Contig 008860:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043N22Sequence642008860 (3)ref|XP_009767944.1|5e-50PREDICTED: palmitoyl-protein thioesterase 1-like [Nicotiana sylvestris]623008860 (3)ref|XP_002274560.1|2e-43PREDICTED: palmitoyl-protein thioesterase 1 [Vitis vinifera] emb|CBI16648.3| unn
JMFN036K07Sequence607008860 (3)ref|XP_008658171.1|1e-66PREDICTED: palmitoyl-protein thioesterase 1 isoform X3 [Zea mays]

Alignment

This contig is upended


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rJMFF043N22-          ACACGTACGTACGTACGTAATGATATATAGTTTTAATTTGATAGATAGATATAACATACA
                      ____________________________________________________________
consensus             ACACGTACGTACGTACGTAATGATATATAGTTTTAATTTGATAGATAGATATAACATACA
 
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rJMFF043N22-          GCAGAATATGATGATGTCCCTTTATTTATTGTATATATATAGTAGGGGGTGGATAACAAT
                      ____________________________________________________________
consensus             GCAGAATATGATGATGTCCCTTTATTTATTGTATATATATAGTAGGGGGTGGATAACAAT
 
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rJMFF043N22-          TATTTATGAGATAGATCCTCAAGTCCATCCTTGTCCCGCGGGCCTAGCTAGCTGGATGGT
                      ____________________________________________________________
consensus             TATTTATGAGATAGATCCTCAAGTCCATCCTTGTCCCGCGGGCCTAGCTAGCTGGATGGT
 
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rJMFF043N22-          ATGTCTCATTTCATGTAGGGAATAATATACATCCTAATTTCAGGAGGTGTTATTACAAGG
                      ____________________________________________________________
consensus             ATGTCTCATTTCATGTAGGGAATAATATACATCCTAATTTCAGGAGGTGTTATTACAAGG
 
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rJMFF043N22-          TGCTGTCCAGGACACGAGAAGAACTTAACTTTTCCGGCTTTATCCAATGTTTTAAACCCG
JMFN036K07+                         CGAGAAGAACTTAACTTTTCCGGCTTTATCCAATGTTTTAAACCCG
                      ____________________________________________________________
consensus             TGCTGTCCAGGACACGAGAAGAACTTAACTTTTCCGGCTTTATCCAATGTTTTAAACCCG
 
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rJMFF043N22-          AAGGTGTCCTTTTGGTAAAGATCAGTCTGCTGTACAGGCACGGCTCTAGAGAAATCTCCG
JMFN036K07+           AAGGTGTCCTTTTGGTAAAGATCAGTCTGCTGTACAGGCACGGCTCTAGAGAAATCTCCG
                      ____________________________________________________________
consensus             AAGGTGTCCTTTTGGTAAAGATCAGTCTGCTGTACAGGCACGGCTCTAGAGAAATCTCCG
 
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rJMFF043N22-          TTTGGATAATAGCCGAAGTGGGAACTTATTTGTGGCAAGATAATTGTGTCGGCTCTAAAC
JMFN036K07+           TTTGGATAATAGCCGAAGTGGGAACTTATTTGTGGCAAGATAATTGTGTCGGCTCTAAAC
                      ____________________________________________________________
consensus             TTTGGATAATAGCCGAAGTGGGAACTTATTTGTGGCAAGATAATTGTGTCGGCTCTAAAC
 
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rJMFF043N22-          AAGATAAGAACAAGCATTGTGAGGCTGGAGAATCTTCTCTTGCGTTCTGCACTTTGGGCA
JMFN036K07+           AAGATAAGAACAAGCATTGTGAGGCTGGAGAATCTTCTCTTGCGTTCTGCACTTTGGGCA
                      ____________________________________________________________
consensus             AAGATAAGAACAAGCATTGTGAGGCTGGAGAATCTTCTCTTGCGTTCTGCACTTTGGGCA
 
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rJMFF043N22-          TCTTGGATTTCGTTGTTTATATATGGCAGAAATTTGGATTGTGCCAAGTAACCCTTCATA
JMFN036K07+           TCTTGGATTTCGTTGTTTATATATGGCAGAAATTTGGATTGTGCCAAGTAACCCTTCATA
JMFF043N22+                             ATATATGGCAGAAATTTGGATTGTGCCAAGTAACCCTTCATA
                      ____________________________________________________________
consensus             TCTTGGATTTCGTTGTTTATATATGGCAGAAATTTGGATTGTGCCAAGTAACCCTTCATA
 
