clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF012C02 | Sequence | 609 | 008821 (12) | emb|CDO99108.1| | 3e-126 | unnamed protein product [Coffea canephora] | 806 | 008821 (12) | emb|CDO99108.1| | 9e-126 | unnamed protein product [Coffea canephora] |
JMFF018B19 | Sequence | 478 | 008821 (12) | emb|CDO99108.1| | 1e-91 | unnamed protein product [Coffea canephora] | 303 | 016951 | ref|XP_011073456.1| | 2e-04 | PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Sesamum indi |
JMFF024O21 | Sequence | 523 | 008821 (12) | emb|CDO99108.1| | 2e-96 | unnamed protein product [Coffea canephora] | 776 | 008821 (12) | ref|XP_010525225.1| | 2e-124 | PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya has |
JMFF034C09 | Sequence | 533 | 008821 (12) | emb|CDO99108.1| | 6e-98 | unnamed protein product [Coffea canephora] | 694 | 008821 (12) | ref|XP_010525225.1| | 7e-105 | PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya has |
JMFF040K01 | Sequence | 691 | 008821 (12) | ref|XP_010525225.1| | 6e-105 | PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya has | |||||
JMFN003F08 | Sequence | 634 | 008821 (12) | ref|XP_009587300.1| | 2e-132 | PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 {ECO:0000255| | |||||
JMFN009E01 | Sequence | 614 | 008821 (12) | ref|XP_011073456.1| | 2e-71 | PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Sesamum indi | |||||
JMSF001P08 | Sequence | 224 | 008821 (12) | ref|XP_009587300.1| | 1e-21 | PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 {ECO:0000255| | 769 | 008821 (12) | emb|CDO99108.1| | 4e-126 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFN009E01- GAACTAGTCTCGAGXXXXXXXXXXXXXXXXX
____________________________________________________________
consensus GAACTAGTCTCGAGNNNNNNNNNNNNNNNNN
. : . : . : . : . : . :
JMFN009E01- XXXXXXXATTCCAACACCGTTATTACTATTATAAAGTGAATATGGTATTGTACAAACAGA
rJMFF034C09- AAGTGAATATGGTATTGTACAAACAGA
rJMFF040K01- GTGAATATGGTATTGTACAAACAGA
rJMFF024O21- AAGTGAATATGGTATTGTACAAACAGA
rJMSF001P08- AACAGA
____________________________________________________________
consensus NNNNNNNATTCCAACACCGTTATTACTATTATAAAGTGAATATGGTATTGTACAAACAGA
. : . : . : . : . : . :
