Contig 008836:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036N05Sequence554008836 (2)ref|XP_006423022.1|2e-09hypothetical protein CICLE_v10028986mg [Citrus clementina] gb|ESR36262.1| hypoth739008836 (2)ref|XP_009598631.1|4e-40PREDICTED: LAG1 longevity assurance homolog 2-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF036N05-                                                               TTTTGTT
                      ____________________________________________________________
consensus                                                                  TTTTGTT
 
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rJMFF036N05-          TTATTTATTAATTAATTAATTATATTATGCTCCATTCTATCTACTCTACAACTGTATTCT
                      ____________________________________________________________
consensus             TTATTTATTAATTAATTAATTATATTATGCTCCATTCTATCTACTCTACAACTGTATTCT
 
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rJMFF036N05-          TTTAGCTGTTTCTATACCTGTTACAGACACTAACGACACACGGAACAACGTGTAGCATTA
                      ____________________________________________________________
consensus             TTTAGCTGTTTCTATACCTGTTACAGACACTAACGACACACGGAACAACGTGTAGCATTA
 
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rJMFF036N05-          AAATGTCATCTCATCTATGTCTAACTGAAAGGAAAACTAGAAAAAAGATCAGATGGAGAG
                      ____________________________________________________________
consensus             AAATGTCATCTCATCTATGTCTAACTGAAAGGAAAACTAGAAAAAAGATCAGATGGAGAG
 
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rJMFF036N05-          CCAAACTTACAACAACACAATCTAAAACCAATCTTCCAAGGCAGCTACAATGCAGGGTAA
                      ____________________________________________________________
consensus             CCAAACTTACAACAACACAATCTAAAACCAATCTTCCAAGGCAGCTACAATGCAGGGTAA
 
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rJMFF036N05-          GGACTAAGGAGTCAGAATATCTTTCCAACTAGTCTTCATCCTCTGAATCAGATCGTATAT
                      ____________________________________________________________
consensus             GGACTAAGGAGTCAGAATATCTTTCCAACTAGTCTTCATCCTCTGAATCAGATCGTATAT
 
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rJMFF036N05-          CTTCCCCAACTTGTCCTCTATTTTTCAATTGTCTACTGATCATTGAGCATATGAGAATCC
                      ____________________________________________________________
consensus             CTTCCCCAACTTGTCCTCTATTTTTCAATTGTCTACTGATCATTGAGCATATGAGAATCC
 
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rJMFF036N05-          ACCAATAGATGTGGAACACAAGGAGGCTCAACAACATAGTATTGAAGACGTAGTATAATA
                      ____________________________________________________________
consensus             ACCAATAGATGTGGAACACAAGGAGGCTCAACAACATAGTATTGAAGACGTAGTATAATA
 
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rJMFF036N05-          ACATATGACTTGGCTCTGGGAGCCTCAACACCTCGATCAGATAATAACTGGAAAGGAAAC
                      ____________________________________________________________
consensus             ACATATGACTTGGCTCTGGGAGCCTCAACACCTCGATCAGATAATAACTGGAAAGGAAAC
 
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rJMFF036N05-          CATAAGGTGAAGTGCAAACTTGATGGGTAGGCGGGGAATGTTAAGAACTACTAATTATAT
                      ____________________________________________________________
consensus             CATAAGGTGAAGTGCAAACTTGATGGGTAGGCGGGGAATGTTAAGAACTACTAATTATAT
 
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rJMFF036N05-          CACAAGTTACCTTGAAGATCTTATGACCCAAAATGGGAAAATAATTAGCCGGAGAACAAG
                      ____________________________________________________________
consensus             CACAAGTTACCTTGAAGATCTTATGACCCAAAATGGGAAAATAATTAGCCGGAGAACAAG
 
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rJMFF036N05-          CCATGAAATTGCAAATAGCCCAAAGAATAAGCTGGCACCAAACTCTTTCTCAGAGTATTT
JMFF036N05+                                                         TTCTCAGAGTATTT
                      ____________________________________________________________
consensus             CCATGAAATTGCAAATAGCCCAAAGAATAAGCTGGCACCAAACTCTTTCTCAGAGTATTT
 
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rJMFF036N05-          GAACACTTTAGCAGCTTCCATAAAGACATCACTAGCATCATGTAGTGCAAGAATAATCGA
JMFF036N05+           GAACACTTTAGCAGCTTCCATAAAGACATCACTAGCATCATGTAGTGCAAGAATAATCGA
                      ____________________________________________________________
consensus             GAACACTTTAGCAGCTTCCATAAAGACATCACTAGCATCATGTAGTGCAAGAATAATCGA
 
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rJMFF036N05-          TCCAATTCGAAA                                                
JMFF036N05+           TCCAATTCGAAAGAACCTGTGAAAATGGAAGCTTCATTTGTCATCCTACCATGCATCAAC
                      ____________________________________________________________
consensus             TCCAATTCGAAAGAACCTGTGAAAATGGAAGCTTCATTTGTCATCCTACCATGCATCAAC
 
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JMFF036N05+           TCTTAGATATTTTTCTTCATGACTAGAAAGATTTAACTAAATAAATTGATTGATAGTGCA
                      ____________________________________________________________
consensus             TCTTAGATATTTTTCTTCATGACTAGAAAGATTTAACTAAATAAATTGATTGATAGTGCA
 
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JMFF036N05+           CTTTGCCTTTAAGAATATATTGGCCATGTACAGGACCTCTGGGTTTCACTTAAGTCCAAC
                      ____________________________________________________________
consensus             CTTTGCCTTTAAGAATATATTGGCCATGTACAGGACCTCTGGGTTTCACTTAAGTCCAAC
 
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JMFF036N05+           ATATCAGCCATAGGCAGTGGTTAATAAAAAAATCTGGTTCTAGTTCAATCAGAGTCAATA
                      ____________________________________________________________
consensus             ATATCAGCCATAGGCAGTGGTTAATAAAAAAATCTGGTTCTAGTTCAATCAGAGTCAATA
 
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JMFF036N05+           AAGTAAATGATTCGGTTACCACTTGACCTTATACAATTAAATGATCTAGAGATCATGTTC
                      ____________________________________________________________
consensus             AAGTAAATGATTCGGTTACCACTTGACCTTATACAATTAAATGATCTAGAGATCATGTTC
 
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JMFF036N05+           CCTTCACTCTATCAAAGTTTCTTCACATTTGATGAACTAGTCAAGCAATAGGCGGTCTCA
                      ____________________________________________________________
consensus             CCTTCACTCTATCAAAGTTTCTTCACATTTGATGAACTAGTCAAGCAATAGGCGGTCTCA
 
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JMFF036N05+           GTTTTGCTGTTTTTTAGCAGGTGATGCTTTCGCTTCTTGGTAATAGTTTACTCAGAGATG
                      ____________________________________________________________
consensus             GTTTTGCTGTTTTTTAGCAGGTGATGCTTTCGCTTCTTGGTAATAGTTTACTCAGAGATG
 
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JMFF036N05+           GTTAACCAATCTGAGTTCTTCTATACGTTACTTCAGAAGAGGTTTGTGATAAGCACCAAG
                      ____________________________________________________________
consensus             GTTAACCAATCTGAGTTCTTCTATACGTTACTTCAGAAGAGGTTTGTGATAAGCACCAAG