Contig 008815:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020A10Sequence524008815 (2)ref|XP_009608593.1|2e-41PREDICTED: RNA-binding protein Musashi homolog 2 isoform X1 [Nicotiana tomentos663012443 (5)emb|CDP02498.1|5e-47unnamed protein product [Coffea canephora]
JMFF032D01Sequence446008815 (2)ref|XP_011099132.1|8e-26PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like 2 [Sesamum indicum]644012443 (5)emb|CDP02498.1|2e-34unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF020A10+                           TGTCGCTATTTTTACTTCCAGCACTCTGTTTCCAAGGAAGTGCT
                      ____________________________________________________________
consensus                             TGTCGCTATTTTTACTTCCAGCACTCTGTTTCCAAGGAAGTGCT
 
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JMFF020A10+           CCTTAGATAATGCATTCTTAGCATCCTCAGCTGTTGCAAATGTTACATAGCCAAACCCTC
JMFF032D01+                                             TGCAAATGTTACATAGCCAAACCCTC
                      ____________________________________________________________
consensus             CCTTAGATAATGCATTCTTAGCATCCTCAGCTGTTGCAAATGTTACATAGCCAAACCCTC
 
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JMFF020A10+           GAGAACGGCCAGTGGATCGTTCCTTCATTACAATACAGTCTTCCAATTCCCCAAATTTGC
JMFF032D01+           GAGAACGGCCAGTGGATCGTTCCTTCATTACAATACAGTCTTCCAATTCCCCAAATTTGC
                      ____________________________________________________________
consensus             GAGAACGGCCAGTGGATCGTTCCTTCATTACAATACAGTCTTCCAATTCCCCAAATTTGC
 
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JMFF020A10+           ACATGTATTCTCTTAAGCCCTCGGTATCAATGTCCCAAGGGATACCCAAAACAACAAGCT
JMFF032D01+           ACATGTATTCTCTTAAGCCCTCGGTATCAATGTCCCAAGGGATACCCAAAACAACAAGCT
                      ____________________________________________________________
consensus             ACATGTATTCTCTTAAGCCCTCGGTATCAATGTCCCAAGGGATACCCAAAACAACAAGCT
 
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JMFF020A10+           TCCTATCCGACATGGTAAAAGGGGGCGCAAAGACAAATCTAGCTGCAGAGATAAAAAATC
JMFF032D01+           TCCTATCCGACATGGTAAAAGGGGGCGCAAAGACAAATCTAGCTGCAGAGATAAAAAATC
                      ____________________________________________________________
consensus             TCCTATCCGACATGGTAAAAGGGGGCGCAAAGACAAATCTAGCTGCAGAGATAAAAAATC
 
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JMFF020A10+           GCTCGAGACACACACAATTTCTCTCCTCTGTTCCTCTTGCGCTCTCGCGATCCCACCACC
JMFF032D01+           GCTCGAGACACACACAATTTCTCTCCTCTGTTCCTCTTGCGCTCTCGCGATCCCACCACC
                      ____________________________________________________________
consensus             GCTCGAGACACACACAATTTCTCTCCTCTGTTCCTCTTGCGCTCTCGCGATCCCACCACC
 
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JMFF020A10+           TCCCTCTCTACAAATCAAGCGCTCACACTCGACGACGATGAGGAGAAATCCTTGGGCGAT
JMFF032D01+           TCCCTCTCTACAAATCAAGCGCTCACACTCGACGACGATGAGGAGAAATCCTTGGGCGAT
                      ____________________________________________________________
consensus             TCCCTCTCTACAAATCAAGCGCTCACACTCGACGACGATGAGGAGAAATCCTTGGGCGAT
 
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JMFF020A10+           TCAGATTTTCAAAACCCTAACTCGCTCTCTCTCGCTCGCTAACTCGCTCGACTCGCGCTC
JMFF032D01+           TCAGATTTTCAAAACCCTAACTCGCTCTCTCTCGCTCGCTAACTCGCTCGACTCGCGCTC
                      ____________________________________________________________
consensus             TCAGATTTTCAAAACCCTAACTCGCTCTCTCTCGCTCGCTAACTCGCTCGACTCGCGCTC
 
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JMFF020A10+           TTCCTCTCGCCGCTCAGCGACTCCGTTTCAAACCCAATCTACTCATCCTGTACCCAAC  
JMFF032D01+           TTCCTCTCGCCGCTCAGCGACTCCGTTTCAAACCCAATCTACTCATCCTGTACCCAACAC
                      ____________________________________________________________
consensus             TTCCTCTCGCCGCTCAGCGACTCCGTTTCAAACCCAATCTACTCATCCTGTACCCAACAC