Contig 008891:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044L11Sequence591008891 (4)emb|CDP00121.1|2e-15unnamed protein product [Coffea canephora]646008334 (2)
JMFF049E12Sequence385008891 (4)ref|XP_009399864.1|2e-06PREDICTED: E3 ubiquitin-protein ligase RING1-like [Musa acuminata subsp. malacc
JMFF050A21Sequence591008891 (4)emb|CDP00121.1|2e-15unnamed protein product [Coffea canephora]625008334 (2)
JMFS143H11Sequence632008891 (4)emb|CDP00121.1|8e-28unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS143H11+                     AAACTCCGAAATACTCGCTGGTAACGGCCTCAAACCCGACCCGGCACCGT
                      ____________________________________________________________
consensus                       AAACTCCGAAATACTCGCTGGTAACGGCCTCAAACCCGACCCGGCACCGT
 
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JMFS143H11+           CGTCATAGTACAACTCAAATCCCGCTCCACTACCATCGCCTCCGCCTCCGCCGCCGCCTC
                      ____________________________________________________________
consensus             CGTCATAGTACAACTCAAATCCCGCTCCACTACCATCGCCTCCGCCTCCGCCGCCGCCTC
 
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JMFS143H11+           CTTCGGCGGCGCCGCGGAGCACAATAACCGGGTTAAACGGGGAGCGGTCACCGCCATTCC
JMFF050A21+                   GCGCCGCGGAGCACAATAACCGGGTTAAACGGGGAGCGGTCACCGCCATTCC
JMFF044L11+                   GCGCCGCGGAGCACAATAACCGGGTTAAACGGGGAGCGGTCACCGCCATTCC
                      ____________________________________________________________
consensus             CTTCGGCGGCGCCGCGGAGCACAATAACCGGGTTAAACGGGGAGCGGTCACCGCCATTCC
 
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JMFS143H11+           TCCGGCTCCTCCTCACGCCCGGACTAGAGCCGGAGCCCGGCGCCGCGTTCTGATCCGAGC
JMFF050A21+           TCCGGCTCCTCCTCACGCCCGGACTAGAGCCGGAGCCCGGCGCCGCGTTCTGATCCGAGC
JMFF044L11+           TCCGGCTCCTCCTCACGCCCGGACTAGAGCCGGAGCCCGGCGCCGCGTTCTGATCCGAGC
                      ____________________________________________________________
consensus             TCCGGCTCCTCCTCACGCCCGGACTAGAGCCGGAGCCCGGCGCCGCGTTCTGATCCGAGC
 
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JMFS143H11+           TCTGCATCACGAACGCAGCCGACGCCGCGAAACGGCTCCGGCGAGACTCCGAGAGCAAGG
JMFF050A21+           TCTGCATCACGAACGCAGCCGACGCCGCGAAACGGCTCCGGCGAGACTCCGAGAGCAAGG
JMFF044L11+           TCTGCATCACGAACGCAGCCGACGCCGCGAAACGGCTCCGGCGAGACTCCGAGAGCAAGG
                      ____________________________________________________________
consensus             TCTGCATCACGAACGCAGCCGACGCCGCGAAACGGCTCCGGCGAGACTCCGAGAGCAAGG
 
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JMFS143H11+           ATCGGGTCGGAGTATCGATTTCCTCGATAAACCCACTGTCACAATCCGGGCAAGCCACGG
JMFF050A21+           ATCGGGTCGGAGTATCGATTTCCTCGATAAACCCACTGTCACAATCCGGGCAAGCCACGG
JMFF044L11+           ATCGGGTCGGAGTATCGATTTCCTCGATAAACCCACTGTCACAATCCGGGCAAGCCACGG
JMFF049E12+                                              CTGTCACAATCCGGGCAAGCCACGG
                      ____________________________________________________________
consensus             ATCGGGTCGGAGTATCGATTTCCTCGATAAACCCACTGTCACAATCCGGGCAAGCCACGG
 