JMFN009E01- AGCAAAAGACACAGAACAGTCACCCATACAACAAGGGTGGGATTATTATGATATTATCAC
rJMFF034C09- AGCAAAAGACACAGAACAGTCACCCATACAACAAGGGTGGGATTATTATGATATTATCAC
rJMFF040K01- AGCAAAAGACACAGAACAGTCACCCATACAACAAGGGTGGGATTATTATGATATTATCAC
rJMFF024O21- AGCAAAAGACACAGAACAGTCACCCATACAACAAGGGTGGGATTATTATGATATTATCAC
rJMSF001P08- AGCAAAAGACACAGAACAGTCACCCATACAACAAGGGTGGGATTATTATGATATTATCAC
rJMFF012C02- ATTATTATGATATTATCAC
____________________________________________________________
consensus AGCAAAAGACACAGAACAGTCACCCATACAACAAGGGTGGGATTATTATGATATTATCAC
. : . : . : . : . : . :
JMFN009E01- AATAACAGATTTACCAGATCGGATAGTCTAAGATTTCTGGGTTGTATAATAGGTAGAATG
rJMFF034C09- AATAACAGATTTACCAGATCGGATAGTCTAAGATTTCTGGGTTGTATAATAGGTAGAATG
rJMFF040K01- AATAACAGATTTACCAGATCGGATAGTCTAAGATTTCTGGGTTGTATAATAGGTAGAATG
rJMFF024O21- AATAACAGATTTACCAGATCGGATAGTCTAAGATTTCTGGGTTGTATAATAGGTAGAATG
rJMSF001P08- AATAACAGATTTACCAGATCGGATAGTCTAAGATTTCTGGGTTGTATAATAGGTAGAATG
rJMFF012C02- AATAACAGATTTACCAGATCGGATAGTCTAAGATTTCTGGGTTGTATAATAGGTAGAATG
____________________________________________________________
consensus AATAACAGATTTACCAGATCGGATAGTCTAAGATTTCTGGGTTGTATAATAGGTAGAATG
. : . : . : . : . : . :
JMFN009E01- TTAAATTAAAGCTGCAGCAGCTATGGAGTTTACTTAAGCAGCAGCATTAACTGCATGGCC
rJMFF034C09- TTAAATTAAAGCTGCAGCAGCTATGGAGTTTACTTAAGCAGCAGCATTAACTGCATGGCC
rJMFF040K01- TTAAATTAAAGCTGCAGCAGCTATGGAGTTTACTTAAGCAGCAGCATTAACTGCATGGCC
rJMFF024O21- TTAAATTAAAGCTGCAGCAGCTATGGAGTTTACTTAAGCAGCAGCATTAACTGCATGGCC
rJMSF001P08- TTAAATTAAAGCTGCAGCAGCTATGGAGTTTACTTAAGCAGCAGCATTAACTGCATGGCC
rJMFF012C02- TTAAATTAAAGCTGCAGCAGCTATGGAGTTTACTTAAGCAGCAGCATTAACTGCATGGCC
JMFN003F08+ AGCAGCAGCATTAACTGCATGGCC
____________________________________________________________
consensus TTAAATTAAAGCTGCAGCAGCTATGGAGTTTACTTAAGCAGCAGCATTAACTGCATGGCC
. : . : . : . : . : . :
JMFN009E01- AGTACCATCATTCTTCTGCACAAATGTTTCAATGTATTCTTTCCTTGCAGGGAGATGGTC
rJMFF034C09- AGTACCATCATTCTTCTGCACAAATGTTTCAATGTATTCTTTCCTTGCAGGGAGATGGTC
rJMFF040K01- AGTACCATCATTCTTCTGCACAAATGTTTCAATGTATTCTTTCCTTGCAGGGAGATGGTC
rJMFF024O21- AGTACCATCATTCTTCTGCACAAATGTTTCAATGTATTCTTTCCTTGCAGGGAGATGGTC
rJMSF001P08- AGTACCATCATTCTTCTGCACAAATGTTTCAATGTATTCTTTCCTTGCAGGGAGATGGTC
rJMFF012C02- AGTACCATCATTCTTCTGCACAAATGTTTCAATGTATTCTTTCCTTGCAGGGAGATGGTC
