Contig 008787:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023I18Sequence430008787 (4)ref|XP_011089805.1|2e-45PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Sesamum indicum] ref|XP673008787 (4)ref|XP_004150740.1|1e-85PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cucumis sativus] r
JMSF022D12Sequence711008787 (4)ref|XP_011089805.1|8e-119PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Sesamum indicum] ref|XP652008787 (4)ref|XP_004150740.1|8e-86PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cucumis sativus] r

Alignment

This contig is upended


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rJMSF022D12-                                             AATCAATCTTCTAAGACAACAACAT
rJMFF023I18-                TTAATTATATTAAAATATCTTTAGAATTAAATCAATCTTCTAAGACAACAACAT
                      ____________________________________________________________
consensus                   TTAATTATATTAAAATATCTTTAGAATTAAATCAATCTTCTAAGACAACAACAT
 
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rJMSF022D12-          AACTACAAATTGCATAGTAGCACACAAGACTTCTAGACCAACAAAACAAAACCAAAAAAA
rJMFF023I18-          AACTACAAATTGCATAGTAGCACACAAGACTTCTAGACCAACAAAACAAAACCAAAAAAA
                      ____________________________________________________________
consensus             AACTACAAATTGCATAGTAGCACACAAGACTTCTAGACCAACAAAACAAAACCAAAAAAA
 
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rJMSF022D12-          AAAAGCTTCAGCTTGNGCTCCNGGGGGTTCTTATAAGCAGTCCATTTATCCGGGTACAAG
rJMFF023I18-          AAAAGNTTCAGCTTGAGCTCCAGGGGGTTCTTATAAGCAGTCCATTTATCCTGGTACAAN
                      ____________________________________________________________
consensus             AAAAGCTTCAGCTTGAGCTCCAGGGGGTTCTTATAAGCAGTCCATTTATCCTGGTACAAG
 
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rJMSF022D12-          AAAATCAATACCGCATACCAACTANGGACAAGAATCTGAAATTGNGTTTATCANACAGCN
rJMFF023I18-          AAAATCANTACCGCATACCAACTATGGACAANAATCTGAAATTGNGTTTATCAAACAGCT
JMSF022D12+           AAAATCAATACCGCATACCAACTATGGACAAGAATCTGAAATTGTGTTTATCAGACAGCT
                      ____________________________________________________________
consensus             AAAATCAATACCGCATACCAACTATGGACAAGAATCTGAAATTGTGTTTATCAGACAGCT
 
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rJMSF022D12-          GCTCCGGGATCATTGATAACACCCAAGAAATCATCCTTAATTGTACCAANGCANAAAATT
rJMFF023I18-          GCTCCGGGATCNTTGATAACACCCAANAAATCATCCTTAATTGTACCAATGCAAAAAATT
JMSF022D12+           GCTCCGGGATCATTGATAACACCCAAGAAATCATCCTTAATTGTACCAATGCAGAAAATT
                      ____________________________________________________________
consensus             GCTCCGGGATCATTGATAACACCCAAGAAATCATCCTTAATTGTACCAATGCAGAAAATT
 
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rJMSF022D12-          TCNGTAGCATCAACNCGAGTTCCAANGATCTTTAGTCGTACTTCACTATCCTTCTGAATT
rJMFF023I18-          TCTGTANCATCAACACNAGTTCCAATGATCTTTAGTCGNACTTCACTATCCTTCTGAATT
JMSF022D12+           TCTGTAGCATCAACACGAGTTCCAATGATCTTTAGTCGTACTTCACTATCCTTCTGAATT
                      ____________________________________________________________
consensus             TCTGTAGCATCAACACGAGTTCCAATGATCTTTAGTCGTACTTCACTATCCTTCTGAATT
 
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rJMSF022D12-          TTAACCGATCCATCAAATGTTGNGTAGTTNGGNGCATCTCCNGACNGAAACTCCANGTCA
rJMFF023I18-          TTAACCGATCCATCAAATGTTGNGTAGTTTGGNGCATCTCCAAACTGAAACTCCATGTCA
JMSF022D12+           TTAACCGATCCATCAGATGTTGTGTAGTTTGGTGCATCTCCAGACTGAAACTCCATGTCA
                      ____________________________________________________________
consensus             TTAACCGATCCATCAAATGTTGTGTAGTTTGGTGCATCTCCAGACTGAAACTCCATGTCA
 
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rJMSF022D12-          TCNGGTATTAAANGATTAGAGACAAAAATTTGTACNGGCCCNGCTTCGGCAAAGAAACCC
rJMFF023I18-          TCTGGTATTAAATGATTAAANACAAAAATTTGTACAGGCCCTGCTTCGGCAAAAAAACCC
JMSF022D12+           TCTGGTATTAAATGATTAGAGACAAAAATTTGTACAGGCCCTGCTTCGGCAAAGAAACCC
                      ____________________________________________________________
consensus             TCTGGTATTAAATGATTAGAGACAAAAATTTGTACAGGCCCTGCTTCGGCAAAGAAACCC
 
