Contig 008838:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037G05Sequence573008838 (3)ref|XP_009589874.1|2e-93PREDICTED: hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [Nicotiana tomen734008838 (3)ref|XP_008226480.1|8e-86PREDICTED: probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 [Prunus mume]
JMFN030P11Sequence579008838 (3)ref|XP_008226480.1|4e-68PREDICTED: probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 [Prunus mume]

Alignment

This contig is upended


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rJMFF037G05-                                                            ATACAGAGTA
                      ____________________________________________________________
consensus                                                               ATACAGAGTA
 
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rJMFF037G05-          ACTATTTACAGAAGTCTTATAAAAAGTCTCTAAAAATCCATAAACACCAATAAATTTTTT
                      ____________________________________________________________
consensus             ACTATTTACAGAAGTCTTATAAAAAGTCTCTAAAAATCCATAAACACCAATAAATTTTTT
 
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JMFN030P11+           AAAATTCTTAAAAGTCTAAATTGATTTTAAAGACTTTCTAAAAATTTGAATCAAATACCC
rJMFF037G05-          AAAATTCTTAAAAGTCTAAATTGATTTTAAAGACTTTCTAAAAATTTGAATCAAATACCC
                      ____________________________________________________________
consensus             AAAATTCTTAAAAGTCTAAATTGATTTTAAAGACTTTCTAAAAATTTGAATCAAATACCC
 
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JMFN030P11+           CTTGTAGAGTTTATAAAAGTATTTACAAGTCTACATCAAATTCCAAGGGCATGAATGATT
rJMFF037G05-          CTTGTAGAGTTTATAAAAGTATTTACAAGTCTACATCAAATTCCAAGGGCATGAATGATT
                      ____________________________________________________________
consensus             CTTGTAGAGTTTATAAAAGTATTTACAAGTCTACATCAAATTCCAAGGGCATGAATGATT
 
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JMFN030P11+           TATTTTTTGCCACACTTTCTGCAAATTTCATTCTAGCTCCACAAATTCTTTATTTCTAAG
rJMFF037G05-          TATTTTTTGCCACACTTTCTGCAAATTTCATTCTAGCTCCACAAATTCTTTATTTCTAAG
                      ____________________________________________________________
consensus             TATTTTTTGCCACACTTTCTGCAAATTTCATTCTAGCTCCACAAATTCTTTATTTCTAAG
 
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JMFN030P11+           CCAGGATGCGAAATTGAACATTTGAAGCAAATGCACCCCAAGAGTTCAAAGTCGTGATGA
rJMFF037G05-          CCAGGATGCGAAATTGAACATTTGAAGCAAATGCACCCCAAGAGTTCAAAGTCGTGATGA
                      ____________________________________________________________
consensus             CCAGGATGCGAAATTGAACATTTGAAGCAAATGCACCCCAAGAGTTCAAAGTCGTGATGA
 
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JMFN030P11+           AGGGTTTGTGCTACCGGTTGCATTCCGGTAATCATACACACCAATGCCACGTTTTCTGCC
rJMFF037G05-          AGGGTTTGTGCTACCGGTTGCATTCCGGTAATCATACACACCAATGCCACGTTTTCTGCC
                      ____________________________________________________________
consensus             AGGGTTTGTGCTACCGGTTGCATTCCGGTAATCATACACACCAATGCCACGTTTTCTGCC
 
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JMFN030P11+           AAGTCTGCCTGCATCAACATACTGCACAAGGAGAGGGCATGGAGCATATTTAGTGTCCCC
rJMFF037G05-          AAGTCTGCCTGCATCAACATACTGCACAAGGAGAGGGCATGGAGCATATTTAGTGTCCCC
                      ____________________________________________________________
consensus             AAGTCTGCCTGCATCAACATACTGCACAAGGAGAGGGCATGGAGCATATTTAGTGTCCCC
 
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JMFN030P11+           CAGGCCGCCATGGAGGACTTTCAAAATTGCCAAGCAAACATCCAACCCGATAAAATCTGC
rJMFF037G05-          CAGGCCGCCATGGAGGACTTTCAAAATTGCCAAGCAAACATCCAACCCGATAAAATCTGC
                      ____________________________________________________________
consensus             CAGGCCGCCATGGAGGACTTTCAAAATTGCCAAGCAAACATCCAACCCGATAAAATCTGC
 