JMFN003F08+ AGTACCATCATTCTTCTGCACAAATGTTTCAATGTATTCTTTCCTTGCAGGGAGATGGTC
JMFF012C02+ TGCACAAATGTTTCAATGTATTCTTTCCTNGCAGGGAGATGGTC
____________________________________________________________
consensus AGTACCATCATTCTTCTGCACAAATGTTTCAATGTATTCTTTCCTTGCAGGGAGATGGTC
. : . : . : . : . : . :
JMFN009E01- ATGTGGACGGTTGAATGGGGTCCAGACTGGGTCACCGACAAAGAGCCTCATTGCCTTAAT
rJMFF034C09- ATGTGGACGGTTGAATGGGGTCCAGACTGGGTCACCGACAAAGAGCCTCATTGCCTTAAT
rJMFF040K01- ATGTGGACGGTTGAATGGGGTCCAGACTGGGTCACCGACAAAGAGCCTCATTGCCTTAAT
rJMFF024O21- ATGTGGACGGTTGAATGGGGTCCAGACTGGGTCACCGACAAAGAGCCTCATTGCCTTAAT
rJMSF001P08- ATGTGGACGGTTGAATGGGGTCCAGACTGGGTCACCGACAAAGAGCCTCATTGCCTTAAT
rJMFF012C02- ATGTGGACGGTTGAATGGGGTCCAGACTGGGTCACCGACAAAGAGCCTCATTGCCTTAAT
JMFN003F08+ ATGTGGACGGTTGAATGGGGTCCAGACTGGGTCACCGACAAAGAGCCTCATTGCCTTAAT
JMFF012C02+ ATGTGGACGGTTGAATGGGGTCCAGACTGGGTCACCGACAAAGAGCCTCATTGCCTTAAT
____________________________________________________________
consensus ATGTGGACGGTTGAATGGGGTCCAGACTGGGTCACCGACAAAGAGCCTCATTGCCTTAAT
. : . : . : . : . : . :
JMFN009E01- GTAGTTGTCTGAATCAAGGGTAAAACGGTGATAAATTCCAGCAGGCAGAACAATCATTGC
rJMFF034C09- GTAGTTGTCTGAATCAAGGGTAAAACGGTGATAAATTCCAGCAGGCAGAACAATCATTGC
rJMFF040K01- GTAGTTGTCTGAATCAAGGGTAAAACGGTGATAAATTCCAGCAGGCAGAACAATCATTGC
rJMFF024O21- GTAGTTGTCTGAATCAAGGGTAAAACGGTGATAAATTCCAGCAGGCAGAACAATCATTGC
rJMSF001P08- GTAGTTGTCTGAATCAAGGGTAAAACGGTGATAAATTCCAGCAGGCAGAACAATCATTGC
rJMFF012C02- GTAGTTGTCTGAATCAAGGGTAAAACGGTGATAAATTCCAGCAGGCAGAACAATCATTGC
JMFN003F08+ GTAGTTGTCTGAATCAAGGGTAAAACGGTGATAAATTCCAGCAGGCAGAACAATCATTGC
JMFF012C02+ GTAGTTGTCTGAATCAAGGGTAAAACGGTGATAAATTCCAGCAGGCAGAACAATCATTGC
JMFF018B19+ AATTCCAGCAGGCAGAACAATCATTGC
JMFF024O21+ TCAAGGGTAAAACGGTGATAAATTCCAGCAGGCAGAACAATCATTGC
JMFF034C09+ TCTGAATCAAGGGTAAAACGGTGATAAATTCCAGCAGGCAGAACAATCATTGC
____________________________________________________________
consensus GTAGTTGTCTGAATCAAGGGTAAAACGGTGATAAATTCCAGCAGGCAGAACAATCATTGC
. : . : . : . : . : . :
JMFN009E01- CCCTTTCTTCACCCAGATGCGGATCCATTCCTCATTCTTGTCACGCACATCAAAATAGCC
rJMFF034C09- CCCTTTCTTCACCCAGATGCGGATCCATTCCTCATTCTTGTCACGCACATCAAAATAGCC
rJMFF040K01- CCCTTTCTTCACCCAGATGCGGATCCATTCCTCATTCTTGTCACGCACATCAAAATAGCC
