Contig 008890:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038H11Sequence566008890 (8)gb|EYU18040.1|7e-67hypothetical protein MIMGU_mgv11b012697mg [Erythranthe guttata]702008890 (8)gb|ABM55742.1|2e-78putative transcription factor Btf3 [Capsicum annuum]
JMFF048N06Sequence442008890 (8)gb|ABM55742.1|2e-57putative transcription factor Btf3 [Capsicum annuum]272008890 (8)ref|XP_010037015.1|2e-09PREDICTED: transcription factor BTF3 homolog 4 [Eucalyptus grandis]
JMFF048N14Sequence512008890 (8)ref|XP_009629608.1|9e-67PREDICTED: transcription factor BTF3 homolog 4-like [Nicotiana tomentosiformis]433008890 (8)gb|ABE01085.1|5e-39BTF3 [Nicotiana benthamiana]
JMFN029L02Sequence633008890 (8)gb|ABM55742.1|2e-76putative transcription factor Btf3 [Capsicum annuum]
JMFN033F22Sequence504008890 (8)ref|XP_009766702.1|6e-70PREDICTED: transcription factor BTF3 homolog 4-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF048N14- AGGGTAAAATTAATTGAT
                      ____________________________________________________________
consensus AGGGTAAAATTAATTGAT
 
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rJMFF048N14- AACAATAACATCCATGTAATAAAGCTTGGAATCTCATAATACACATCATATTCAGCACTC
                      ____________________________________________________________
consensus AACAATAACATCCATGTAATAAAGCTTGGAATCTCATAATACACATCATATTCAGCACTC
 
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rJMFF048N06- GAACAAAATTTAATTGAAATTTTA
rJMFF048N14- ACCCATAGATAGCAAAGATCACAAATCACATAAAAGGAACAAAATTTAATTGAAATTTTA
rJMFF038H11- GAACAAAATTTAATTAAAATTTTA
                      ____________________________________________________________
consensus ACCCATAGATAGCAAAGATCACAAATCACATAAAAGGAACAAAATTTAATTGAAATTTTA
 
. : . : . : . : . : . :
rJMFF048N06- TTTTTGTCCCTCATCGGCAGCAGCTTCAAAGGTTTCACCATCCACAAGTTGGGGCACCTC
rJMFF048N14- TTTTTGTCCCTCATCGGCAGCAGCTTCAAAGGTTTCACCATCCACAAGTTGGGGCACCTC
JMFN029L02+ CATCGGCAGCAGCTTCAAAGGTTTCACCATCCACAAGTTGGGGCACCTC
rJMFF038H11- TTTTTGTCCCTCATCGGCAGCAGCTTCAAAGGTTTCACCATCCACGAGTTGGGGCACC--
                      ____________________________________________________________
consensus TTTTTGTCCCTCATCGGCAGCAGCTTCAAAGGTTTCACCATCCACAAGTTGGGGCACCTC
 
. : . : . : . : . : . :
rJMFF048N06- ATCATCATCATCTTCTTGAAGGGCATTTGCACCAGTAAATGCATCTGCACTATCAGCAGA
rJMFF048N14- ATCATCATCATCTTCTTGAAGGGCATTTGCACCAGTAGATGCATCTGCACTATCAGCAGT
JMFN033F22+ ATCATCATCTTCTTGCGGGGCATTTGCACCAGCAATTAAATCTGCACTATCAGCTGT
JMFF038H11+ ATCTGCACTATCAGCTGT
JMFN029L02+ ATCATCATCATCTTCTTGAAGGGCATTGCACCCAGTAGATGCATCTGCACTATCAGCAGT
rJMFF038H11- -TCATCATCATCTTCTTGCGGGGCATTTGCACCAGCAATTAAATCTGCACTATCAGCTGT
JMFF048N14+ GCACCAGTAGATGCATCTGCACTATCAGCAGT
                      ____________________________________________________________
consensus ATCATCATCATCTTCTTGAAGGGCATTTGCACCAGTAGATGCATCTGCACTATCAGCAGT
 