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JMFN030P11+           GAGTTCCAGAGGACCCATTGGATGGTTCGTTCCAAATTTCATTCCTGCATCAATGTCTTC
rJMFF037G05-          GAGTTCCAGAGGACCCATTGGATGGTTCGTTCCAAATTTCATTCCTGCATCAATGTCTTC
                      ____________________________________________________________
consensus             GAGTTCCAGAGGACCCATTGGATGGTTCGTTCCAAATTTCATTCCTGCATCAATGTCTTC
 
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JMFN030P11+           CTTAGCCGCGACTCCATTGTAGAGTGTATAAAATGCTTCGTTTATCATTGGCATCAAGAT
rJMFF037G05-          CTTAGCCGCGACTCCATTGTAGAGTGTATAAAATGCTTCGTTTATCATTGGCATCAAGAT
                      ____________________________________________________________
consensus             CTTAGCCGCGACTCCATTGTAGAGTGTATAAAATGCTTCGTTTATCATTGGCATCAAGAT
 
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JMFN030P11+           TCGATTCACAATAAAGCCAGCGTAATCCTGAGAGCAAAC                     
rJMFF037G05-          TCGATTCACAATAAAGCCAGCGTAATCCTGAGAGCAAACAACTGCCTTGCCAAACCTTTC
JMFF037G05+                                      CTGAGAGCAAACAACTGCCTTGCCAAACCTTTC
                      ____________________________________________________________
consensus             TCGATTCACAATAAAGCCAGCGTAATCCTGAGAGCAAACAACTGCCTTGCCAAACCTTTC
 
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rJMFF037G05-          TGCCAAGCTCTTTGTTACATTATATGTCTCATCCGATGTATCTGCACCCCTGATAATTTC
JMFF037G05+           TGCCAAGCTCTTTGTTACATTATATGTCTCATCCGATGTATCTGCACCCCTGATAATTTC
                      ____________________________________________________________
consensus             TGCCAAGCTCTTTGTTACATTATATGTCTCATCCGATGTATCTGCACCCCTGATAATTTC
 
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rJMFF037G05-          AACC                                                        
JMFF037G05+           AACCAGTTTCATAATGGGAGGAGGATTCATAAAATGCATGCCAATCACCTGTGTAGGACG
                      ____________________________________________________________
consensus             AACCAGTTTCATAATGGGAGGAGGATTCATAAAATGCATGCCAATCACCTGTGTAGGACG
 
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JMFF037G05+           ATTAGTTGCAGATGCCAAACGGGTAATGGAGATAGAGCTTGTGTTAGAAGCCAAGATTGC
                      ____________________________________________________________
consensus             ATTAGTTGCAGATGCCAAACGGGTAATGGAGATAGAGCTTGTGTTAGAAGCCAAGATTGC
 
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JMFF037G05+           AGAGCTCTTCACAATCTTGTCTAAATCAACAAACAGCTTTTTCTTCACAGATTCAGACTC
                      ____________________________________________________________
consensus             AGAGCTCTTCACAATCTTGTCTAAATCAACAAACAGCTTTTTCTTCACAGATTCAGACTC
 
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JMFF037G05+           CACAATAGCCTCAATAACAATATCCACAGACTGGAAATCTTCCAAATTCTGTGAACATNT
                      ____________________________________________________________
consensus             CACAATAGCCTCAATAACAATATCCACAGACTGGAAATCTTCCAAATTCTGTGAACATNT
 
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JMFF037G05+           TAGACGCCTGATTGCATCACCACCTCGTTCCTCAGAAAGTAGAGCTTTTGAGACGAGGCG
                      ____________________________________________________________
consensus             TAGACGCCTGATTGCATCACCACCTCGTTCCTCAGAAAGTAGAGCTTTTGAGACGAGGCG
 
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JMFF037G05+           TTGAATGTTACTAGAGATGGATTTTTGGGCTCTGTTAAGAGCTTCCGCTTCGGTATNGTA
                      ____________________________________________________________
consensus             TTGAATGTTACTAGAGATGGATTTTTGGGCTCTGTTAAGAGCTTCCGCTTCGGTATNGTA
 
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JMFF037G05+           AAGGCAAACGTCGACACCGTTCACGGCGGCCAGTTGGGCAATTCCAGAGCCCATTTGGCC
                      ____________________________________________________________
consensus             AAGGCAAACGTCGACACCGTTCACGGCGGCCAGTTGGGCAATTCCAGAGCCCATTTGGCC
 
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JMFF037G05+           TGCGCCGACTACCCCGATGCTCCTCACCGTCGCCATAGTCGTCTTCAGAAAGGACTCCCT
                      ____________________________________________________________
consensus             TGCGCCGACTACCCCGATGCTCCTCACCGTCGCCATAGTCGTCTTCAGAAAGGACTCCCT