Contig 008813:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031I19Sequence471008813 (5)ref|XP_002514162.1|1e-58hydrogen-transporting ATP synthase, rotational mechanism, putative [Ricinus com632008813 (5)ref|XP_002514162.1|2e-65hydrogen-transporting ATP synthase, rotational mechanism, putative [Ricinus com
JMFN044H05Sequence627008813 (5)ref|XP_002514162.1|3e-69hydrogen-transporting ATP synthase, rotational mechanism, putative [Ricinus com
JMSF020P11Sequence674008813 (5)ref|XP_002514162.1|5e-69hydrogen-transporting ATP synthase, rotational mechanism, putative [Ricinus com749008813 (5)ref|XP_002514162.1|1e-68hydrogen-transporting ATP synthase, rotational mechanism, putative [Ricinus com

Alignment

This contig is upended


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rJMFF031I19-                                                                GGGGAG
                      ____________________________________________________________
consensus                                                                   GGGGAG
 
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rJMFF031I19-          TTCAAACTCGCAGTCGCATAACATTTTTGTTACTTATGATAGTTTCAACATCAAAACATA
rJMSF020P11-              AACTCGCAGTCGCATAACATTTTTGTTACTTATGATAGTTTCAACATCAAAACATA
                      ____________________________________________________________
consensus             TTCAAACTCGCAGTCGCATAACATTTTTGTTACTTATGATAGTTTCAACATCAAAACATA
 
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rJMFF031I19-          TTAAGAACACCACTACATAGTTCATCAACCTAGGTGCCTCTGACTCTGAGGGTAGAAAAA
JMFN044H05+                          CATAGTTCATCAACCTAGGTGCCTCTGACTCTGAGGGTAGAAAAA
rJMSF020P11-          TTAAGAACACCACTACATAGTTCATCAACCTAGGTGCCTCTGACTCTGAGGGTAGAAAAA
JMSF020P11+                                                     ACTCTGAGGGTAGAAAAA
                      ____________________________________________________________
consensus             TTAAGAACACCACTACATAGTTCATCAACCTAGGTGCCTCTGACTCTGAGGGTAGAAAAA
 
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rJMFF031I19-          TTGGCACAGATTATTACAGCAAACAAATTTAGTCACTGATTTCTCAGCTTCAAAAATGTT
JMFN044H05+           TTGGCACAGATTATTACAGCAAACAAATTTAGTCACTGATTTCTCAGCTTCAAAAATGTT
rJMSF020P11-          TTGGCACAGATTATTACAGCAAACAAATTTAGTCACTGATTTCTCAGCTTCAAAAATGTT
JMSF020P11+           TTGGCACAGATTATTACAGCAAACAAATTTAGTCACTGATTTCTCAGCTTCAAAAATGTT
                      ____________________________________________________________
consensus             TTGGCACAGATTATTACAGCAAACAAATTTAGTCACTGATTTCTCAGCTTCAAAAATGTT
 
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rJMFF031I19-          TTGGAAGACAAAACCTCGCAGTATTGAGTGCCAGTCGCTCAGATTATCCTAACCAAGACA
JMFN044H05+           TTGGAAGACAAAACCTTGCAGTATTGAGTGCCAGTCGCTCAGATTATCCTAACCAAGACA
rJMSF020P11-          TTGGAAGACAAAACCTTGCAGTATTGAGTGCCAGTCGCTCAGATTATCCTAACCAAGACA
JMSF020P11+           TTGGAAGACAAAACCTTGCAGTATTGAGTGCCAGTCGCTCAGATTATCCTAACCAAGACA
                      ____________________________________________________________
consensus             TTGGAAGACAAAACCTTGCAGTATTGAGTGCCAGTCGCTCAGATTATCCTAACCAAGACA
 