. : . : . : . : . : . :
rJMFF048N06- ACCAGTTGTTTGCTTTTGGAACTGCTCTGCCA
rJMFF048N14- ACCAGTTGTTTGCTTTTGGAACTGCTCTGCCAACTTCTTCAAGTTCTCAAGATTGTCAGG
JMFN033F22+ ACCAGTCGTTTGCTTTTGGAACTGCTCTGCCAACTTCTTCAAGTTCTCGAGATTGTCAGG
JMFF038H11+ ACCAGTCGTTTGCTTTTGGAACTGCTCTGCCAACTTCTTCAAGTTCTCGAGATTGTCAGG
JMFF048N06+ CAAGATTGTCAGG
JMFN029L02+ ACCAGTTGTTTGCTTTTGGAACTGCTCTGCCAACTTCTTCAAGTTCTCAAGATTGTCAGG
rJMFF038H11- ACCAGTCGTTTGCTTTTGGAACTGCTCTGCCAACTTCTTCAAGTTCTCGAGATTGTCAGG
JMFF048N14+ ACCAGTTGTTTGCTTTTGGAACTGCTCTGCCAACTTCTTCAAGTTCTCAAGATTGTCAGG
                      ____________________________________________________________
consensus ACCAGTTGTTTGCTTTTGGAACTGCTCTGCCAACTTCTTCAAGTTCTCAAGATTGTCAGG
 
. : . : . : . : . : . :
rJMFF048N14- ACCCAATTGGTGAATAATTTGAGGAAGAATATCTTGCAATTTCTTAATCTGAGGAGAACC
JMFN033F22+ ACCCAATTGGTGAATAATTTGTGGAAGAATATCTTGCAATTTCTTAATGTGAGGAGCACC
JMFF038H11+ ACCCAATTGGTGAATAATTTGTGGAAGAATATCTTGCAATTTCTTAATCTGAGGAGCACC
JMFF048N06+ ACCCAATTGGTGAATAATTTGAGGAAGAATATCTTGCAATTTCTTAATCTGAGGAGAACC
JMFN029L02+ ACCCAATTGGTGAATAATTTGAGGAAGAATATCTTGCAATTTCTTAATCTGAGGAGAACC
rJMFF038H11- ACCCAATTGGTGAATAATTTGTGGAAGAATATCTTGCAATTTCTTAATCTGAGGAGCACC
JMFF048N14+ ACCCAATTGGTGAATAATTTGAGGAAGAATATCTTGCAATTTCTTAATCTGAGGAGAACC
                      ____________________________________________________________
consensus ACCCAATTGGTGAATAATTTGAGGAAGAATATCTTGCAATTTCTTAATCTGAGGAGAACC
 
. : . : . : . : . : . :
rJMFF048N14- ACTCACAACCCAAGTATTTGCAGCAATTGAAGCTTGAACTTTTGGATTAAGGAAC
JMFN033F22+ ACTCACAACCCAAGTATTTGCGGCAATTGAAGCTTGAACTTTTGGATTAAGGAACTGGAC
JMFF038H11+ ACTCACAACCCAAGTATTTGCGGCAATTGAAGCTTGAACTTTTGGATTAAGGAACTGGAC
JMFF048N06+ ACTCACAACCCAAGTATTTGCAGCAATTGAAGCTTGAACTTTTGGATTAAGGAACTGGAC
JMFN029L02+ ACTCACAACCCAAGTATTTGCAGCAATTGAAGCTTGAACTTTTGGATTAAGGAACTGGAC
rJMFF038H11- ACTCACAACCCAAGTATTTGCGGCAATTGAAGCTTGAACTTTTGGATTAAGGAACTGGAC
JMFF048N14+ ACTCACAACCCAAGTATTTGCAGCAATTGAAGCTTGAACTTTTGGATTAAGGAACTGGAC
                      ____________________________________________________________
consensus ACTCACAACCCAAGTATTTGCAGCAATTGAAGCTTGAACTTTTGGATTAAGGAACTGGAC
 
