Contig 008841:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038D23Sequence565008841 (4)emb|CDP13742.1|9e-60unnamed protein product [Coffea canephora]546008841 (4)emb|CDP13742.1|7e-60unnamed protein product [Coffea canephora]
JMFN029N21Sequence513008841 (4)emb|CDP13742.1|6e-60unnamed protein product [Coffea canephora]
JMFN036F07Sequence549008841 (4)emb|CDP13742.1|2e-59unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFN029N21+                                                         CAAGACAAACAATG
JMFN036F07+                              GGCAAAAACCAAAACATTATGATATTTCAAGACAAACAATG
rJMFF038D23-                                                                ACAATG
JMFF038D23+                                              TTATGATATTTCAAGACAAACAATG
                      ____________________________________________________________
consensus                                GGCAAAAACCAAAACATTATGATATTTCAAGACAAACAATG
 
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JMFN029N21+           AAGGTCAAGCAGCTTGCAAGACCGAATTCAGAGAATGTTTCATTGAATTCATCATCAAAC
JMFN036F07+           AAGGTCAAGCAGCTTGCAAGACCGAATTCAGAGAATGTTTCATTGAATTCATCATCAAAC
rJMFF038D23-          AAGGTCAAGCAGCTTGCAAGACCGAATTCAGAGAATGTTTCATTGAATTCATCATCAAAC
JMFF038D23+           AAGGTCAAGCAGCTTGCAAGACCGAATTCAGAGAATGTTTCATTGAATTCATCATCAAAC
                      ____________________________________________________________
consensus             AAGGTCAAGCAGCTTGCAAGACCGAATTCAGAGAATGTTTCATTGAATTCATCATCAAAC
 
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JMFN029N21+           ATTAATATCGATATGATTATTCGCAATTATCAGATTGGTCCACAAAACTCATATTGAAAC
JMFN036F07+           ATTAATATCGATATGATTATTCGCAATTATCAGATTGGTCCACAAAACTCATATTGAAAC
rJMFF038D23-          ATTAATATCGATATGATTATTCGCAATTATCAGATTGGTCCACAAAACTCATATTGAAAC
JMFF038D23+           ATTAATATCGATATGATTATTCGCAATTATCAGATTGGTCCACAAAACTCATATTGAAAC
                      ____________________________________________________________
consensus             ATTAATATCGATATGATTATTCGCAATTATCAGATTGGTCCACAAAACTCATATTGAAAC
 
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JMFN029N21+           AGACGCCCAAGTTCCTGGATTGGAATACTAAAAATCGAAAATAGCTCAGATAGATAGCGA
JMFN036F07+           AGACGCCCAAGTTCCTGGATTGGAATACTAAAAATCGAAAATAGCTCAGATAGATAGCGA
rJMFF038D23-          AGACGCCCAAGTTCCTGGATTGGAATACTAAAAATCGAAAATAGCTCAGATAGATAGCGA
JMFF038D23+           AGACGCCCAAGTTCCTGGATTGGAATACTAAAAATCGAAAATAGCTCAGATAGATAGCGA
                      ____________________________________________________________
consensus             AGACGCCCAAGTTCCTGGATTGGAATACTAAAAATCGAAAATAGCTCAGATAGATAGCGA
 
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JMFN029N21+           TTTCTTGTACTTAGCTACCTCTCCTTCGTTGGGGAAAAATCCCATGAGCCTTCCGGCAGA
JMFN036F07+           TTTCTTGTACTTAGCTACCTCTCCTTCGTTGGGGAAAAATCCCATGAGCCTTCCGGCAGA
rJMFF038D23-          TTTCTTGTACTTAGCTACCTCTCCTTCGTTGGGGAAAAATCCCATGAGCCTTCCGGCAGA
JMFF038D23+           TTTCTTGTACTTAGCTACCTCTCCTTCGTTGGGGAAAAATCCCATGAGCCTTCCGGCAGA
                      ____________________________________________________________
consensus             TTTCTTGTACTTAGCTACCTCTCCTTCGTTGGGGAAAAATCCCATGAGCCTTCCGGCAGA
 
