Contig 008875:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046C06Sequence603008875 (2)ref|XP_006352669.1|2e-57PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial530005529 (3)ref|XP_006343172.1|9e-05PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Solanum tuberosum]
JMSF013B14Sequence489008875 (2)emb|CDP03932.1|1e-35unnamed protein product [Coffea canephora]728005529 (3)ref|XP_010110885.1|3e-08Mitochondrial rRNA methyltransferase [Morus notabilis] gb|EXC28704.1| Mitochondr

Alignment

This contig is upended


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JMFF046C06+                                                                    ATC
                      ____________________________________________________________
consensus                                                                      ATC
 
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JMFF046C06+           AAATGCCGATTTAAACAACGATCTACGGCCGCAGCAGAATTAATCATGGGAGTGTACCAG
                      ____________________________________________________________
consensus             AAATGCCGATTTAAACAACGATCTACGGCCGCAGCAGAATTAATCATGGGAGTGTACCAG
 
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JMSF013B14+                                                           TTCTGCAACGCG
JMFF046C06+           GGGGAGGCTCGGAGGGCAAGCGCCTGCGAGGACCTCCTCCACCAGGGTTTCTGCAACGCG
                      ____________________________________________________________
consensus             GGGGAGGCTCGGAGGGCAAGCGCCTGCGAGGACCTCCTCCACCAGGGTTTCTGCAACGCG
 
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JMSF013B14+           GTATCGCTTACCGGAGATGNCAATTCGGATAATGCGGAGGTAAGTGACATGGTTGTGCTT
JMFF046C06+           GTATCGCTTACCGGAGATGGCAATTCGGATAATGCGGAGGTAAGTGACATGGTTGTGCTT
                      ____________________________________________________________
consensus             GTATCGCTTACCGGAGATGGCAATTCGGATAATGCGGAGGTAAGTGACATGGTTGTGCTT
 
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JMSF013B14+           GTAGCCTCGCTGCTGGCCTGTCCAACGGAAAATGTCCAGTGCCAGGTCCGGGTCGCATTG
JMFF046C06+           GTAGCCTCGCTGCTGGCCTGTCCAACGGAAAATGTCCAGTGCCAGGTCCGGGTCGCATTG
                      ____________________________________________________________
consensus             GTAGCCTCGCTGCTGGCCTGTCCAACGGAAAATGTCCAGTGCCAGGTCCGGGTCGCATTG
 
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JMSF013B14+           GGACTGCAAGGCTTCGTCGACGTCTGACGGCGTGAACCCCGGACGGAGTTTGCTTATCCA
JMFF046C06+           GGACTGCAAGGCTTCGTCGACGTCTGACGGCGTGAACCCCGGACGGAGTTTGCTTATCCA
                      ____________________________________________________________
consensus             GGACTGCAAGGCTTCGTCGACGTCTGACGGCGTGAACCCCGGACGGAGTTTGCTTATCCA
 
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JMSF013B14+           TGAATCGAAATGCTTTTCCGATGGGGTTAGAGTCCGGGGATTAGGGTTTGGGAGGTCTTT
JMFF046C06+           TGAATCGAAATGCTTTTCCGATGGGGTTAGAGTCCGGGGATTAGGGTTTGGGAGGTCTTT
                      ____________________________________________________________
consensus             TGAATCGAAATGCTTTTCCGATGGGGTTAGAGTCCGGGGATTAGGGTTTGGGAGGTCTTT
 
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JMSF013B14+           AGATGGGTGCGAGAGGGTTGGTGCAGTAGGGTGGAGGTGAGAAGATGAAGCTGCGGAAAG
JMFF046C06+           AGATGGGTGCGAGAGGGTTGGTGCAGTAGGGTGGAGGTGAGAAGATGAAGCTGCGGAAAG
                      ____________________________________________________________
consensus             AGATGGGTGCGAGAGGGTTGGTGCAGTAGGGTGGAGGTGAGAAGATGAAGCTGCGGAAAG
 
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JMSF013B14+           GGGCCGGAGAGAAAGAGAAGAGAGGATAGATGATCGGAATCTGGAGATAAAGGGATGTGG
JMFF046C06+           GGGCCGGAGAGAAAGAGAAGAGAGGATAGATGATCGGAATCTGGAGATAAAGGGATGTGG
                      ____________________________________________________________
consensus             GGGCCGGAGAGAAAGAGAAGAGAGGATAGATGATCGGAATCTGGAGATAAAGGGATGTGG
 
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JMSF013B14+           TAACACTGCTCGCATTGCTCCTGGAACGCAGGCCAAGAATTCGCCGGAATTGGGTTTCGG
JMFF046C06+           TAACACTGCTCGCATTGCTCCTGGAACGCAGGCCAAGAATTCGCCGGAATTGGGTTTCGG
                      ____________________________________________________________
consensus             TAACACTGCTCGCATTGCTCCTGGAACGCAGGCCAAGAATTCGCCGGAATTGGGTTTCGG
 
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JMSF013B14+           GATTTTCAGGGTAGAAATGGAGCGCGTAGTTAGGTCACCGCTTTGAACTTCTACT     
JMFF046C06+           GATTTTCAGGGTAGAAATGGAGCGCGTAGTTAGGTCACCGCTTTGAACTTCTACTAAAAC
                      ____________________________________________________________
consensus             GATTTTCAGGGTAGAAATGGAGCGCGTAGTTAGGTCACCGCTTTGAACTTCTACTAAAAC