Contig 008848:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025K02Sequence517008848 (4)ref|XP_004232295.1|5e-54PREDICTED: protease Do-like 1, chloroplastic [Solanum lycopersicum]696012396 (4)ref|XP_010243027.1|1e-68PREDICTED: protease Do-like 1, chloroplastic isoform X1 [Nelumbo nucifera]
JMFF040K10Sequence556008848 (4)ref|XP_004232295.1|8e-51PREDICTED: protease Do-like 1, chloroplastic [Solanum lycopersicum]779012396 (4)gb|ACZ74706.1|4e-98serine-type peptidase [Phaseolus vulgaris]
JMSF044O22Sequence773008848 (4)ref|XP_004232295.1|2e-108PREDICTED: protease Do-like 1, chloroplastic [Solanum lycopersicum]666012396 (4)ref|XP_009614636.1|3e-115PREDICTED: protease Do-like 1, chloroplastic [Nicotiana tomentosiformis]
JMSF050D23Sequence654008848 (4)ref|XP_004232295.1|6e-79PREDICTED: protease Do-like 1, chloroplastic [Solanum lycopersicum]683012396 (4)ref|XP_010243027.1|1e-68PREDICTED: protease Do-like 1, chloroplastic isoform X1 [Nelumbo nucifera]

Alignment

This contig is upended


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JMSF044O22+            CTGATGACACCAGTGGTGAGTGTATGATCAAGCCCAAAAGGATTCCCAATAGCGAATAC
                      ____________________________________________________________
consensus              CTGATGACACCAGTGGTGAGTGTATGATCAAGCCCAAAAGGATTCCCAATAGCGAATAC
 
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JMSF044O22+           TTTCTGACCAACAAGCAAGTCTGCAGATACACCAATTGGTATAGGTCTCAACTTGTCTTT
                      ____________________________________________________________
consensus             TTTCTGACCAACAAGCAAGTCTGCAGATACACCAATTGGTATAGGTCTCAACTTGTCTTT
 
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JMSF050D23+           GGGTGCATCAATGTGTAGTACAGCAACGTCTTTATCTTGGTCAAATCCAACAACTTTTGC
JMSF044O22+           GGGTGCATCAATGTGTAGTACAGCAACGTCTTTATCTTGGTCAAATCCAACAACTTTTGC
                      ____________________________________________________________
consensus             GGGTGCATCAATGTGTAGTACAGCAACGTCTTTATCTTGGTCAAATCCAACAACTTTTGC
 
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JMSF050D23+           ATCATAAGTACTCTGATCAGATAGAGTGACCCTGAGATCTGATGCACCGCGAATAACATG
JMFF025K02+                                                                   CATG
JMSF044O22+           ATCATAAGTACTCTGATCAGATAGAGTGACCCTGAGATCTGATGCACCGCGAATAACATG
JMFF040K10+                                                                   CATG
                      ____________________________________________________________
consensus             ATCATAAGTACTCTGATCAGATAGAGTGACCCTGAGATCTGATGCACCGCGAATAACATG
 
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JMSF050D23+           ATAATTCGTGACAATGTTACCATCTCTATCCCACACAAAACCTGAACCAGAACCTTGAGG
JMFF025K02+           ATAATTCGTGACAATGTTACCATCTCTATCCCACACAAAACCTGAACCAGAACCTTGAGG
JMSF044O22+           ATAATTCGTGACAATGTTACCATCTCTATCCCACACAAAACCTGAACCAGAACCTTGAGG
JMFF040K10+           ATAATTCGTGACAATGTTACCATCTCTATCCCACACAAAACCTGAACCAGAACCTTGAGG
                      ____________________________________________________________
consensus             ATAATTCGTGACAATGTTACCATCTCTATCCCACACAAAACCTGAACCAGAACCTTGAGG
 
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JMSF050D23+           CACCTCAAACACATCCAATGTGAACACATCTTGCCTGGCAGCGAGATTAGTTATATAGAC
JMFF025K02+           CACCTCAAACACATCCAATGTGAACACATCTTGCCTGGCAGCGAGATTAGTTATATAGAC
JMSF044O22+           CACCTCAAACACATCCAATGTGAACACATCTTGCCTGGCAGCGAGATTAGTTATATAGAC
JMFF040K10+           CACCTCAAACACATCCAATGTGAACACATCTTGCCTGGCAGCGAGATTAGTTATATAGAC
                      ____________________________________________________________
consensus             CACCTCAAACACATCCAATGTGAACACATCTTGCCTGGCAGCGAGATTAGTTATATAGAC
 
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JMSF050D23+           AACGGAAGGCGTATTCTCCTGAAAAAGCCGGACGGTAGCCAGCTCATCTGTCTGCAGCTT
JMFF025K02+           AACGGAAGGCGTATTCTCCTGAAAAAGCCGGACGGTAGCCAGCTCATCTGTCTGCAGCTT
JMSF044O22+           AACGGAAGGCGTATTCTCCTGAAAAAGCCGGACGGTAGCCAGCTCATCTGTCTGCAGCTT
JMFF040K10+           AACGGAAGGCGTATTCTCCTGAAAAAGCCGGACGGTAGCCAGCTCATCTGTCTGCAGCTT
                      ____________________________________________________________
consensus             AACGGAAGGCGTATTCTCCTGAAAAAGCCGGACGGTAGCCAGCTCATCTGTCTGCAGCTT
 