. : . : . : . : . : . :
JMFN033F22+ AACTACATCCTCCTTAAAAATGTTCACCTCTTCTATGGCAGGAATGGCATTCACCCCTAT
JMFF038H11+ AACTACATCCTCCTTAAAAATGTTCACCTCTTCTATGGCAGGAATGGCATTCACCCCTAT
JMFF048N06+ AACTACATCCTCCTTAAAAATGTTCACCTCTTCTATGGCAGGAATGGCATTCACCCCTAT
JMFN029L02+ AACTACATCCTCCTTAAAAATGTTCACCTCTTCTATGGCAGGAATGGCATTCACCCCTAT
rJMFF038H11- AACTACATCCTCCTTAAAAATGTTCACCTCTTCTATGGCAGGAATGGCATTCACCCCTAT
JMFF048N14+ AACTACATCCTCCTTAAAAATGTTCACCTCTTCTATGGCAGGAATGGCATTCACCCCTAT
                      ____________________________________________________________
consensus AACTACATCCTCCTTAAAAATGTTCACCTCTTCTATGGCAGGAATGGCATTCACCCCTAT
 
. : . : . : . : . : . :
JMFN033F22+ TCTCTTCAGAGTACTCTGAAGTCTTTTGTCATCTGTAGTAGTAGTTTTGTGAACCGCCTT
JMFF038H11+ TCTCTTCAGAGTACTCTGAAGTCTTTTGTCATCTGTAGTAGTAGTTTTGTGAACCGCCTT
JMFF048N06+ TCTCTTCAGAGTACTCTGAAGTCTTTTGTCATCCGTGGTAGTAGTTTTGTGAACCGCCTT
JMFN029L02+ TCTCTTCAGAGTACTCTGAAGTCTTTTGTCATCCGTGGTAGTAGTTTTGTGAACCGCCTT
rJMFF038H11- TCTCTTCAGAGTACTCTGAAGTCTTTTGTCATCTGTAGTAGTAGTTTTGTGAACCGCCTT
JMFF048N14+ TCTCTTCAGAGTACTCTGAAGTCTTTTGTCATCCGTGGTAGTAGTTTTGTGAACCGCCTT
                      ____________________________________________________________
consensus TCTCTTCAGAGTACTCTGAAGTCTTTTGTCATCTGTAGTAGTAGTTTTGTGAACCGCCTT
 
. : . : . : . : . : . :
JMFN033F22+ CTTCTTTCTCCTCATAGTTCCCTTGCCACCGGTCCGGACAGAACCAGCCATCTTTTGAAG
JMFF038H11+ CTTCTTTCTCCTCATAGTTCCCTTGCCACCGGTCCGGACAGAACCAGCCATCTTTTGAAG
JMFF048N06+ CTTCTTTCTCCTCATAGTTCCCTTGCCACCAGTCCGGACAGAACCGGCCATCTTTTGAAG
JMFN029L02+ CTTCTTTCTCCTCATAGTTCCCTTGCCACCAGTCCGGACAGAACCGGCCATCTTTTGAAG
rJMFF038H11- CTTCTTTCTCCTCATAGTTCCCTTGCCACCGGTCCGGACAGAACCAGCCATCTTTTGAAG
JMFF048N14+ CTTCTTTCTCCTCATAGTTCCCTTGCCACCAGTCCGGACAGAACCGGCCATCTTTTGAAG
                      ____________________________________________________________
consensus CTTCTTTCTCCTCATAGTTCCCTTGCCACCGGTCCGGACAGAACCAGCCATCTTTTGAAG
 
. : . : . : . : . : . :
JMFN033F22+ CTTTTCTACATTCATCTCTGACGATGCTT
JMFF038H11+ CTTTTCTACATTCATCTC
JMFF048N06+ CTTTTCTACATTCATCTCG
JMFN029L02+ CTTTTCTACATTCATCTCG
rJMFF038H11- CTTTTCTACATTCATCTCTGACGATGCTT
JMFF048N14+ CTTTTCTACATTCATCTCGCACGATGCTTTAGCGGCTGTTGACCGAGGGCGGGAAATAGT
                      ____________________________________________________________
consensus CTTTTCTACATTCATCTCTGACGATGCTTTAGCGGCTGTTGACCGAGGGCGGGAAATAGT
 
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JMFF048N14+ GGCGGACGGTGGCGAGGGAGAGAGAGCGAGAGCTAGAGCTGTGATAGTTGGGATAAAAGT
                      ____________________________________________________________
consensus GGCGGACGGTGGCGAGGGAGAGAGAGCGAGAGCTAGAGCTGTGATAGTTGGGATAAAAGT