Contig 008787:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023I18Sequence430008787 (4)ref|XP_011089805.1|2e-45PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Sesamum indicum] ref|XP673008787 (4)ref|XP_004150740.1|1e-85PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cucumis sativus] r
JMSF022D12Sequence711008787 (4)ref|XP_011089805.1|8e-119PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Sesamum indicum] ref|XP652008787 (4)ref|XP_004150740.1|8e-86PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cucumis sativus] r

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022D12- AATCAATCTTCTAAGACAACAACAT
rJMFF023I18- TTAATTATATTAAAATATCTTTAGAATTAAATCAATCTTCTAAGACAACAACAT
                      ____________________________________________________________
consensus TTAATTATATTAAAATATCTTTAGAATTAAATCAATCTTCTAAGACAACAACAT
 
. : . : . : . : . : . :
rJMSF022D12- AACTACAAATTGCATAGTAGCACACAAGACTTCTAGACCAACAAAACAAAACCAAAAAAA
rJMFF023I18- AACTACAAATTGCATAGTAGCACACAAGACTTCTAGACCAACAAAACAAAACCAAAAAAA
                      ____________________________________________________________
consensus AACTACAAATTGCATAGTAGCACACAAGACTTCTAGACCAACAAAACAAAACCAAAAAAA
 
. : . : . : . : . : . :
rJMSF022D12- AAAAGCTTCAGCTTGNGCTCCNGGGGGTTCTTATAAGCAGTCCATTTATCCGGGTACAAG
rJMFF023I18- AAAAGNTTCAGCTTGAGCTCCAGGGGGTTCTTATAAGCAGTCCATTTATCCTGGTACAAN
                      ____________________________________________________________
consensus AAAAGCTTCAGCTTGAGCTCCAGGGGGTTCTTATAAGCAGTCCATTTATCCTGGTACAAG
 
. : . : . : . : . : . :
rJMSF022D12- AAAATCAATACCGCATACCAACTANGGACAAGAATCTGAAATTGNGTTTATCANACAGCN
rJMFF023I18- AAAATCANTACCGCATACCAACTATGGACAANAATCTGAAATTGNGTTTATCAAACAGCT
JMSF022D12+ AAAATCAATACCGCATACCAACTATGGACAAGAATCTGAAATTGTGTTTATCAGACAGCT
                      ____________________________________________________________
consensus AAAATCAATACCGCATACCAACTATGGACAAGAATCTGAAATTGTGTTTATCAGACAGCT
 
. : . : . : . : . : . :
rJMSF022D12- GCTCCGGGATCATTGATAACACCCAAGAAATCATCCTTAATTGTACCAANGCANAAAATT
rJMFF023I18- GCTCCGGGATCNTTGATAACACCCAANAAATCATCCTTAATTGTACCAATGCAAAAAATT
JMSF022D12+ GCTCCGGGATCATTGATAACACCCAAGAAATCATCCTTAATTGTACCAATGCAGAAAATT
                      ____________________________________________________________
consensus GCTCCGGGATCATTGATAACACCCAAGAAATCATCCTTAATTGTACCAATGCAGAAAATT
 
. : . : . : . : . : . :
rJMSF022D12- TCNGTAGCATCAACNCGAGTTCCAANGATCTTTAGTCGTACTTCACTATCCTTCTGAATT
rJMFF023I18- TCTGTANCATCAACACNAGTTCCAATGATCTTTAGTCGNACTTCACTATCCTTCTGAATT
JMSF022D12+ TCTGTAGCATCAACACGAGTTCCAATGATCTTTAGTCGTACTTCACTATCCTTCTGAATT
                      ____________________________________________________________
consensus TCTGTAGCATCAACACGAGTTCCAATGATCTTTAGTCGTACTTCACTATCCTTCTGAATT
 
. : . : . : . : . : . :
rJMSF022D12- TTAACCGATCCATCAAATGTTGNGTAGTTNGGNGCATCTCCNGACNGAAACTCCANGTCA
rJMFF023I18- TTAACCGATCCATCAAATGTTGNGTAGTTTGGNGCATCTCCAAACTGAAACTCCATGTCA
JMSF022D12+ TTAACCGATCCATCAGATGTTGTGTAGTTTGGTGCATCTCCAGACTGAAACTCCATGTCA
                      ____________________________________________________________
consensus TTAACCGATCCATCAAATGTTGTGTAGTTTGGTGCATCTCCAGACTGAAACTCCATGTCA
 
. : . : . : . : . : . :
rJMSF022D12- TCNGGTATTAAANGATTAGAGACAAAAATTTGTACNGGCCCNGCTTCGGCAAAGAAACCC
rJMFF023I18- TCTGGTATTAAATGATTAAANACAAAAATTTGTACAGGCCCTGCTTCGGCAAAAAAACCC
JMSF022D12+ TCTGGTATTAAATGATTAGAGACAAAAATTTGTACAGGCCCTGCTTCGGCAAAGAAACCC
                      ____________________________________________________________
consensus TCTGGTATTAAATGATTAGAGACAAAAATTTGTACAGGCCCTGCTTCGGCAAAGAAACCC
 