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JMFN029N21+           GTTCTGGTAAGCGTACATGAAGCCTCCCATTAACCCAATCAATCCTCCTGTCACCATTGA
JMFN036F07+           GTTCTGGTAAGCGTACATGAAGCCTCCCATTAACCCAATCAATCCTCCTGTCACCATTGA
rJMFF038D23-          GTTCTGGTAAGCGTACATGAAGCCTCCCATTAACCCAATCAATCCTCCTGTCACCATTGA
JMFF038D23+           GTTCTGGTAAGCGTACATGAAGCCTCCCATTAACCCAATCAATCCTCCTGTCACCATTGA
                      ____________________________________________________________
consensus             GTTCTGGTAAGCGTACATGAAGCCTCCCATTAACCCAATCAATCCTCCTGTCACCATTGA
 
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JMFN029N21+           CGGGCCCCTTATACCCGGCTTTATACCGGAGAGATAGCCGACGGTGACGGAGACGCCGGT
JMFN036F07+           CGGGCCCCTTATACCCGGCTTTATACCGGAGAGATAGCCGACGGTGACGGAGACGCCGGT
rJMFF038D23-          CGGGCCCCTTATACCCGGCTTTATACCGGAGAGATAGCCGACGGTGACGGAGACGCCGGT
JMFF038D23+           CGGGCCCCTTATACCCGGCTTTATACCGGAGAGATAGCCGACGGTGACGGAGACGCCGGT
                      ____________________________________________________________
consensus             CGGGCCCCTTATACCCGGCTTTATACCGGAGAGATAGCCGACGGTGACGGAGACGCCGGT
 
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JMFN029N21+           GATGGTGGTGAATCGGAAGTAATCGAGGGCGCTGAAATTGGAAACCACCGTTGTGAAGGG
JMFN036F07+           GATGGTGGTGAATCGGAAGTAATCGAGGGCGCTGAAATTGGAAACCACCGTTGTGAAGGG
rJMFF038D23-          GATGGTGGTGAATCGGAAGTAATCGAGGGCGCTGAAATTGGAAACCACCGTTGTGAAGGG
JMFF038D23+           GATGGTGGTGAATCGGAAGTAATCGAGGGCGCTGAAATTGGAAACCACCGTTGTGAAGGG
                      ____________________________________________________________
consensus             GATGGTGGTGAATCGGAAGTAATCGAGGGCGCTGAAATTGGAAACCACCGTTGTGAAGGG
 
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JMFN029N21+           TGGATTCCGATCTATCACTGGATATTCCGGCTTCGCAGAAGCTGTAATGTCGGTATTCAT
JMFN036F07+           TGGATTCCGATCTATCACTGGATATTCCGGCTTCGCAGAAGCTGTAATGTCGGTATTCAT
rJMFF038D23-          TGGATTCCGATCTATCACTGGATATTCCGGCTTCGCAGAAGCTGTAATGTCGGTATTCAT
JMFF038D23+           TGGATTCCGATCTATCACTGGATATTCCGGCTTCGCAGAAGCTGTAATGTCGGTATTCAT
                      ____________________________________________________________
consensus             TGGATTCCGATCTATCACTGGATATTCCGGCTTCGCAGAAGCTGTAATGTCGGTATTCAT
 
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JMFN029N21+           CCTTGTTTTCTTCTTCTTC                                         
JMFN036F07+           CCTTGTTTTCTTCTTCTTCTTCTTCTTC                                
rJMFF038D23-          CCTTGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTTTGCTCTTTTAACAGTGACAC
JMFF038D23+           CCTTGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTTTGCTCTTTTAACAGTGACAC
                      ____________________________________________________________
consensus             CCTTGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTTTGCTCTTTTAACAGTGACAC