| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001D22 | Sequence | 545 | 008895 (7) | dbj|BAO57279.1| | 3e-95 | alpha-expansin [Ipomoea nil] | 732 | 008895 (7) | ref|XP_010452058.1| | 9e-48 | PREDICTED: expansin-A9-like [Camelina sativa] |
| JMFF024P08 | Sequence | 492 | 008895 (7) | dbj|BAO57279.1| | 8e-82 | alpha-expansin [Ipomoea nil] | 763 | 008895 (7) | gb|AEE69071.1| | 3e-63 | expansin-4 [Petunia hybrid cultivar] |
| JMFF050F09 | Sequence | 596 | 008895 (7) | dbj|BAO57279.1| | 9e-96 | alpha-expansin [Ipomoea nil] | |||||
| JMSF001I05 | Sequence | 258 | 008895 (7) | ref|XP_009788740.1| | 9e-27 | PREDICTED: expansin-A3-like [Nicotiana sylvestris] | 715 | 008895 (7) | gb|AEE69071.1| | 2e-57 | expansin-4 [Petunia hybrid cultivar] |
This contig is upended
. : . : . : . : . : . :
rJMSF001I05- A
rJMFF001D22- CAACTTGATTACACATAATAATGAAAATAA
rJMFF024P08- CAACTTGATTACACATAATAATGAAAATAA
____________________________________________________________
consensus CAACTTGATTACACATAATAATGAAAATAA
. : . : . : . : . : . :
rJMSF001I05- TAATAGTAAACAGAGAACTGCGGGCTACAATACTTCCTACTATTTTGTTTTTACTGCAAC
rJMFF001D22- TAATAGTAAACAGAGAACTGCGGGCTACAATACTTCCTACTATTTTGTTTTTACTGCAAC
rJMFF024P08- TAATAGTAAACAGAGAACTGCGGGCTACAATACTTCCTACTATTTTGTTTTTACTGCAAC
____________________________________________________________
consensus TAATAGTAAACAGAGAACTGCGGGCTACAATACTTCCTACTATTTTGTTTTTACTGCAAC
. : . : . : . : . : . :
rJMSF001I05- CGCTTCAGCCTCTACAACTTACAATCATTTCCCCTCACTTTCATTCATTACTTAACTTCC
rJMFF001D22- CGCTTCAGCCTCTACAACTTACAATCATTTCCCCTCACTTTCATTCATTACTTAACTTCC
rJMFF024P08- CGCTTCAGCCTCTACAACTTACAATCATTTCCCCTCACTTTCATTCATTACTTAACTTCC
____________________________________________________________
consensus CGCTTCAGCCTCTACAACTTACAATCATTTCCCCTCACTTTCATTCATTACTTAACTTCC
. : . : . : . : . : . :
rJMSF001I05- AACATCTATACTTAACAAACATCACTTAAAATACCCCCACAAAATATTAGTACAATATTT
rJMFF001D22- AACATCTATACTTAACAAACATCACTTAAAATACCCCCACAAAATATTAGTACAATATTT
rJMFF024P08- AACATCTATACTTAACAAACATCACTTAAAATACCCCCACAAAATATTAGTACAATATTT
____________________________________________________________
consensus AACATCTATACTTAACAAACATCACTTAAAATACCCCCACAAAATATTAGTACAATATTT
. : . : . : . : . : . :
rJMSF001I05- CTTAACTTTTAACTCCCACACAATTCAATTTTTCTCGAGAAAAAGAGAAAAATTGAAGGT