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JMSF050D23+           CCTCGGCGGAGTGACTACGAAGGCGGATGCAGCATCGACATCGGCAAGGAACAACGATAG
JMFF025K02+           CCTCGGCGGAGTGACTACGAAGGCGGATGCAGCATCGACATCGGCAAGGAACAACGATAG
JMSF044O22+           CCTCGGCGGAGTGACTACGAAGGCGGATGCAGCATCGACATCGGCAAGGAACAACGATAG
JMFF040K10+           CCTCGGCGGAGTGACTACGAAGGCGGATGCAGCATCGACATCGGCAAGGAACAACGATAG
                      ____________________________________________________________
consensus             CCTCGGCGGAGTGACTACGAAGGCGGATGCAGCATCGACATCGGCAAGGAACAACGATAG
 
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JMSF050D23+           AGACAAGACGGCGGAAGTGCAGGCCACGAAGATAGTATCCAAAAGCTTACTGGACGGCGA
JMFF025K02+           AGACAAGACGGCGGAAGTGCAGGCCACGAAGATAGTATCCAAAAGCTTACTGGACGGCGA
JMSF044O22+           AGACAAGACGGCGGAAGTGCAGGCCACGAAGATAGTATCCAAAAGCTTACTGGACGGCGA
JMFF040K10+           AGACAAGACGGCGGAAGTGCAGGCCACGAAGATAGTATCCAAAAGCTTACTGGACGGCGA
                      ____________________________________________________________
consensus             AGACAAGACGGCGGAAGTGCAGGCCACGAAGATAGTATCCAAAAGCTTACTGGACGGCGA
 
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JMSF050D23+           GTCCTCATCGGAGGAGCTACTTCGACATACAAAAACTGTAATGCTAGGGTTCCGGCGGGT
JMFF025K02+           GTCCTCATCGGAGGAGCTACTTCGACATACAAAAACTGTAATGCTAGGGTTCCGGCGGGT
JMSF044O22+           GTCCTCATCGGAGGAGCTACTTCGACATACAAAAACTGTAATGCTAGGGTTCCGGCGGGT
JMFF040K10+           GTCCTCATCGGAGGAGCTACTTCGACATACAAAAACTGTAATGCTAGGGTTCCGGCGGGT
                      ____________________________________________________________
consensus             GTCCTCATCGGAGGAGCTACTTCGACATACAAAAACTGTAATGCTAGGGTTCCGGCGGGT
 
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JMSF050D23+           AACTAGAGGCTTACTGAGCGAAAATCTGGAGCTGATCGAAGGCGAGGAGCGGGAAAAAGC
JMFF025K02+           AACTAGAGGCTTACTGAGCGAAAATCTGGAGCTGATCGAAGGCGAGGAGCGGGAAAAAGC
JMSF044O22+           AACTAGAGGCTTACTGAGCGAAAATCTGGAGCTGATCGAAGGCGAGGAGCGGGAAAAAGC
JMFF040K10+           AACTAGAGGCTTACTGAGCGAAAATCTGGAGCTGATCGAAGGCGAGGAGCGGGAAAAAGC
                      ____________________________________________________________
consensus             AACTAGAGGCTTACTGAGCGAAAATCTGGAGCTGATCGAAGGCGAGGAGCGGGAAAAAGC
 
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JMSF050D23+           TCGAGCTCGATTCACGGAGAAGAAAGAGGAAGACGAAATCAGCGAGTGCGAGCACGAAGC
JMFF025K02+           TCGAGCTCGATTCACGGAGAAGAAAGAGGAAGACGAAATCAGCGAGTGCGAGCACGAAGC
JMSF044O22+           TCGAGCTCGATTCACGGAGAAGAAAGAGGAAGACGAAATCAGCGAGTGCGAGCACGAAGC
JMFF040K10+           TCGAGCTCGATTCACGGAGAAGAAAGAGGAAGACGAAATCAGCGAGTGCGAGCACGAAGC
                      ____________________________________________________________
consensus             TCGAGCTCGATTCACGGAGAAGAAAGAGGAAGACGAAATCAGCGAGTGCGAGCACGAAGC
 
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JMSF050D23+           CATTTCCGAGGAAGCAACAGTTGACTGAGAGAGAGAAAATCGGAGGAACGAAT       
JMFF025K02+           CATTTCCGAGGAAGCAACAGTT                                      
JMSF044O22+           CATTTCCGAGGAAGCAACAGTTGACTGAGAGAGAGAAAATCGGAGGAACGAAT       
JMFF040K10+           CATTTCCGAGGAAGCAACAGTTGACTGAGAGAGAGAAAATCGGAGGAACGAATAGAAAAT
                      ____________________________________________________________
consensus             CATTTCCGAGGAAGCAACAGTTGACTGAGAGAGAGAAAATCGGAGGAACGAATAGAAAAT