Contig 008889:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048M18Sequence407008889 (2)ref|XP_006342667.1|1e-50PREDICTED: pollen-specific protein SF3-like [Solanum tuberosum]
JMFN016P11Sequence612008889 (2)ref|XP_009766668.1|3e-86PREDICTED: pollen-specific protein SF3-like [Nicotiana sylvestris] gb|AAD56950.1

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN016P11+ TGGTGATGCTGCAGTNAGAGCCTCCCC
                      ____________________________________________________________
consensus TGGTGATGCTGCAGTNAGAGCCTCCCC
 
. : . : . : . : . : . :
JMFN016P11+ TCGTAGGCAATATAGTTAGACGGGCTGATGGTGCACCCCGCGTGGCTGCACTTGAAGCAG
                      ____________________________________________________________
consensus TCGTAGGCAATATAGTTAGACGGGCTGATGGTGCACCCCGCGTGGCTGCACTTGAAGCAG
 
. : . : . : . : . : . :
JMFN016P11+ GCCTTATGGTACGCCGTGCCGTTCACGCTGATCTTCTCCGTCGGGTAAACCGTGAGGGTG
                      ____________________________________________________________
consensus GCCTTATGGTACGCCGTGCCGTTCACGCTGATCTTCTCCGTCGGGTAAACCGTGAGGGTG
 
. : . : . : . : . : . :
JMFN016P11+ CAGGTGACGCATTTATCCGTCGTCCCTACAAAGTGCCCCGACGGCACCCTCCCAAGCCTC
                      ____________________________________________________________
consensus CAGGTGACGCATTTATCCGTCGTCCCTACAAAGTGCCCCGACGGCACCCTCCCAAGCCTC
 
. : . : . : . : . : . :
JMFN016P11+ TCCCCCGCGTCCACGGGACCCGCACCCTTCTCCGGCCGCGCCACTTTGGGGATCCCTTCG
JMFF048M18+ CGGGACCCGCACCCTTCTCCGGCCGCGCCACTTTGGGGATCCCTTCG
                      ____________________________________________________________
consensus TCCCCCGCGTCCACGGGACCCGCACCCTTCTCCGGCCGCGCCACTTTGGGGATCCCTTCG
 
. : . : . : . : . : . :
JMFN016P11+ AAGCTCTTGTCCAGGCTGCCGGTTCGCTTGAACAGCTGATCAAAGTGCGGGCGGCAGTAG
JMFF048M18+ AAGCTCTTGTCCAGGCTGCCGGTTCGCTTGAACAGCTGATCAAAGTGCGGGCGGCAGTAG
                      ____________________________________________________________
consensus AAGCTCTTGTCCAGGCTGCCGGTTCGCTTGAACAGCTGATCAAAGTGCGGGCGGCAGTAG
 
. : . : . : . : . : . :
JMFN016P11+ AGAACCCCCTCGAAGGAGTTGAAGTTGCTGAGCTTGAGGGTGCCCTTGCAGTGGTAGCAT
JMFF048M18+ AGAACCCCCTCGAAGGAGTTGAAGTTGCTGAGCTTGAGGGTGCCCTTGCAGTGGTAGCAT
                      ____________________________________________________________
consensus AGAACCCCCTCGAAGGAGTTGAAGTTGCTGAGCTTGAGGGTGCCCTTGCAGTGGTAGCAT
 
. : . : . : . : . : . :
JMFN016P11+ CTGAAGCATGATTTGTGGTAGACTCTGTTGTCTGCGGCGAGGCGATCAACGAGATACACG
JMFF048M18+ CTGAAGCATGATTTGTGGTAGACTCTGTTGTCTGCGGCGAGGCGATCAACGAGATACACG
                      ____________________________________________________________
consensus CTGAAGCATGATTTGTGGTAGACTCTGTTGTCTGCGGCGAGGCGATCAACGAGATACACG
 
. : . : . : . : . : . :
JMFN016P11+ GTCTTCTCGCAGGCCATGCACTTCTGGTTTGTTCCCTGAAATGCCATTGTTTTTTTGAAT
JMFF048M18+ GTCTTCTCGCAGGCCATGCACTTCTGGTTTGTTCCCTGAAATGCCATTGTTTTTTTGAAT
                      ____________________________________________________________
consensus GTCTTCTCGCAGGCCATGCACTTCTGGTTTGTTCCCTGAAATGCCATTGTTTTTTTGAAT
 
. : . : . : . : . : . :
JMFN016P11+ TGGAATTGTTTTTATTTTGGAAGATGGATCGAGCAAGGCGGGTAGATGAGAGAGAGAACA
JMFF048M18+ TGGAATTGTTTTTATTTTGGAAGATGGATCGAGCAAGGCGGGTAGATGAGAGAGAGAACA
                      ____________________________________________________________
consensus TGGAATTGTTTTTATTTTGGAAGATGGATCGAGCAAGGCGGGTAGATGAGAGAGAGAACA
 
. : . : . : . : . : . :
JMFN016P11+ AGCTTGTTTTATTCCTTTTGTTCTCTCTTCCCCTCACTCTTTTTG
JMFF048M18+ AGCTTGTTTTATTCCTTTTGTTCTCTCTTCCCCTCACTCTTTTTGAGCTGAGCTGATGAT
                      ____________________________________________________________
consensus AGCTTGTTTTATTCCTTTTGTTCTCTCTTCCCCTCACTCTTTTTGAGCTGAGCTGATGAT