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JMFS143H11+           AATCCTGGTCCCACACTCGCACAAACCTATCGCATCTGTAACACCAATACGTAGAAGACA
JMFF050A21+           AATCCTGGTCCCACACTCGCACAAACCTATCGCATCTGTAACACCAATACGTAGAAGACA
JMFF044L11+           AATCCTGGTCCCACACTCGCACAAACCTATCGCATCTGTAACACCAATACGTAGAAGACA
JMFF049E12+           AATCCTGGTCCCACACTCGCACAAACCTATCGCATCTGTAACACCAATACGTAGAAGACA
                      ____________________________________________________________
consensus             AATCCTGGTCCCACACTCGCACAAACCTATCGCATCTGTAACACCAATACGTAGAAGACA
 
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JMFS143H11+           TCGACATCTCCGTTTATCACGTGAATTCCACAAACGAATTTCAGATTACAGAAATAATTC
JMFF050A21+           TCGACATCTCCGTTTATCACGTGAATTCCACAAACGAATTTCAGATTACAGAAATAATTC
JMFF044L11+           TCGACATCTCCGTTTATCACGTGAATTCCACAAACGAATTTCAGATTACAGAAATAATTC
JMFF049E12+           TCGACATCTCCGTTTATCACGTGAATTCCACAAACGAATTTCAGATTACAGAAATAATTC
                      ____________________________________________________________
consensus             TCGACATCTCCGTTTATCACGTGAATTCCACAAACGAATTTCAGATTACAGAAATAATTC
 
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JMFS143H11+           CTCAAATTCAGGCTTCAGATCTTCAAATCACAACAATTTTTTAGTAAATTCAAACAAAAA
JMFF050A21+           CTCAAATTCAGGCTTCAGATCTTCAAATCACAACAATTTTTTAGTAAATTCAAACAAAAA
JMFF044L11+           CTCAAATTCAGGCTTCAGATCTTCAAATCACAACAATTTTTTAGTAAATTCAAACAAAAA
JMFF049E12+           CTCAAATTCAGGCTTCAGATCTTCAAATCACAACAATTTTTTAGTAAATACAAACAAAAA
                      ____________________________________________________________
consensus             CTCAAATTCAGGCTTCAGATCTTCAAATCACAACAATTTTTTAGTAAATTCAAACAAAAA
 
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JMFS143H11+           CTACAGAGATCAGTGCAAAGATCGAAGCTTATTTATGGAAACGAACGTTAAGGAACCAAA
JMFF050A21+           CTACAGAGATCAGTGCAAAGATCGAAGCTTATTTATGGAAACGAACGTTAAGGAACCAAA
JMFF044L11+           CTACAGAGATCAGTGCAAAGATCGAAACTTATTTATGGAAACGAACGTTAAGGAACCAAA
JMFF049E12+           CTACAGAGATCAGTGCAAAGATCGAAGCTTATTTATGGAAACGAACGTTAAGGAACCAAA
                      ____________________________________________________________
consensus             CTACAGAGATCAGTGCAAAGATCGAAGCTTATTTATGGAAACGAACGTTAAGGAACCAAA
 
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JMFS143H11+           TTTTGAAATATGTATGCATAAAACTAAGGAGCGGAGCACGGA                  
JMFF050A21+           TTTTGAAATATGTATGCATAAAACTAAGGAGCGGAGCACGGAGGAAGAATATTCCGGCCA
JMFF044L11+           TTTTGAAATATGTATGCATAAAACTAAGGAGCGGAGCACGGAGGAAGAATATTCCGGCCA
JMFF049E12+           TTTTGAAATATGTATGCATAAAACTAAGGAGCGGAGCACGGAGGAAGAATATTCCGGCCA
                      ____________________________________________________________
consensus             TTTTGAAATATGTATGCATAAAACTAAGGAGCGGAGCACGGAGGAAGAATATTCCGGCCA
 
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JMFF050A21+           CAGCGGAGAGAGAGAGAGTCAGAGAGAGAGTCAGAGAGAGAGAGAGA             
JMFF044L11+           CAGCGGAGAGAGAGAGAGTCAGAGAGAGAGTCAGAGAGAGAGAGAGA             
JMFF049E12+           CAGCGGAGAGAGAGAGAGTCAGAGAGAGAGTCAGAGAGAGAGAGAGAACTGAATACTGAA
                      ____________________________________________________________
consensus             CAGCGGAGAGAGAGAGAGTCAGAGAGAGAGTCAGAGAGAGAGAGAGAACTGAATACTGAA