCCTCCTGGCCGTG                
JMFF050N23+           CGGCCGGCGACGGGGAGGAGGAAATGGTCATCCTCCTGGCCGTGGAAGGGAAGCACAACC
                      ____________________________________________________________
consensus             CGGCCGGCGACGGGGAGGAGGAAATGGTCATCCTCCTGGCCGTGGAAGGGAAGCACAACC