rJMFF001D22- CTTAACTTTTAACTCCCACACAATTCAATTTTTCTCGAGAAAAAGAGAAAAATTGAAGGT
rJMFF024P08- CTTAACTTTTAACTCCCACACAATTCAATTTTTCTCGAGAAAAAGAGAAAAATTGAAGGT
____________________________________________________________
consensus CTTAACTTTTAACTCCCACACAATTCAATTTTTCTCGAGAAAAAGAGAAAAATTGAAGGT
. : . : . : . : . : . :
rJMSF001I05- GGGTAAATTACGGTAAAAAGAACTACATGTAAAAAGAAGAAAAGTATAAAGGGTAGATTT
rJMFF001D22- GGGTAAATTACGGTAAAAAGAACTACATGTAAAAAGAAGAAAAGTATAAAGGGTAGATTT
rJMFF024P08- GGGTAAATTACGGTAAAAAGAACTACATGTAAAAAGAAGAAAAGTATAAAGGGTAGATTT
____________________________________________________________
consensus GGGTAAATTACGGTAAAAAGAACTACATGTAAAAAGAAGAAAAGTATAAAGGGTAGATTT
. : . : . : . : . : . :
rJMSF001I05- CTAATTCTTAGAAATTTTCCCGTGTCAGTTTCAAGGTTTATGGACTATATGTAGTAAATT
rJMFF001D22- CTAATTCTTAGAAATTTTCCCGTGTCAGTTTCAAGGTTTATGGACTATATGTAGTAAATT
rJMFF024P08- CTAATTCTTAGAAATTTTCCCGTGTCAGTTTCAAGGTTTATGGACTATATGTAGTAAATT
____________________________________________________________
consensus CTAATTCTTAGAAATTTTCCCGTGTCAGTTTCAAGGTTTATGGACTATATGTAGTAAATT
. : . : . : . : . : . :
rJMSF001I05- AGATTCGGAAATTCTTGCCCACGTAAGTCTGGCCAAACTGCCAATTAGCGGGTGAGATGT
rJMFF001D22- AGATTCGGAAATTCTTGCCCACGTAAGTCTGGCCAAACTGCCAATTAGCGGGTGAGATGT
rJMFF024P08- AGATTCGGAAATTCTTGCCCACGTAAGTCTGGCCAAACTGCCAATTAGCGGGTGAGATGT
____________________________________________________________
consensus AGATTCGGAAATTCTTGCCCACGTAAGTCTGGCCAAACTGCCAATTAGCGGGTGAGATGT
. : . : . : . : . : . :
rJMSF001I05- TCTTTGAGGTTACTTTGCGACCATCACTGGATCGAACTCTGAAAGATAAAGCTTGACCTG
rJMFF001D22- TCTTTGAGGTTACTTTGCGACCATCACTGGATCGAACTCTGAAAGATAAAGCTTGACCTG
rJMFF024P08- TCTTTGAGGTTACTTTGCGACCATCACTGGATCGAACTCTGAAAGATAAAGCTTGACCTG
____________________________________________________________
consensus TCTTTGAGGTTACTTTGCGACCATCACTGGATCGAACTCTGAAAGATAAAGCTTGACCTG
. : . : . : . : . : . :
rJMSF001I05- AAAGCATTGCACTAGATTGCCAATTTTGCCCCCAATTGCGGCTCATGGTCAGCCATTGGG
rJMFF001D22- AAAGCATTGCACTAGATTGCCAATTTTGCCCCCAATTGCGGCTCATGGTCAGCCATTGGG
rJMFF024P08- AAAGCATTGCACTAGATTGCCAATTTTGCCCCCAATTGCGGCTCATGGTCAGCCATTGGG
____________________________________________________________
consensus AAAGCATTGCACTAGATTGCCAATTTTGCCCCCAATTGCGGCTCATGGTCAGCCATTGGG
. : . : . : . : . : . :
rJMSF001I05- TGTTGGTGCCCTTGATCCACACATTTTGGACATCACCTGCACCTGCTACGTTGGTTACTA