rJMFF024O21- CCCTTTCTTCACCCAGATGCGGATCCATTCCTCATTCTTGTCACGCACATCAAAATAGCC
rJMSF001P08- CCCTTTCTTCACCCAGATGCGGATCCATTCCTCATTCTTGTCACGCACATCAAAATAGCC
rJMFF012C02- CCCTTTCTTCACCCAGATGCGGATCCATTCCTCATTCTTGTCACGCACATCAAAATAGCC
JMFN003F08+ CCCTTTCTTCACCCAGATGCGGATCCATTCCTCATTCTTGTCACGCACATCAAAATAGCC
JMFF012C02+ CCCTTTCTTCACCCAGATGCGGATCCATTCCTCATTCTTGTCACGCACATCAAAATAGCC
JMFF018B19+ CCCTTTCTTCACCCAGATGCGGATCCATTCCTCATTCTTGTCACGCACATCAAAATAGCC
JMFF024O21+ CCCTTTCTTCACCCAGATGCGGATCCATTCCTCATTCTTGTCACGCACATCAAAATAGCC
JMFF034C09+ CCCTTTCTTCACCCAGATGCGGATCCATTCCTCATTCTTGTCACGCACATCAAAATAGCC
____________________________________________________________
consensus CCCTTTCTTCACCCAGATGCGGATCCATTCCTCATTCTTGTCACGCACATCAAAATAGCC
. : . : . : . : . : . :
JMFN009E01- ACTCCCAGCAACACAGTAGCGGATTTCCTCATCTGTGTGCAGATGCTCTTCAAAGAAGCT
rJMFF034C09- ACTCCCAGCAACACAGTAGCGGATTTCCTCATCTGTGTGCAGATGCTCTTCAAAGAAGCT
rJMFF040K01- ACTCCCAGCAACACAGTAGCGGATTTCCTCATCTGTGTGCAGATGCTCTTCAAAGAAGCT
rJMFF024O21- ACTCCCAGCAACACAGTAGCGGATTTCCTCATCTGTGTGCAGATGCTCTTCAAAGAAGCT
rJMSF001P08- ACTCCCAGCAACACAGTAGCGGATTTCCTCATCTGTGTGCAGATGCTCTTCAAAGAAGCT
rJMFF012C02- ACTCCCAGCAACACAGTAGCGGATTTCCTCATCTGTGTGCAGATGCTCTTCAAAGAAGCT
JMFN003F08+ ACTCCCAGCAACACAGTAGCGGATTTCCTCATCTGTGTGCAGATGCTCTTCAAAGAAGCT
JMFF012C02+ ACTCCCAGCAACACAGTAGCGGATTTCCTCATCTGTGTGCAGATGCTCTTCAAAGAAGCT
JMFF018B19+ ACTCCCAGCAACACAGTAGCGGATTTCCTCATCTGTGTGCAGATGCTCTTCAAAGAAGCT
JMFF024O21+ ACTCCCAGCAACACAGTAGCGGATTTCCTCATCTGTGTGCAGATGCTCTTCAAAGAAGCT
JMFF034C09+ ACTCCCAGCAACACAGTAGCGGATTTCCTCATCTGTGTGCAGATGCTCTTCAAAGAAGCT
____________________________________________________________
consensus ACTCCCAGCAACACAGTAGCGGATTTCCTCATCTGTGTGCAGATGCTCTTCAAAGAAGCT
. : . : . : . : . : . :
JMFN009E01- CTTGATCTTCTCTTCATAATTCGGCAACTTCTCAGGGCAAACC
rJMFF034C09- CTTGATCTTCTCTTCATAATTCGGCAACTTCTCAGGGCAAACCTCGCAGAAGTCCATGTA
rJMFF040K01- CTTGATCTTCTCTTCATAATTCGGCAACTTCTCAGGGCAAACCTCGCAGAAGTCCATGTA
rJMFF024O21- CTTGATCTTCTCTTCATAATTCGGCAACTTCTCAGGGCAAACCTCGCAGAAGTCCATGTA
rJMSF001P08- CTTGATCTTCTCTTCATAATTCGGCAACTTCTCAGGGCAAACCTCGCAGAAGTCCATGTA
rJMFF012C02- CTTGATCTTCTCTTCATAATTCGGCAACTTCTCAGGGCAAACCTCGCAGAAGTCCATGTA
JMFN003F08+ CTTGATCTTCTCTTCATAATTCGGCAACTTCTCAGGGCAAACCTCGCAGAAGTCCATGTA