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rJMFF043N22-          TCAGTGGGAATCTTGATATAGCCAGCAGGACCAAAATGTTTTTGAGCCATGGGGTTGTAT
JMFN036K07+           TCAGTGGGAATCTTGATATAGCCAGCAGGACCAAAATGTTTTTGAGCCATGGGGTTGTAT
JMFF043N22+           TCAGTGGGAATCTTGATATAGCCAGCAGGACCAAAATGTTTNTGAGCCATGGGGTTGTAT
                      ____________________________________________________________
consensus             TCAGTGGGAATCTTGATATAGCCAGCAGGACCAAAATGTTTTTGAGCCATGGGGTTGTAT
 
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rJMFF043N22-          ACTCCCATTCCATAATAATGACC                                     
JMFN036K07+           ACTCCCATTCCATAATAATGACCCATTAAACCACACCAGGGAAATTTTCCGCAAGGAATA
JMFF043N22+           ACTCCCATTCCATAATAATGACCCATTAAACCACACCAGGGAAATTTTCCGCAAGGAATA
                      ____________________________________________________________
consensus             ACTCCCATTCCATAATAATGACCCATTAAACCACACCAGGGAAATTTTCCGCAAGGAATA
 
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JMFN036K07+           GTTGAAGAATGACCTGCATTTGGGCCTCCCACCGAGATGAAACTCTTCACAGGCGGACCG
JMFF043N22+           GTTGAAGAATGACCTGCATTTGGGCCTCCCACCGAGACGAAACTCTTCACAGGCGGACCG
                      ____________________________________________________________
consensus             GTTGAAGAATGACCTGCATTTGGGCCTCCCACCGAGATGAAACTCTTCACAGGCGGACCG
 
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JMFN036K07+           TCACAGTTCTCAATCACTCCTCTCCCAACCATGTTGCCCTGGGAGAGAGAAACCATGTGG
JMFF043N22+           TCACAGTTCTCAATCACTCCTCTCCCAACCATGTTGCCCTGGGAGAGAGAAACCATGTGG
                      ____________________________________________________________
consensus             TCACAGTTCTCAATCACTCCTCTCCCAACCATGTTGCCCTGGGAGAGAGAAACCATGTGG
 
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JMFN036K07+           TAACCACCCTTTAGTTCTCCCATCCTGGTGATCTTCCGACAAGCATCTGCAACTTGGTCA
JMFF043N22+           TAACCACCCTTTAGTTCTCCCATCCTGGTGATCTTCCGACAAGCATCTGCAACTTGGTCA
                      ____________________________________________________________
consensus             TAACCACCCTTTAGTTCTCCCATCCTGGTGATCTTCCGACAAGCATCTGCAACTTGGTCA
 
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JMFN036K07+           TTCATTCCCATCATCCATGAA                                       
JMFF043N22+           TTCATTCCCATCATCCATGAACTTATTAGTCCATTTCCAACTTCCACGCATGATCCTTTA
                      ____________________________________________________________
consensus             TTCATTCCCATCATCCATGAACTTATTAGTCCATTTCCAACTTCCACGCATGATCCTTTA
 
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JMFF043N22+           ACTCTTAGCATGCCGCTAATTGTCAAAGTGTAATAAATACTTCCAACATCTTGACAAAAC
                      ____________________________________________________________
consensus             ACTCTTAGCATGCCGCTAATTGTCAAAGTGTAATAAATACTTCCAACATCTTGACAAAAC
 
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JMFF043N22+           ATTGGAACCCCATGGAGAACGATAAAAGCTGTAGAAGATGAGAGTGGAATGGAAGAGAAG
                      ____________________________________________________________
consensus             ATTGGAACCCCATGGAGAACGATAAAAGCTGTAGAAGATGAGAGTGGAATGGAAGAGAAG
 
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JMFF043N22+           ATGGCAAGAAAAACAATAAAAGTAGTTGAGAATGAGAAACACGAAGCCATGATTTTCATG
                      ____________________________________________________________
consensus             ATGGCAAGAAAAACAATAAAAGTAGTTGAGAATGAGAAACACGAAGCCATGATTTTCATG
 
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JMFF043N22+           AAGAAGCTAATTAAGATAGATTAAACAAGCTAGCTATACTAGCTTCTCTCTGTGAATTCC
                      ____________________________________________________________
consensus             AAGAAGCTAATTAAGATAGATTAAACAAGCTAGCTATACTAGCTTCTCTCTGTGAATTCC