rJMFF001D22- TGTTGGTGCCCTTGATCCACACATTTTGGACATCACCTGCACCTGCTACGTTGGTTACTA
rJMFF024P08- TGTTGGTGCCCTTGATCCACACATTTTGGACATCACCTGCACCTGCTACGTTGGTTACTA
____________________________________________________________
consensus TGTTGGTGCCCTTGATCCACACATTTTGGACATCACCTGCACCTGCTACGTTGGTTACTA
. : . : . : . : . : . :
rJMSF001I05- TTACCAAGTTGAAGAATTGGTGACCATTGATCGTGAATCTGATTCCTCCTTGTTTTCTGC
rJMFF001D22- TTACCAAGTTGAAGAATTGGTGACCATTGATCGTGAATCTGATTCCTCCTTGTTTTCTGC
rJMFF024P08- TTACCAAGTTGAAGAATTGGTGACCATTGATCGTGAATCTGATTCCTCCTTGTTTTCTGC
JMFF001D22+ TTTCTGC
JMFF050F09+ TTTCTGC
____________________________________________________________
consensus TTACCAAGTTGAAGAATTGGTGACCATTGATCGTGAATCTGATTCCTCCTTGTTTTCTGC
. : . : . : . : . : . :
rJMSF001I05- ATGGAACCCGGCGGAAGTTGACGGGGACGATACCGGCACGGTAGGCGGCGATTT
rJMFF001D22- ATGGAACCC
rJMFF024P08- ATGGAACCCGGCGGAAGTTGACGGGGACGATACCGGCACGGTAGGCGGCGATTTTGAGGA
JMFF001D22+ ATGGAACCCGGCGGAAGTTGACGGGGACGATACCGGCACGGTAGGCGGCGATTTTGAGGA
JMFF024P08+ CGGCGATTTTGAGGA
JMFF050F09+ ATGGAACCCGGCGGAAGTTGACGGGGACGATACCGGCACGGTAGGCGGCGATTTTGAGGA
____________________________________________________________
consensus ATGGAACCCGGCGGAAGTTGACGGGGACGATACCGGCACGGTAGGCGGCGATTTTGAGGA
. : . : . : . : . : . :
rJMFF024P08- ACATAGGCAT
JMFF001D22+ ACATAGGCATGGCGAGATCGAAGTGGAGGCGGGGAGGGTTGCACCAGCCGCCATTGTCGT
JMFF024P08+ ACATAGGCATGGCGAGATCGAAGTGGAGGCGGGGAGGGTTGCACCAGCCGCCATTGTCGT
JMFF050F09+ ACATAGGCATGGCGAGATCGAAGTGGAGGCGGGGAGGGTTGCACCAGCCGCCATTGTCGT
____________________________________________________________
consensus ACATAGGCATGGCGAGATCGAAGTGGAGGCGGGGAGGGTTGCACCAGCCGCCATTGTCGT
. : . : . : . : . : . :
JMFF001D22+ TGGGCAAGGCGAAGTTGGGCGGGCAGAAGTTGGTGGCGGTGACCACAATGGACGGGTTTC
JMFF024P08+ TGGGCAAGGCGAAGTTGGGCGGGCAGAAGTTGGTGGCGGTGACCACAATGGACGGGTTTC
JMFF050F09+ TGGGCAAGGCGAAGTTGGGCGGGCAGAAGTTGGTGGCGGTGACCACAATGGACGGGTTTC
____________________________________________________________
consensus TGGGCAAGGCGAAGTTGGGCGGGCAGAAGTTGGTGGCGGTGACCACAATGGACGGGTTTC
. : . : . : . : . : . :
JMFF001D22+ CGGCGAGGCACGATCTGTCATTGTTGCATTTGATCTCGAAGCAGGCGCCGCAGCTCAGCC
JMFF024P08+ CGGCGAGGCACGATCTGTCATTGTTGCATTTGATCTCGAAGCAGGCGCCGCAGCTCAGCC
JMFF050F09+ CGGCGAGGCACGATCTGTCATTGTTGCATTTGATCTCGAAGCAGGCGCCGCAGCTCAGCC