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rJMFF031I19-          GAAAGATTGTGGTTACCCAGCTGGTTCTTTTCAGGGATAGTAACCGGTGAACGTAAATCC
JMFN044H05+           GAAAGATTGTGGTTACCCAGCTGGTTCTTTTCAGGGATAGTAACCGGTGAACGTAAATCC
rJMSF020P11-          GAAAGATTGTGGTTACCCAGCTGGTTCTTTTCAGGGATAGTAACCGGTGAACGTAAATCC
JMSF020P11+           GAAAGATTGTGGTTACCCAGCTGGTTCTTTTCAGGGATAGTAACCGGTGAACGTAAATCC
                      ____________________________________________________________
consensus             GAAAGATTGTGGTTACCCAGCTGGTTCTTTTCAGGGATAGTAACCGGTGAACGTAAATCC
 
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rJMFF031I19-          CCTTCCTACTATCTCTCCAGCACAATACCATGCAAAGCATTCGAGGCCGAATAAAGCAGC
JMFN044H05+           CCTTCCTACTATCTCTCCAGCACAATACCATGCAAAGCATTCGAGGCCGAATAAAGCAGC
rJMSF020P11-          CCTTCCTACTATCTCTCCAGCACAATACCATGCAAAGCATTCGAGGCCGAATAAAGCAGC
JMSF020P11+           CCTTCCTACTATCTCTCCAGCACAATACCATGCAAAGCATTCGAGGCCGAATAAAGCAGC
JMFF031I19+                    TATCTCTCCAGCACAATACCATGCAAAGCATTCGAGGCCGAATAAAGCAGC
                      ____________________________________________________________
consensus             CCTTCCTACTATCTCTCCAGCACAATACCATGCAAAGCATTCGAGGCCGAATAAAGCAGC
 
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rJMFF031I19-          TGTGCCAGCATCCTCGACCTTCAATTCGTGCCTATTCTTCCATGCCTGCTTGACATAATC
JMFN044H05+           TGTGCCAGCATCCTCGACCTTCAATTCGTGCCTATTCTTCCATGCCTGCTTGACATAATC
rJMSF020P11-          TGTGCCAGCATCCTCGACCTTCAATTCGTGCCTATTCTTCCATGCCTGCTTGACATAATC
JMSF020P11+           TGTGCCAGCATCCTCGACCTTCAATTCGTGCCTATTCTTCCATGCCTGCTTGACATAATC
JMFF031I19+           TGTGCCAGCATCCTCGACCTTCAATTCGTGCCTATTCTTCCATGCCTGCTTGACATAATC
                      ____________________________________________________________
consensus             TGTGCCAGCATCCTCGACCTTCAATTCGTGCCTATTCTTCCATGCCTGCTTGACATAATC
 
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rJMFF031I19-          AACTTCCTCCCAAAAGGCCTGGTTACGGCTGGGGATACTGGCAAGACGAGTGTAGAAGAG
JMFN044H05+           AACTTCCTTCCAAAAGGCCTGGTTACGGCTGGGGATACTGGCAAGACGAGTGTAGAAGAG
rJMSF020P11-          AACTTCCTTCCAAAAGGCCTGGTTACGGCTGGGGATACTGGCAAGACGAGTGTAGAAGAG
JMSF020P11+           AACTTCCTTCCAAAAGGCCTGGTTACGGCTGGGGATACTGGCAAGACGAGTGTAGAAGAG
JMFF031I19+           AACTTCCTCCCAAAAGGCCTGGTTACGGCTGGGGATACTGGCAAGACGAGTGTAGAAGAG
                      ____________________________________________________________
consensus             AACTTCCTTCCAAAAGGCCTGGTTACGGCTGGGGATACTGGCAAGACGAGTGTAGAAGAG
 