JMFF012C02+ CTTGATCTTCTCTTCATAATTCGGCAACTTCTCAGGGCAAACCTCGCAGAAGTCCATGTA
JMFF018B19+ CTTGATCTTCTCTTCATAATTCGGCAACTTCTCAGGGCAAACCTCGCAGAAGTCCATGTA
JMFF024O21+ CTTGATCTTCTCTTCATAATTCGGCAACTTCTCAGGGCAAACCTCGCAGAAGTCCATGTA
JMFF034C09+ CTTGATCTTCTCTTCATAATTCGGCAACTTCTCAGGGCAAACCTCGCAGAAGTCCATGTA
____________________________________________________________
consensus CTTGATCTTCTCTTCATAATTCGGCAACTTCTCAGGGCAAACCTCGCAGAAGTCCATGTA
. : . : . : . : . : . :
rJMFF034C09- TGAATATCCTCGGGATTCACGGATTTTCTTCAACTCCTCATCTGTTTCATATTTGTCAGC
rJMFF040K01- TGAATATCCTCGGGATTCACGGATTTTCTTCAACTCCTCATCTGTTTCATATTTGTCAGC
rJMFF024O21- TGAATATCCTCGGGATTCACGGATTTTCTTCAACTCCTCATCTGTTTCATATTTGTCAGC
rJMSF001P08- TGAATATCCTCGGGATTCACGGATTTTCTTCAACTCCTCATCTGTTTCATATTTGTCAGC
rJMFF012C02- TGAATATCCTCGGGATTCACGGATTTTCTTCAACTCCTCATCTGTTTCATATTTGTCAGC
JMFN003F08+ TGAATATCCTCGGGATTCACGGATTTTCTTCAACTCCTCATCTGTTTCATATTTGTCAGC
JMFF012C02+ TGAATATCCTCGGGATTCACGGATTTTCTTCAACTCCTCATCTGTTTCATATTTGTCAGC
JMFF018B19+ TGAATATCCTCGGGATTCACGGATTTTCTTCAACTCCTCATCTGTTTCATATTTGTCAGC
JMFF024O21+ TGAATATCCTCGGGATTCACGGATTTTCTTCAACTCCTCATCTGTTTCATATTTGTCAGC
JMFF034C09+ TGAATATCCTCGGGATTCACGGATTTTCTTCAACTCCTCATCTGTTTCATATTTGTCAGC
____________________________________________________________
consensus TGAATATCCTCGGGATTCACGGATTTTCTTCAACTCCTCATCTGTTTCATATTTGTCAGC
. : . : . : . : . : . :
rJMFF034C09- ATCCAACCTCCAGCTGAGCACTCCAAGCTCAGCAAGTTTGTCAAGGGAGACAAACTGCTT
rJMFF040K01- ATCCAACCTCCAGCTGAGCACTCCAAGCTCAGCAAGTTTGTCAAGGGAGACAAACTGCTT
rJMFF024O21- ATCCAACCTCCAGCTGAGCACTCCAAGCTCAGCAAGTTTGTCAAGGGAGACAAACTGCTT
rJMSF001P08- ATCCAACCTCCAGCTGAGCACTCCAAGCTCAGCAAGTTTGTCAAGGGAGACAAACTGCTT
rJMFF012C02- ATCCAACCTCCAGCTGAGCACTCCAAGCTCAGTAAGTTTGTCAAGGGAGACAAACTGCTT
JMFN003F08+ ATCCAACCTCCAGCTGAGCACTCCAAGCTCAGCAAGTTTGTCAAGGGAGACAAACTGCTT
JMFF012C02+ ATCCAACCTCCAGCTGAGCACTCCAAGCTCAGTAAGTTTGTCAAGGGAGACAAACTGCTT
JMFF018B19+ ATCCAACCTCCAGCTGAGCACTCCAAGCTCAGCAAGTTTGTCAAGGGAGACAAACTGCTT
JMFF024O21+ ATCCAACCTCCAGCTGAGCACTCCAAGCTCAGCAAGTTTGTCAAGGGAGACAAACTGCTT
JMSF001P08+ CTGAGCACTCCAAGCTCAGCAAGTTTGTCAAGGGAGACAAACTGCTT
JMFF034C09+ ATCCAACCTCCAGCTGAGCACTCCAAGCTCAGCAAGTTTGTCAAGGGAGACAAACTGCTT