____________________________________________________________
consensus CGGCGAGGCACGATCTGTCATTGTTGCATTTGATCTCGAAGCAGGCGCCGCAGCTCAGCC
. : . : . : . : . : . :
JMFF001D22+ CGGTGTTGAACAGCGCCGTGCTCAGCGCCGCATTGTTAACCCCATACCCCTGCGTGTACA
JMFF024P08+ CGGTGTTGAACAGCGCCGTGCTCAGCGCCGCATTGTTAACCCCATACCCCTGCGTGTACA
JMSF001I05+ CCCATACCCCTGCGTGTACA
JMFF050F09+ CGGTGTTGAACAGCGCCGTGCTCAGCGCCGCATTGTTAACCCCATACCCCTGCGTGTACA
____________________________________________________________
consensus CGGTGTTGAACAGCGCCGTGCTCAGCGCCGCATTGTTAACCCCATACCCCTGCGTGTACA
. : . : . : . : . : . :
JMFF001D22+ GATTCCCGTACCCACAAGCTCCCGCCATGGTCCCGGAGGCATCAGCGCCGCCGTAGAAGG
JMFF024P08+ GATTCCCGTACCCACAAGCTCCCGCCATGGTCCCGGAGGCATCAGCGCCGCCGTAGAAGG
JMSF001I05+ GATTCCCGTACCCACAAGCTCCCGCCATGGTCCCGGAGGCATCAGCGCCGCCGTAGAAGG
JMFF050F09+ GATTCCCGTACCCACAAGCTCCCGCCATGGTCCCGGAGGCATCAGCGCCGCCGTAGAAGG
____________________________________________________________
consensus GATTCCCGTACCCACAAGCTCCCGCCATGGTCCCGGAGGCATCAGCGCCGCCGTAGAAGG
. : . : . : . : . : . :
JMFF001D22+ TGGCGTGGGCACCCTGCCAGGGGCCGCTGGTGTAAACGCCGGGTATCCGAGCTCGAACGG
JMFF024P08+ TGGCGTGGGCACCCTGCCAGGGGCCGCCGGTGTAAACGCCGGGTATCCGAGCTCGAACGG
JMSF001I05+ TGGCGTGGGCACCCTGCCAGGGGCCGCCGGTGTAAACGCCGGGTATCCGAGCTCGAACGG
JMFF050F09+ TGGCGTGGGCACCCTGCCAGGGGCCGCCGGTGTAAACGCCGGGTATCCGAGCTCGAACGG
____________________________________________________________
consensus TGGCGTGGGCACCCTGCCAGGGGCCGCCGGTGTAAACGCCGGGTATCCGAGCTCGAACGG
. : . : . : . : . : . :
JMFF001D22+ CAGTGAGGAAACAGAAGAGAGCAATGCAGAACACCCTCAATGCCGCCATTTCCATAAACT
JMFF024P08+ CAGTGAGGAAACAGAAGAGAGCAATGCAGAACACCCTCAATGCCGCCATTTCCATAAACT
JMSF001I05+ CAGTGAGGAAACAGAAGAGAGCAATGCAGAACACCCTCAATGCCGCCATTTCCATAAACT
JMFF050F09+ CAGTGAGGAAACAGAAGAGAGCAATGCAGAACACCCTCAATGCCGCCATTTCCATAAACT
____________________________________________________________
consensus CAGTGAGGAAACAGAAGAGAGCAATGCAGAACACCCTCAATGCCGCCATTTCCATAAACT
. : . : . : . : . : . :
JMFF001D22+ TGAACTTGAACAGAGAGATTTACAGTAGAGAGAGAGAGAGATTGGGAGTTTGGGGAC
JMFF024P08+ TGAACTTGAACAGAGAGATTTACAGTAGAGAGAGAGAGAGATTGGGAGTTTGGGGAC
JMSF001I05+ TGAACTTGAACAGAGAGATTTACAGTAGAGAGAGAGAGAGATTGGGAGTTTGGGGAC
JMFF050F09+ TGAACTTGAACAGAGAGATTTACAGTAGAGAGAGAGAGAGATTGGGAGTTTGGGGACCGG
____________________________________________________________
consensus TGAACTTGAACAGAGAGATTTACAGTAGAGAGAGAGAGAGATTGGGAGTTTGGGGACCGG