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rJMFF031I19-          CTGTTTAGATAATTCATTGCACTTTTCCACAGTGGATGGCTCCACAATATACTGCTTGTT
JMFN044H05+           CTGTTTAGATAATTCATTGCACTTTTCCACAGTGGATGGCTCCACAATATACTGCTTGTT
rJMSF020P11-          CTGTTTAGATAATTCATTGCACTTTTCCACAGTGGATGGCTCCACAATATACTGCTTGTT
JMSF020P11+           CTGTTTAGATAATTCATTGCACTTTTCCACAGTGGATGGCTCCACAATATACTGCTTGTT
JMFF031I19+           CTGTTTAGATAATTCATTGCACTTTTCCACAGTGGATGGCTCCACAATATACTGCTTGTT
                      ____________________________________________________________
consensus             CTGTTTAGATAATTCATTGCACTTTTCCACAGTGGATGGCTCCACAATATACTGCTTGTT
 
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rJMFF031I19-          CTGATCCAATGTCTGTTTGTAGATAGCACAACTATGCTTGGTAATAAACTGTTTCGCTTG
JMFN044H05+           CTGATCCAATGTCTGTTTGTAGATAGCACAACTATGCTTGGTAATAAACTGTTTCGCTTG
rJMSF020P11-          CTGATCCAATGTCTGTTTGTAGATAGCACAACTATGCTTGGTAATAAACTGTTTCGCTTG
JMSF020P11+           CTGATCCAATGTCTGTTTGTAGATAGCACAACTATGCTTGGTAATAAACTGTTTCGCTTG
JMFF031I19+           CTGATCCAATGTCTGTTTGTAGATAGCACAACTATGCTTGGTAATAAACTGTTTCGCTTG
                      ____________________________________________________________
consensus             CTGATCCAATGTCTGTTTGTAGATAGCACAACTATGCTTGGTAATAAACTGTTTCGCTTG
 
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rJMFF031I19-          GCATGCCTTTGCTTGCAGTTGATGAA                                  
JMFN044H05+           GCATGCCTTTGCTTGCAGTTGATGAAACTTGGATGCCATTAATTCTTCTTTTTAAAATAT
rJMSF020P11-          GCATGCCTTTGCTTGCAGTTGATGAAACTTGGATGCCATTAATTCTTCTTTTTAAAATAT
JMSF020P11+           GCATGCCTTTGCTTGCAGTTGATGAAACTTGGATGCCATTAATTCTTCTTTTTAAAATAT
JMFF031I19+           GCATGCCTTTGCTTGCAGTTGATGAAACTTGGATGCCATTAATTCTTCTTTTTAAAATAT
                      ____________________________________________________________
consensus             GCATGCCTTTGCTTGCAGTTGATGAAACTTGGATGCCATTAATTCTTCTTTTTAAAATAT
 
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JMFN044H05+           CCGGAGTATTGGTCAGAGAAGACGGCGAGGATTTGCTACTCC                  
rJMSF020P11-          CCGGAGTATTGGTCAGAGAAGACGGCGAGGATTTGCTACTCCCGCCGCTGCGCTGCGTCT
JMSF020P11+           CCGGAGTATTGGTCAGAGAAGACGGCGAGGATTTGCTACTCCCGCCGCTGCGCTGCGTCT
JMFF031I19+           CCGGAGTATTGGTCAGAGAAGACGGCGAGGATTTGCTACTCCCGCCGCTGCGCTGCGTCT
                      ____________________________________________________________
consensus             CCGGAGTATTGGTCAGAGAAGACGGCGAGGATTTGCTACTCCCGCCGCTGCGCTGCGTCT
 
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rJMSF020P11-          ATTGACTCTATTCTAGAAAGAGGCTTTGAA                              
JMSF020P11+           ATTGACTCTATTCTAGAAAGAGGCTTTGAAGGGAGAAAGGAGAGAAATCAAGAGT     
JMFF031I19+           ATTGACTCTATTCTAGAAAGAGGCTTTGAAGGGAGAAAGGAGAGAAATCAAGAGTAACAC
                      ____________________________________________________________
consensus             ATTGACTCTATTCTAGAAAGAGGCTTTGAAGGGAGAAAGGAGAGAAATCAAGAGTAACAC