____________________________________________________________
consensus ATCCAACCTCCAGCTGAGCACTCCAAGCTCAGCAAGTTTGTCAAGGGAGACAAACTGCTT
. : . : . : . : . : . :
rJMFF034C09- TGGCTCA
rJMFF040K01- TGGCTC
rJMFF024O21- TGGCTCACGGTGATGGGGAAGCCTCTGATCTTCATTGCTATCATCCATATACCATGCCTG
rJMSF001P08- TGGCTCACGGTGATGGGGAAGCCTCTGATCTTCATTGCTATCATCCATATACCATGCCTG
rJMFF012C02- TGGCTCACGGTGATGGGGAAGCCTCTGATCTTCATTGCTATCATCCATATACCATGCCTG
JMFN003F08+ TGGCTCACGGTGATGGGGAAGCCTCTGATCTTCATTGCTATCATCCATATACCATGCCTG
JMFF012C02+ TGGCTCACGGTGATGGGGAAGCCTCTGATCTTCATTGCTATCATCCATATACCATGCCTG
JMFF018B19+ TGGCTCACGGTGATGGGGAAGCCTCTGATCTTCATTGCTATCATCCATATACCATGCCTG
JMFF024O21+ TGGCTCACGGTGATGGGGAAGCCTCTGATCTTCATTGCTATCATCCATATACCATGCCTG
JMSF001P08+ TGGCTCACGGTGATGGGGAAGCCTCTGATCTTCATTGCTATCATCCATATACCATGCCTG
JMFF034C09+ TGGCTCACGGTGATGGGGAAGCCTCTGATCTTCATTGCTATCATCCATATACCATGCCTG
____________________________________________________________
consensus TGGCTCACGGTGATGGGGAAGCCTCTGATCTTCATTGCTATCATCCATATACCATGCCTG
. : . : . : . : . : . :
rJMFF024O21- AATAATTTCCTCCCTGCTATCCTTCT
rJMSF001P08- AATAATTTCCTCCCTGCTATCCTTCTCAATGGAGCCNATTTTT
rJMFF012C02- AATAATTTCCTCCCTGCTATCCTTCTCANTTGAGCCCATTTTTTCACGG
JMFN003F08+ AATAATTTCCTCCCTGCTATCCTTCTCAATTGAGCCCATTTTTTCACGGCTTAGAATTCT
JMFF012C02+ AATAATTTCCTCCCTGCTATCCTTCTCAATTGAGCCCATTTTTTCACGGCTTAGAATTCT
JMFF018B19+ AATAATTTCCTCCCTGCTATCCTTCTCAATTGAGCCCATTTTTTCACGGCTTAGAATTCT
JMFF024O21+ AATAATTTCCTCCCTGCTATCCTTCTCAATTGAGCCCATTTTTTCACGGCTTAGAATTCT
JMSF001P08+ AATAATTTCCTCCCTGCTATCCTTCTCAATTGAGCCCATTTTTTCACGGCTTAGAATTCT
JMFF034C09+ AATAATTTCCTCCCTGCTATCCTTCTCAATTGAGCCCATTTTTTCACGGCTTAGAATTCT
____________________________________________________________
consensus AATAATTTCCTCCCTGCTATCCTTCTCAATTGAGCCCATTTTTTCACGGCTTAGAATTCT
. : . : . : . : . : . :
JMFN003F08+ CCCCGCAAAA
JMFF012C02+ CCCCGCAAAAAGATGTATGAAAAGT
JMFF018B19+ CCCCGCAAAAAGATGTATGAAAAGTGTTTCT
JMFF024O21+ CCCCGCAAAAAGATGTATGAAAAGTGTTTCTGTATGTTTCGGATAGAGCCCCCCT
JMSF001P08+ CCCCGCAAAAAGATGTATGAAAAGTGTTTCTGTATGTTTCGGATAGAGCCCCCCT
JMFF034C09+ CCCCGCAAAAAGATGTATGAAAAGTGTTTCTGTATGTTTCGGATAGAGCCCCCCTCAAAT
____________________________________________________________
consensus CCCCGCAAAAAGATGTATGAAAAGTGTTTCTGTATGTTTCGGATAGAGCCCCCCTCAAAT