. : . : . : . : . : . :
rJMSF022D12- ATCTNGTTCACCATAGTAACAACAGCTTCTAGAATCTCCCCTTTGAANGGCCGAAACACA
rJMFF023I18- ATCTTGTTCACCATAGNAACAACAGCTTCTAAAATCTCCCCTTTGAAAGGCCGAAACACA
JMSF022D12+ ATCTTGTTCACCATAGTAACAACAGCTTCTAGAATCTCCCCTTTGAAAGGCCGAAACACA
JMFF023I18+ CCGAAACACA
                      ____________________________________________________________
consensus ATCTTGTTCACCATAGTAACAACAGCTTCTAGAATCTCCCCTTTGAAAGGCCGAAACACA
 
. : . : . : . : . : . :
rJMSF022D12- ACACACNGATACTTCACNGGGAAAGNGACNAACCCNGTACCGTCGCGAATGAGACCTTTT
rJMFF023I18- ACACACTGATACTTCACTGGGAAAGNGACNAACCCTGTACCGTCGCGAATGAAACCTTTT
JMSF022D12+ ACACACTGATACTTCACTGGGAAAGTGACGAACCCTGTACCGTCGCGAATGAGACCTTTT
JMFF023I18+ ACACACTGATACTTCACTGGGAAAGTGACGAACCCTGTACCGTCGCGAATGAGACCTTTT
                      ____________________________________________________________
consensus ACACACTGATACTTCACTGGGAAAGTGACGAACCCTGTACCGTCGCGAATGAGACCTTTT
 
. : . : . : . : . : . :
rJMSF022D12- CCGACATTCTCAATGCCAGTGATTGCTACTATGAAACCGTGTCGTCCACTGCAAGTTCCC
rJMFF023I18- CCGACATTCTCAATGCCAGTGATTGCTACTATGAAACCGTGTCGTCCACTGCAAGTTCCC
JMSF022D12+ CCGACATTCTCAATGCCAGTGATTGCTACTATGAAACCGTGTCGTCCACTGCAAGTTCCC
JMFF023I18+ CCGACATTCTCAATGCCAGTGATTGCTACTATGAAACCGTGTCGTCCACTGCAAGTTCCC
                      ____________________________________________________________
consensus CCGACATTCTCAATGCCAGTGATTGCTACTATGAAACCGTGTCGTCCACTGCAAGTTCCC
 
. : . : . : . : . : . :
rJMSF022D12- TCGACATCTTTCATGAG
rJMFF023I18- TCGACATCTTTCATGAG
JMSF022D12+ TCGACATCTTTCATGAGCTTGGATACGAGTTTGTCGCGGAGGTCACGGCCAAAGTGGCGA
JMFF023I18+ TCGACATCTTTCATGAGCTTGGATACGAGTTTGTCGCGGAGGTCACGGCCAAAGTGGCGA
                      ____________________________________________________________
consensus TCGACATCTTTCATGAGCTTGGATACGAGTTTGTCGCGGAGGTCACGGCCAAAGTGGCGA
 
. : . : . : . : . : . :
JMSF022D12+ GGGTGGAGTTGCATTTTCCGTTCCAACACTATGTGGAAAAACATCCTTAGATTCTCTCTT
JMFF023I18+ GGGTGGAGTTGCATTTTCCGTTCCAACACTATGTGGAAAAACATCCTTAGATTCTCTCTT
                      ____________________________________________________________
consensus GGGTGGAGTTGCATTTTCCGTTCCAACACTATGTGGAAAAACATCCTTAGATTCTCTCTT
 
. : . : . : . : . : . :
JMSF022D12+ TCTCTTCTGTCTCCTCCTCTTCCTCTCCCTCTTCAGCGGATCAAAATCATCGACTCAAAC
JMFF023I18+ TCTCTTCTGTCTCCTCCTCTTCCTCTCCCTCTTCAGCGGATCAAAATCATCGACTCAAAC
                      ____________________________________________________________
consensus TCTCTTCTGTCTCCTCCTCTTCCTCTCCCTCTTCAGCGGATCAAAATCATCGACTCAAAC
 
. : . : . : . : . : . :
JMSF022D12+ TATGATTGTTTTCTACTGCACTTTGGTTCGCGGGGTTTGTCCACACT
JMFF023I18+ TATGATTGTTTTCTACTGCACTTTGGTTCGCGGGGTTTGTCCACACTAACAAAAGTAACC
                      ____________________________________________________________
consensus TATGATTGTTTTCTACTGCACTTTGGTTCGCGGGGTTTGTCCACACTAACAAAAGTAACC
 
. : . : . : . : . : . :
JMFF023I18+ TATTTTATGCACCATAATAAATACTCCGTCCTAAGCAATTCCTATTCATCTCATCTCTGC
                      ____________________________________________________________
consensus TATTTTATGCACCATAATAAATACTCCGTCCTAAGCAATTCCTATTCATCTCATCTCTGC