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rJMSF022D12-          ATCTNGTTCACCATAGTAACAACAGCTTCTAGAATCTCCCCTTTGAANGGCCGAAACACA
rJMFF023I18-          ATCTTGTTCACCATAGNAACAACAGCTTCTAAAATCTCCCCTTTGAAAGGCCGAAACACA
JMSF022D12+           ATCTTGTTCACCATAGTAACAACAGCTTCTAGAATCTCCCCTTTGAAAGGCCGAAACACA
JMFF023I18+                                                             CCGAAACACA
                      ____________________________________________________________
consensus             ATCTTGTTCACCATAGTAACAACAGCTTCTAGAATCTCCCCTTTGAAAGGCCGAAACACA
 
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rJMSF022D12-          ACACACNGATACTTCACNGGGAAAGNGACNAACCCNGTACCGTCGCGAATGAGACCTTTT
rJMFF023I18-          ACACACTGATACTTCACTGGGAAAGNGACNAACCCTGTACCGTCGCGAATGAAACCTTTT
JMSF022D12+           ACACACTGATACTTCACTGGGAAAGTGACGAACCCTGTACCGTCGCGAATGAGACCTTTT
JMFF023I18+           ACACACTGATACTTCACTGGGAAAGTGACGAACCCTGTACCGTCGCGAATGAGACCTTTT
                      ____________________________________________________________
consensus             ACACACTGATACTTCACTGGGAAAGTGACGAACCCTGTACCGTCGCGAATGAGACCTTTT
 
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rJMSF022D12-          CCGACATTCTCAATGCCAGTGATTGCTACTATGAAACCGTGTCGTCCACTGCAAGTTCCC
rJMFF023I18-          CCGACATTCTCAATGCCAGTGATTGCTACTATGAAACCGTGTCGTCCACTGCAAGTTCCC
JMSF022D12+           CCGACATTCTCAATGCCAGTGATTGCTACTATGAAACCGTGTCGTCCACTGCAAGTTCCC
JMFF023I18+           CCGACATTCTCAATGCCAGTGATTGCTACTATGAAACCGTGTCGTCCACTGCAAGTTCCC
                      ____________________________________________________________
consensus             CCGACATTCTCAATGCCAGTGATTGCTACTATGAAACCGTGTCGTCCACTGCAAGTTCCC
 
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rJMSF022D12-          TCGACATCTTTCATGAG                                           
rJMFF023I18-          TCGACATCTTTCATGAG                                           
JMSF022D12+           TCGACATCTTTCATGAGCTTGGATACGAGTTTGTCGCGGAGGTCACGGCCAAAGTGGCGA
JMFF023I18+           TCGACATCTTTCATGAGCTTGGATACGAGTTTGTCGCGGAGGTCACGGCCAAAGTGGCGA
                      ____________________________________________________________
consensus             TCGACATCTTTCATGAGCTTGGATACGAGTTTGTCGCGGAGGTCACGGCCAAAGTGGCGA
 
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JMSF022D12+           GGGTGGAGTTGCATTTTCCGTTCCAACACTATGTGGAAAAACATCCTTAGATTCTCTCTT
JMFF023I18+           GGGTGGAGTTGCATTTTCCGTTCCAACACTATGTGGAAAAACATCCTTAGATTCTCTCTT
                      ____________________________________________________________
consensus             GGGTGGAGTTGCATTTTCCGTTCCAACACTATGTGGAAAAACATCCTTAGATTCTCTCTT
 
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JMSF022D12+           TCTCTTCTGTCTCCTCCTCTTCCTCTCCCTCTTCAGCGGATCAAAATCATCGACTCAAAC
JMFF023I18+           TCTCTTCTGTCTCCTCCTCTTCCTCTCCCTCTTCAGCGGATCAAAATCATCGACTCAAAC
                      ____________________________________________________________
consensus             TCTCTTCTGTCTCCTCCTCTTCCTCTCCCTCTTCAGCGGATCAAAATCATCGACTCAAAC
 
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JMSF022D12+           TATGATTGTTTTCTACTGCACTTTGGTTCGCGGGGTTTGTCCACACT             
JMFF023I18+           TATGATTGTTTTCTACTGCACTTTGGTTCGCGGGGTTTGTCCACACTAACAAAAGTAACC
                      ____________________________________________________________
consensus             TATGATTGTTTTCTACTGCACTTTGGTTCGCGGGGTTTGTCCACACTAACAAAAGTAACC
 
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JMFF023I18+           TATTTTATGCACCATAATAAATACTCCGTCCTAAGCAATTCCTATTCATCTCATCTCTGC
                      ____________________________________________________________
consensus             TATTTTATGCACCATAATAAATACTCCGTCCTAAGCAATTCCTATTCATCTCATCTCTGC